{"id":"https://openalex.org/W4399487335","doi":"https://doi.org/10.1145/3649476.3658701","title":"Application of Quantum Tensor Networks for Protein Classification","display_name":"Application of Quantum Tensor Networks for Protein Classification","publication_year":2024,"publication_date":"2024-06-10","ids":{"openalex":"https://openalex.org/W4399487335","doi":"https://doi.org/10.1145/3649476.3658701"},"language":"en","primary_location":{"id":"doi:10.1145/3649476.3658701","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3649476.3658701","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Great Lakes Symposium on VLSI 2024","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050944647","display_name":"Debarshi Kundu","orcid":"https://orcid.org/0009-0000-3912-3831"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Debarshi Kundu","raw_affiliation_strings":["Computer Science and Engineering, The Pennsylvania State University, USA"],"raw_orcid":"https://orcid.org/0009-0000-3912-3831","affiliations":[{"raw_affiliation_string":"Computer Science and Engineering, The Pennsylvania State University, USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101969784","display_name":"Archisman Ghosh","orcid":"https://orcid.org/0000-0002-0264-6687"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Archisman Ghosh","raw_affiliation_strings":["Computer Science and Engineering, The Pennsylvania State University, USA"],"raw_orcid":"https://orcid.org/0000-0002-0264-6687","affiliations":[{"raw_affiliation_string":"Computer Science and Engineering, The Pennsylvania State University, USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024414463","display_name":"E. Srinivasan","orcid":null},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Srinivasan Ekambaram","raw_affiliation_strings":["Penn State College of Medicine, The Pennsylvania State University, USA"],"raw_orcid":"https://orcid.org/0000-0003-2323-8364","affiliations":[{"raw_affiliation_string":"Penn State College of Medicine, The Pennsylvania State University, USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024072185","display_name":"Jian Wang","orcid":"https://orcid.org/0000-0001-7768-2802"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jian Wang","raw_affiliation_strings":["Penn State College of Medicine, The Pennsylvania State University, USA"],"raw_orcid":"https://orcid.org/0000-0001-7768-2802","affiliations":[{"raw_affiliation_string":"Penn State College of Medicine, The Pennsylvania State University, USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033490428","display_name":"Nikolay V. Dokholyan","orcid":"https://orcid.org/0000-0002-8225-4025"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nikolay Dokholyan","raw_affiliation_strings":["Penn State College of Medicine, The Pennsylvania State University, USA"],"raw_orcid":"https://orcid.org/0000-0002-8225-4025","affiliations":[{"raw_affiliation_string":"Penn State College of Medicine, The Pennsylvania State University, USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085567454","display_name":"Swaroop Ghosh","orcid":"https://orcid.org/0000-0001-8753-490X"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Swaroop Ghosh","raw_affiliation_strings":["School of EECS, The Pennsylvania State University, USA"],"raw_orcid":"https://orcid.org/0000-0001-8753-490X","affiliations":[{"raw_affiliation_string":"School of EECS, The Pennsylvania State University, USA","institution_ids":["https://openalex.org/I130769515"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.2219,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.82099729,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"132","last_page":"137"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13650","display_name":"Computational Physics and Python Applications","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13650","display_name":"Computational Physics and Python Applications","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9837999939918518,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.980400025844574,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.605315625667572},{"id":"https://openalex.org/keywords/tensor","display_name":"Tensor (intrinsic definition)","score":0.5159138441085815},{"id":"https://openalex.org/keywords/quantum","display_name":"Quantum","score":0.43209967017173767},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.18658867478370667},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.13423192501068115},{"id":"https://openalex.org/keywords/quantum-mechanics","display_name":"Quantum mechanics","score":0.10596010088920593}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.605315625667572},{"id":"https://openalex.org/C155281189","wikidata":"https://www.wikidata.org/wiki/Q3518150","display_name":"Tensor (intrinsic definition)","level":2,"score":0.5159138441085815},{"id":"https://openalex.org/C84114770","wikidata":"https://www.wikidata.org/wiki/Q46344","display_name":"Quantum","level":2,"score":0.43209967017173767},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.18658867478370667},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.13423192501068115},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.10596010088920593},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3649476.3658701","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3649476.3658701","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Great Lakes Symposium on VLSI 2024","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W118906971","https://openalex.org/W1541931954","https://openalex.org/W2124289529","https://openalex.org/W2903221501","https://openalex.org/W2945680873","https://openalex.org/W3096560863","https://openalex.org/W3101427288","https://openalex.org/W3126287822","https://openalex.org/W3144701084","https://openalex.org/W3169377977","https://openalex.org/W3207697613","https://openalex.org/W3217665308","https://openalex.org/W4309506674","https://openalex.org/W4365135628","https://openalex.org/W4365451604"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052","https://openalex.org/W2382290278","https://openalex.org/W4395014643"],"abstract_inverted_index":{"Computational":[0],"methods":[1],"in":[2,16,50,63,79,121,242],"drug":[3,17],"discovery":[4,18],"significantly":[5],"reduce":[6],"both":[7],"time":[8],"and":[9,83,130,150,188],"experimental":[10,174],"costs.":[11],"Nonetheless,":[12],"certain":[13],"computational":[14],"tasks":[15],"can":[19,27,73,84,102,145],"be":[20,28,74,85,103],"daunting":[21],"with":[22,270],"classical":[23,183,219,271],"computing":[24],"techniques":[25],"which":[26,101,211],"potentially":[29],"overcome":[30],"using":[31,87],"quantum":[32,66,96,203,249],"computing.":[33],"A":[34],"crucial":[35],"task":[36,120,198],"within":[37],"this":[38],"domain":[39],"involves":[40],"the":[41,57,88,134,148,165,195,215,223,232],"functional":[42],"classification":[43,197],"of":[44,60,76,98,152,168,217,273],"proteins.":[45],"However,":[46],"a":[47,157,207,218],"challenge":[48],"lies":[49],"adequately":[51],"representing":[52],"lengthy":[53],"protein":[54,71,153,169,225],"sequences":[55,72],"given":[56],"limited":[58],"number":[59],"qubits":[61],"available":[62],"existing":[64,89],"noisy":[65],"computers.":[67],"We":[68,111,155,176,256],"show":[69],"that":[70,123,140,160,221,231,258],"thought":[75],"as":[77],"sentences":[78],"natural":[80],"language":[81,226],"processing":[82,136],"parsed":[86],"Quantum":[90,141],"Natural":[91],"Language":[92],"framework":[93],"into":[94],"parameterized":[95],"circuits":[97],"reasonable":[99],"qubits,":[100],"trained":[104],"to":[105,126,164,193,214,268],"solve":[106,194],"various":[107],"protein-related":[108],"machine-learning":[109],"problems.":[110],"classify":[112],"proteins":[113],"based":[114],"on":[115],"their":[116,266],"sub-cellular":[117],"locations\u2014a":[118],"pivotal":[119],"bioinformatics":[122],"is":[124,212,235],"key":[125],"understanding":[127],"biological":[128],"processes":[129],"disease":[131],"mechanisms.":[132],"Leveraging":[133],"quantum-enhanced":[135],"capabilities,":[137],"we":[138],"demonstrate":[139,177,257],"Tensor":[142],"Networks":[143],"(QTN)":[144],"effectively":[146],"handle":[147],"complexity":[149],"diversity":[151],"sequences.":[154],"present":[156],"detailed":[158],"methodology":[159],"adapts":[161],"QTN":[162],"architectures":[163],"nuanced":[166],"requirements":[167],"data,":[170],"supported":[171],"by":[172,182],"comprehensive":[173],"results.":[175],"two":[178],"distinct":[179],"QTNs,":[180],"inspired":[181],"recurrent":[184],"neural":[185,190],"networks":[186,191],"(RNN)":[187],"convolutional":[189],"(CNN),":[192],"binary":[196],"mentioned":[199],"above.":[200],"Our":[201],"top-performing":[202],"model":[204,220,227,234,250],"has":[205],"achieved":[206],"94%":[208],"accuracy":[209],"rate,":[210],"comparable":[213],"performance":[216],"uses":[222],"ESM2":[224,233],"embeddings.":[228],"It\u2019s":[229],"noteworthy":[230],"extremely":[236],"large,":[237],"containing":[238],"8":[239],"million":[240],"parameters":[241],"its":[243],"smallest":[244],"configuration,":[245],"whereas":[246],"our":[247],"best":[248],"requires":[251],"only":[252],"around":[253],"800":[254],"parameters.":[255],"these":[259],"hybrid":[260],"models":[261,272],"exhibit":[262],"promising":[263],"performance,":[264],"showcasing":[265],"potential":[267],"compete":[269],"similar":[274],"complexity.":[275]},"counts_by_year":[{"year":2025,"cited_by_count":4}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
