{"id":"https://openalex.org/W4393970658","doi":"https://doi.org/10.1145/3648115.3648125","title":"Unlocking performance portability on LUMI-G supercomputer: A virtual screening case study","display_name":"Unlocking performance portability on LUMI-G supercomputer: A virtual screening case study","publication_year":2024,"publication_date":"2024-04-05","ids":{"openalex":"https://openalex.org/W4393970658","doi":"https://doi.org/10.1145/3648115.3648125"},"language":"en","primary_location":{"id":"doi:10.1145/3648115.3648125","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3648115.3648125","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 12th International Workshop on OpenCL and SYCL","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1145/3648115.3648125","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055263185","display_name":"Gianmarco Accordi","orcid":"https://orcid.org/0000-0001-8023-2108"},"institutions":[{"id":"https://openalex.org/I93860229","display_name":"Politecnico di Milano","ror":"https://ror.org/01nffqt88","country_code":"IT","type":"education","lineage":["https://openalex.org/I93860229"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Gianmarco Accordi","raw_affiliation_strings":["Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, Italy"],"affiliations":[{"raw_affiliation_string":"Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, Italy","institution_ids":["https://openalex.org/I93860229"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059293847","display_name":"Davide Gadioli","orcid":"https://orcid.org/0000-0002-0143-0737"},"institutions":[{"id":"https://openalex.org/I93860229","display_name":"Politecnico di Milano","ror":"https://ror.org/01nffqt88","country_code":"IT","type":"education","lineage":["https://openalex.org/I93860229"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Davide Gadioli","raw_affiliation_strings":["Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, Italy"],"affiliations":[{"raw_affiliation_string":"Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, Italy","institution_ids":["https://openalex.org/I93860229"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077005193","display_name":"Gianluca Palermo","orcid":"https://orcid.org/0000-0001-7955-8012"},"institutions":[{"id":"https://openalex.org/I93860229","display_name":"Politecnico di Milano","ror":"https://ror.org/01nffqt88","country_code":"IT","type":"education","lineage":["https://openalex.org/I93860229"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Gianluca Palermo","raw_affiliation_strings":["Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, Italy"],"affiliations":[{"raw_affiliation_string":"Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, Italy","institution_ids":["https://openalex.org/I93860229"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085033505","display_name":"Luigi Crisci","orcid":"https://orcid.org/0000-0002-6095-1321"},"institutions":[{"id":"https://openalex.org/I131729948","display_name":"University of Salerno","ror":"https://ror.org/0192m2k53","country_code":"IT","type":"education","lineage":["https://openalex.org/I131729948"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Luigi Crisci","raw_affiliation_strings":["Dipartimento di Informatica, Universit\u00e0 degli studi di Salerno, Italy"],"affiliations":[{"raw_affiliation_string":"Dipartimento di Informatica, Universit\u00e0 degli studi di Salerno, Italy","institution_ids":["https://openalex.org/I131729948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041701087","display_name":"Lorenzo Carpentieri","orcid":"https://orcid.org/0009-0001-2041-7618"},"institutions":[{"id":"https://openalex.org/I131729948","display_name":"University of Salerno","ror":"https://ror.org/0192m2k53","country_code":"IT","type":"education","lineage":["https://openalex.org/I131729948"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Lorenzo Carpentieri","raw_affiliation_strings":["Dipartimento di Informatica, Universit\u00e0 degli studi di Salerno, Italy"],"affiliations":[{"raw_affiliation_string":"Dipartimento di Informatica, Universit\u00e0 degli studi di Salerno, Italy","institution_ids":["https://openalex.org/I131729948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031619277","display_name":"Biagio Cosenza","orcid":"https://orcid.org/0000-0002-8869-6705"},"institutions":[{"id":"https://openalex.org/I131729948","display_name":"University of Salerno","ror":"https://ror.org/0192m2k53","country_code":"IT","type":"education","lineage":["https://openalex.org/I131729948"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Biagio Cosenza","raw_affiliation_strings":["Dipartimento di Informatica, Universit\u00e0 degli studi di Salerno, Italy"],"affiliations":[{"raw_affiliation_string":"Dipartimento di Informatica, Universit\u00e0 degli studi di Salerno, Italy","institution_ids":["https://openalex.org/I131729948"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032283822","display_name":"Andrea R. Beccari","orcid":"https://orcid.org/0000-0001-6830-2695"},"institutions":[{"id":"https://openalex.org/I4210140932","display_name":"Domp\u00e9 (Italy)","ror":"https://ror.org/04erezm33","country_code":"IT","type":"company","lineage":["https://openalex.org/I4210140932"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Andrea R. Beccari","raw_affiliation_strings":["EXSCALATE, Domp\u00e9 Farmaceutici SpA, Italy"],"affiliations":[{"raw_affiliation_string":"EXSCALATE, Domp\u00e9 Farmaceutici SpA, Italy","institution_ids":["https://openalex.org/I4210140932"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5055263185"],"corresponding_institution_ids":["https://openalex.org/I93860229"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.05512542,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10101","display_name":"Cloud Computing and Resource Management","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10101","display_name":"Cloud Computing and Resource Management","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9890000224113464,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10054","display_name":"Parallel Computing and Optimization Techniques","score":0.9861000180244446,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/software-portability","display_name":"Software portability","score":0.9430639147758484},{"id":"https://openalex.org/keywords/supercomputer","display_name":"Supercomputer","score":0.843618631362915},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7892881035804749},{"id":"https://openalex.org/keywords/cuda","display_name":"CUDA","score":0.723316490650177},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.476176917552948},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.46410760283470154},{"id":"https://openalex.org/keywords/virtual-machine","display_name":"Virtual machine","score":0.45855802297592163},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.44842156767845154},{"id":"https://openalex.org/keywords/general-purpose-computing-on-graphics-processing-units","display_name":"General-purpose computing on graphics processing units","score":0.4447242021560669},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.4228655993938446},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.4224066734313965},{"id":"https://openalex.org/keywords/computer-architecture","display_name":"Computer architecture","score":0.37235409021377563},{"id":"https://openalex.org/keywords/embedded-system","display_name":"Embedded system","score":0.3487001657485962},{"id":"https://openalex.org/keywords/graphics","display_name":"Graphics","score":0.16167137026786804},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.0980955958366394},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.09395831823348999}],"concepts":[{"id":"https://openalex.org/C63000827","wikidata":"https://www.wikidata.org/wiki/Q3080428","display_name":"Software portability","level":2,"score":0.9430639147758484},{"id":"https://openalex.org/C83283714","wikidata":"https://www.wikidata.org/wiki/Q121117","display_name":"Supercomputer","level":2,"score":0.843618631362915},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7892881035804749},{"id":"https://openalex.org/C2778119891","wikidata":"https://www.wikidata.org/wiki/Q477690","display_name":"CUDA","level":2,"score":0.723316490650177},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.476176917552948},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.46410760283470154},{"id":"https://openalex.org/C25344961","wikidata":"https://www.wikidata.org/wiki/Q192726","display_name":"Virtual machine","level":2,"score":0.45855802297592163},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.44842156767845154},{"id":"https://openalex.org/C50630238","wikidata":"https://www.wikidata.org/wiki/Q971505","display_name":"General-purpose computing on graphics processing units","level":3,"score":0.4447242021560669},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.4228655993938446},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.4224066734313965},{"id":"https://openalex.org/C118524514","wikidata":"https://www.wikidata.org/wiki/Q173212","display_name":"Computer architecture","level":1,"score":0.37235409021377563},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.3487001657485962},{"id":"https://openalex.org/C21442007","wikidata":"https://www.wikidata.org/wiki/Q1027879","display_name":"Graphics","level":2,"score":0.16167137026786804},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.0980955958366394},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.09395831823348999},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/3648115.3648125","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3648115.3648125","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 12th International Workshop on OpenCL and SYCL","raw_type":"proceedings-article"},{"id":"pmh:oai:re.public.polimi.it:11311/1272929","is_oa":true,"landing_page_url":"https://hdl.handle.net/11311/1272929","pdf_url":"https://re.public.polimi.it/bitstream/11311/1272929/2/IWOCL24___LUMI_G_benchmark%20%281%29.pdf","source":{"id":"https://openalex.org/S4306400312","display_name":"Virtual Community of Pathological Anatomy (University of Castilla La Mancha)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79189158","host_organization_name":"University of Castilla-La Mancha","host_organization_lineage":["https://openalex.org/I79189158"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":{"id":"doi:10.1145/3648115.3648125","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3648115.3648125","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 12th International Workshop on OpenCL and SYCL","raw_type":"proceedings-article"},"sustainable_development_goals":[{"score":0.4399999976158142,"display_name":"Affordable and clean energy","id":"https://metadata.un.org/sdg/7"}],"awards":[{"id":"https://openalex.org/G1426318481","display_name":null,"funder_award_id":"grant","funder_id":"https://openalex.org/F4320322725","funder_display_name":"China Scholarship Council"},{"id":"https://openalex.org/G4132985236","display_name":null,"funder_award_id":"unknown","funder_id":"https://openalex.org/F4320322725","funder_display_name":"China Scholarship Council"},{"id":"https://openalex.org/G4155013421","display_name":null,"funder_award_id":"956137","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4956428346","display_name":null,"funder_award_id":"Horizon 2020 research and innovatio","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8318064016","display_name":null,"funder_award_id":"Horizon","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320322725","display_name":"China Scholarship Council","ror":"https://ror.org/04atp4p48"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W1516402388","https://openalex.org/W2743401659","https://openalex.org/W3091934100","https://openalex.org/W3184015517","https://openalex.org/W3195571629","https://openalex.org/W3214514279","https://openalex.org/W3215053647","https://openalex.org/W4200140025","https://openalex.org/W4200338937","https://openalex.org/W4200589401","https://openalex.org/W4225270742","https://openalex.org/W4286655745","https://openalex.org/W4362675180","https://openalex.org/W4376456252","https://openalex.org/W4381894488","https://openalex.org/W4388581065","https://openalex.org/W4388581265","https://openalex.org/W4391484352"],"related_works":["https://openalex.org/W3020739840","https://openalex.org/W2913998709","https://openalex.org/W4386875822","https://openalex.org/W3177128669","https://openalex.org/W1963859303","https://openalex.org/W2364044215","https://openalex.org/W2389600408","https://openalex.org/W240129890","https://openalex.org/W3048701459","https://openalex.org/W2149078538"],"abstract_inverted_index":{"High-Performance":[0],"Computing":[1],"is":[2,37],"the":[3,19,30,46,76,84,94,97],"target":[4],"system":[5,87],"for":[6],"virtual":[7,40,59,111],"screening":[8,41,60,112],"applications,":[9],"which":[10,14],"aim":[11],"to":[12,16,56,108],"suggest":[13],"candidates":[15],"test":[17],"in":[18],"drug":[20],"discovery":[21],"process.":[22],"The":[23],"HPC":[24,63,86,116],"heterogeneity":[25],"of":[26,78],"modern":[27],"systems":[28,64],"raises":[29],"functional":[31],"and":[32],"performance":[33],"portability":[34],"challenge.":[35],"LiGen":[36,98,107],"a":[38,70,110],"well-known":[39],"application":[42],"that":[43,88],"can":[44],"offload":[45],"most":[47],"demanding":[48],"computation":[49],"on":[50,62,83,93,103,114],"GPUs.":[51,91],"It":[52],"has":[53],"been":[54],"used":[55],"perform":[57],"extreme-scale":[58],"campaigns":[61],"equipped":[65],"with":[66],"NVIDIA":[67],"cards":[68],"using":[69],"CUDA":[71],"implementation.":[72],"This":[73],"paper":[74],"reports":[75],"experience":[77],"running":[79],"its":[80],"SYCL":[81,99],"implementation":[82,100],"LUMI-G":[85,115],"leverages":[89],"AMD":[90,104],"Based":[92],"experimental":[95],"results,":[96],"performs":[101],"well":[102],"GPUs,":[105],"enabling":[106],"run":[109],"campaign":[113],"infrastructure.":[117]},"counts_by_year":[],"updated_date":"2026-03-12T08:34:05.389933","created_date":"2025-10-10T00:00:00"}
