{"id":"https://openalex.org/W4403429702","doi":"https://doi.org/10.1145/3638530.3654423","title":"EMxDesign: A Genetic Algorithm for High Affinity Drug Design","display_name":"EMxDesign: A Genetic Algorithm for High Affinity Drug Design","publication_year":2024,"publication_date":"2024-07-14","ids":{"openalex":"https://openalex.org/W4403429702","doi":"https://doi.org/10.1145/3638530.3654423"},"language":"en","primary_location":{"id":"doi:10.1145/3638530.3654423","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3638530.3654423","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3638530.3654423?download=true","source":{"id":"https://openalex.org/S4363608771","display_name":"Proceedings of the Genetic and Evolutionary Computation Conference Companion","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Genetic and Evolutionary Computation Conference Companion","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://dl.acm.org/doi/pdf/10.1145/3638530.3654423?download=true","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086474967","display_name":"Neha Jain","orcid":"https://orcid.org/0009-0000-8864-7754"},"institutions":[{"id":"https://openalex.org/I130701444","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44","country_code":"US","type":"education","lineage":["https://openalex.org/I130701444"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Neha Jain","raw_affiliation_strings":["Georgia Institute of Technology, Atlanta, United States of America"],"raw_orcid":"https://orcid.org/0009-0000-8864-7754","affiliations":[{"raw_affiliation_string":"Georgia Institute of Technology, Atlanta, United States of America","institution_ids":["https://openalex.org/I130701444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036325974","display_name":"Andrew Hornback","orcid":"https://orcid.org/0009-0009-5461-5848"},"institutions":[{"id":"https://openalex.org/I130701444","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44","country_code":"US","type":"education","lineage":["https://openalex.org/I130701444"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew Hornback","raw_affiliation_strings":["Georgia Institute of Technology, Atlanta, United States of America"],"raw_orcid":"https://orcid.org/0009-0009-5461-5848","affiliations":[{"raw_affiliation_string":"Georgia Institute of Technology, Atlanta, United States of America","institution_ids":["https://openalex.org/I130701444"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030096887","display_name":"May D. Wang","orcid":"https://orcid.org/0000-0003-3961-3608"},"institutions":[{"id":"https://openalex.org/I130701444","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44","country_code":"US","type":"education","lineage":["https://openalex.org/I130701444"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"May Dongmei Wang","raw_affiliation_strings":["Georgia Institute of Technology, Atlanta, United States of America"],"raw_orcid":"https://orcid.org/0000-0003-3961-3608","affiliations":[{"raw_affiliation_string":"Georgia Institute of Technology, Atlanta, United States of America","institution_ids":["https://openalex.org/I130701444"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.23913043,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"439","last_page":"442"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12817","display_name":"Pharmacological Effects of Natural Compounds","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/3004","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6015995144844055},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.5261504054069519},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4880043566226959},{"id":"https://openalex.org/keywords/algorithm-design","display_name":"Algorithm design","score":0.46763160824775696},{"id":"https://openalex.org/keywords/genetic-algorithm","display_name":"Genetic algorithm","score":0.4584678113460541},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.17870602011680603},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11666509509086609},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.11301553249359131}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6015995144844055},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.5261504054069519},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4880043566226959},{"id":"https://openalex.org/C106516650","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm design","level":2,"score":0.46763160824775696},{"id":"https://openalex.org/C8880873","wikidata":"https://www.wikidata.org/wiki/Q187787","display_name":"Genetic algorithm","level":2,"score":0.4584678113460541},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.17870602011680603},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11666509509086609},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.11301553249359131}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3638530.3654423","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3638530.3654423","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3638530.3654423?download=true","source":{"id":"https://openalex.org/S4363608771","display_name":"Proceedings of the Genetic and Evolutionary Computation Conference Companion","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Genetic and Evolutionary Computation Conference Companion","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.1145/3638530.3654423","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3638530.3654423","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3638530.3654423?download=true","source":{"id":"https://openalex.org/S4363608771","display_name":"Proceedings of the Genetic and Evolutionary Computation Conference Companion","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Genetic and Evolutionary Computation Conference Companion","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4403429702.pdf"},"referenced_works_count":7,"referenced_works":["https://openalex.org/W2134967712","https://openalex.org/W2930226704","https://openalex.org/W3024423177","https://openalex.org/W3159177617","https://openalex.org/W3168436232","https://openalex.org/W4322741046","https://openalex.org/W4323545077"],"related_works":["https://openalex.org/W2393888177","https://openalex.org/W2544423928","https://openalex.org/W2115794623","https://openalex.org/W2360264381","https://openalex.org/W2067173559","https://openalex.org/W2148738811","https://openalex.org/W1613730747","https://openalex.org/W2541389358","https://openalex.org/W4318948887","https://openalex.org/W1994204274"],"abstract_inverted_index":{"As":[0],"pathogens":[1,40],"are":[2,146],"rapidly":[3],"evolving":[4],"to":[5,12,23,38,66,114,151,155],"evade":[6],"modern":[7],"drugs,":[8],"it":[9],"is":[10,26],"vital":[11],"design":[13,100],"efficient,":[14],"optimal":[15],"treatments":[16],"in":[17,75,157],"a":[18,61],"timely":[19],"manner.":[20],"One":[21],"way":[22],"achieve":[24],"this":[25,51,83,149],"by":[27,70],"mimicking":[28],"the":[29,44],"process":[30],"of":[31,41,46,77,94,141],"evolution":[32],"when":[33],"designing":[34],"drugs":[35],"most":[36],"fit":[37],"combat":[39],"interest":[42],"through":[43],"use":[45],"genetic":[47,62,96],"evolutionary":[48],"algorithms.":[49],"In":[50],"work,":[52],"we":[53],"introduce":[54],"EMxDesign":[55,85,113],"(Element":[56],"Molecule":[57],"Exchange":[58],"Drug":[59],"Design),":[60],"algorithm":[63],"that":[64],"aims":[65],"optimize":[67],"drug-pathogen":[68],"affinity":[69,88,138],"inducing":[71],"single":[72],"element":[73],"mutations":[74],"cross-overs":[76],"existing":[78,95],"molecular":[79],"drug":[80,89,99,116,158],"structures.":[81],"Using":[82],"approach,":[84],"generates":[86],"high":[87],"molecules":[90,117,133],"while":[91],"circumventing":[92],"problems":[93],"algorithms":[97],"for":[98,107,118,139],"such":[101],"as":[102],"requiring":[103],"specific":[104],"hyperparameter":[105],"tuning":[106],"different":[108],"protein":[109,121],"targets.":[110],"We":[111,145],"used":[112],"generate":[115],"eighteen":[119],"SARS-CoV-2":[120],"pocket":[122],"targets,":[123],"and":[124],"found":[125],"after":[126],"just":[127],"one":[128],"iteration":[129],"our":[130,142],"newly":[131],"generated":[132],"had":[134],"significantly":[135],"higher":[136],"mean":[137],"thirteen":[140],"target":[143],"pockets.":[144],"currently":[147],"refining":[148],"framework":[150],"launch":[152],"an":[153],"application":[154],"aid":[156],"development":[159],"at":[160],"scale.":[161]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
