{"id":"https://openalex.org/W4392255492","doi":"https://doi.org/10.1145/3637732.3637782","title":"Virtual screening and molecular dynamics simulation of inhibitors from medicine food homology plants based on hand, foot and mouth disease related target EV71 3C protease","display_name":"Virtual screening and molecular dynamics simulation of inhibitors from medicine food homology plants based on hand, foot and mouth disease related target EV71 3C protease","publication_year":2023,"publication_date":"2023-11-09","ids":{"openalex":"https://openalex.org/W4392255492","doi":"https://doi.org/10.1145/3637732.3637782"},"language":"en","primary_location":{"id":"doi:10.1145/3637732.3637782","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3637732.3637782","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2023 10th International Conference on Biomedical and Bioinformatics Engineering","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Siquan Xie","orcid":"https://orcid.org/0009-0000-7735-8738"},"institutions":[{"id":"https://openalex.org/I125839683","display_name":"Beijing Institute of Technology","ror":"https://ror.org/01skt4w74","country_code":"CN","type":"education","lineage":["https://openalex.org/I125839683","https://openalex.org/I890469752"]},{"id":"https://openalex.org/I4210165204","display_name":"Zhuhai Institute of Advanced Technology","ror":"https://ror.org/05r1mzq61","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210145761","https://openalex.org/I4210165204"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Siquan Xie","raw_affiliation_strings":["Beijing Institute of Technology, zhuhai, China"],"raw_orcid":"https://orcid.org/0009-0000-7735-8738","affiliations":[{"raw_affiliation_string":"Beijing Institute of Technology, zhuhai, China","institution_ids":["https://openalex.org/I4210165204","https://openalex.org/I125839683"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039229747","display_name":"Xinyue Chen","orcid":"https://orcid.org/0009-0001-5386-2128"},"institutions":[{"id":"https://openalex.org/I125839683","display_name":"Beijing Institute of Technology","ror":"https://ror.org/01skt4w74","country_code":"CN","type":"education","lineage":["https://openalex.org/I125839683","https://openalex.org/I890469752"]},{"id":"https://openalex.org/I4210165204","display_name":"Zhuhai Institute of Advanced Technology","ror":"https://ror.org/05r1mzq61","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210145761","https://openalex.org/I4210165204"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xinyue Chen","raw_affiliation_strings":["Beijing Institute of Technology, zhuhai, China"],"raw_orcid":"https://orcid.org/0009-0001-5386-2128","affiliations":[{"raw_affiliation_string":"Beijing Institute of Technology, zhuhai, China","institution_ids":["https://openalex.org/I4210165204","https://openalex.org/I125839683"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103023022","display_name":"Yilin Tang","orcid":null},"institutions":[{"id":"https://openalex.org/I125839683","display_name":"Beijing Institute of Technology","ror":"https://ror.org/01skt4w74","country_code":"CN","type":"education","lineage":["https://openalex.org/I125839683","https://openalex.org/I890469752"]},{"id":"https://openalex.org/I4210165204","display_name":"Zhuhai Institute of Advanced Technology","ror":"https://ror.org/05r1mzq61","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210145761","https://openalex.org/I4210165204"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yilin Tang","raw_affiliation_strings":["Beijing Institute of Technology, zhuhai, China"],"raw_orcid":"https://orcid.org/0009-0003-2307-1848","affiliations":[{"raw_affiliation_string":"Beijing Institute of Technology, zhuhai, China","institution_ids":["https://openalex.org/I4210165204","https://openalex.org/I125839683"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101511584","display_name":"Shutian Chen","orcid":"https://orcid.org/0009-0000-6114-3425"},"institutions":[{"id":"https://openalex.org/I125839683","display_name":"Beijing Institute of Technology","ror":"https://ror.org/01skt4w74","country_code":"CN","type":"education","lineage":["https://openalex.org/I125839683","https://openalex.org/I890469752"]},{"id":"https://openalex.org/I4210165204","display_name":"Zhuhai Institute of Advanced Technology","ror":"https://ror.org/05r1mzq61","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210145761","https://openalex.org/I4210165204"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shutian Chen","raw_affiliation_strings":["Beijing Institute of Technology, zhuhai, China"],"raw_orcid":"https://orcid.org/0009-0000-6114-3425","affiliations":[{"raw_affiliation_string":"Beijing Institute of Technology, zhuhai, China","institution_ids":["https://openalex.org/I4210165204","https://openalex.org/I125839683"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065874847","display_name":"Weili Chen","orcid":"https://orcid.org/0000-0003-2510-9355"},"institutions":[{"id":"https://openalex.org/I125839683","display_name":"Beijing Institute of Technology","ror":"https://ror.org/01skt4w74","country_code":"CN","type":"education","lineage":["https://openalex.org/I125839683","https://openalex.org/I890469752"]},{"id":"https://openalex.org/I4210165204","display_name":"Zhuhai Institute of Advanced Technology","ror":"https://ror.org/05r1mzq61","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210145761","https://openalex.org/I4210165204"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Weili Chen","raw_affiliation_strings":["Beijing Institute of Technology, zhuhai, China"],"raw_orcid":"https://orcid.org/0000-0003-2510-9355","affiliations":[{"raw_affiliation_string":"Beijing Institute of Technology, zhuhai, China","institution_ids":["https://openalex.org/I4210165204","https://openalex.org/I125839683"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076386649","display_name":"Lu\u2010Jing Gan","orcid":"https://orcid.org/0000-0002-2352-4187"},"institutions":[{"id":"https://openalex.org/I125839683","display_name":"Beijing Institute of Technology","ror":"https://ror.org/01skt4w74","country_code":"CN","type":"education","lineage":["https://openalex.org/I125839683","https://openalex.org/I890469752"]},{"id":"https://openalex.org/I4210165204","display_name":"Zhuhai Institute of Advanced Technology","ror":"https://ror.org/05r1mzq61","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210145761","https://openalex.org/I4210165204"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lujing Gan","raw_affiliation_strings":["Beijing Institute of Technology, zhuhai, China"],"raw_orcid":"https://orcid.org/0000-0002-2352-4187","affiliations":[{"raw_affiliation_string":"Beijing Institute of Technology, zhuhai, China","institution_ids":["https://openalex.org/I4210165204","https://openalex.org/I125839683"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I125839683","https://openalex.org/I4210165204"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.39606323,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"94","last_page":"98"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11112","display_name":"Viral Infections and Immunology Research","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/2705","display_name":"Cardiology and Cardiovascular Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11112","display_name":"Viral Infections and Immunology Research","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/2705","display_name":"Cardiology and Cardiovascular Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10200","display_name":"Rheumatoid Arthritis Research and Therapies","score":0.9840999841690063,"subfield":{"id":"https://openalex.org/subfields/2745","display_name":"Rheumatology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12477","display_name":"Toxin Mechanisms and Immunotoxins","score":0.9761999845504761,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protease","display_name":"Protease","score":0.684820294380188},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.6618178486824036},{"id":"https://openalex.org/keywords/homology-modeling","display_name":"Homology modeling","score":0.6482565402984619},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4737682640552521},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.46637752652168274},{"id":"https://openalex.org/keywords/autodock","display_name":"AutoDock","score":0.4465672969818115},{"id":"https://openalex.org/keywords/cysteine-protease","display_name":"Cysteine protease","score":0.4376000463962555},{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.4292410612106323},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.38586676120758057},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3608373999595642},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.26212647557258606},{"id":"https://openalex.org/keywords/pharmacophore","display_name":"Pharmacophore","score":0.13754954934120178},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.1170397698879242},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09088766574859619}],"concepts":[{"id":"https://openalex.org/C2776714187","wikidata":"https://www.wikidata.org/wiki/Q212410","display_name":"Protease","level":3,"score":0.684820294380188},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.6618178486824036},{"id":"https://openalex.org/C169627665","wikidata":"https://www.wikidata.org/wiki/Q5767913","display_name":"Homology modeling","level":3,"score":0.6482565402984619},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4737682640552521},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.46637752652168274},{"id":"https://openalex.org/C2780152424","wikidata":"https://www.wikidata.org/wiki/Q4826062","display_name":"AutoDock","level":4,"score":0.4465672969818115},{"id":"https://openalex.org/C2777283782","wikidata":"https://www.wikidata.org/wiki/Q419343","display_name":"Cysteine protease","level":4,"score":0.4376000463962555},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.4292410612106323},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.38586676120758057},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3608373999595642},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.26212647557258606},{"id":"https://openalex.org/C56173144","wikidata":"https://www.wikidata.org/wiki/Q1539893","display_name":"Pharmacophore","level":2,"score":0.13754954934120178},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.1170397698879242},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09088766574859619},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3637732.3637782","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3637732.3637782","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2023 10th International Conference on Biomedical and Bioinformatics Engineering","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W20392614","https://openalex.org/W1592950931","https://openalex.org/W1982878265","https://openalex.org/W1987234864","https://openalex.org/W2001305951","https://openalex.org/W2015688756","https://openalex.org/W2029667189","https://openalex.org/W2039117234","https://openalex.org/W2060011480","https://openalex.org/W2077424659","https://openalex.org/W2108712394","https://openalex.org/W2111302701","https://openalex.org/W2124679671","https://openalex.org/W2153693471","https://openalex.org/W2157281740","https://openalex.org/W2237489673","https://openalex.org/W2490904315","https://openalex.org/W2523523269","https://openalex.org/W2536470745","https://openalex.org/W2887087461","https://openalex.org/W3182055317","https://openalex.org/W3188418295","https://openalex.org/W3213210314","https://openalex.org/W4226391696"],"related_works":["https://openalex.org/W2089188080","https://openalex.org/W2336040088","https://openalex.org/W2109587698","https://openalex.org/W4245963358","https://openalex.org/W3200294295","https://openalex.org/W4210495387","https://openalex.org/W3020829968","https://openalex.org/W2057055220","https://openalex.org/W4211227887","https://openalex.org/W2145925696"],"abstract_inverted_index":{"Virtual":[0],"screening":[1],"and":[2,25,40,47,66,85,93,114],"molecular":[3],"dynamics":[4],"simulation":[5,68],"were":[6,57],"used":[7,70],"to":[8],"explore":[9],"the":[10,41,61],"potential":[11,108],"active":[12,31,45],"components":[13,32,46],"of":[14,30,33,63],"medicine":[15,34],"food":[16,35],"homology":[17,36],"plants":[18,37],"for":[19,71],"inhibiting":[20],"enterovirus":[21],"A71":[22],"3C":[23,101],"protease":[24,48],"inhibition":[26,97],"mechanism.":[27],"The":[28,54,74],"dataset":[29],"was":[38,49,69,79,89],"established,":[39],"binding":[42,75],"mode":[43,76],"between":[44,77],"simulated":[50],"by":[51,59,81],"Autodock":[52],"Vina.":[53],"candidate":[55],"ligands":[56],"screened":[58],"sorting":[60],"affinity":[62],"scoring":[64],"function,":[65],"MD":[67],"further":[72],"verify.":[73],"molecules":[78],"predicted":[80],"hydrogen":[82],"bond":[83],"analysis":[84],"intermolecular":[86],"interaction.":[87],"It":[88],"found":[90],"that":[91],"flavonoids":[92],"derivatives":[94],"have":[95],"better":[96],"effect":[98],"on":[99],"EV71":[100],"prorotease.":[102],"Eriodictyol-7-O-glucoside":[103],"in":[104],"Flos":[105],"Lonicerae":[106],"has":[107],"inhibitory":[109],"activity":[110],"against":[111],"hand,":[112],"foot":[113],"mouth":[115],"disease.":[116]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
