{"id":"https://openalex.org/W4401863469","doi":"https://doi.org/10.1145/3637528.3671652","title":"Personalised Drug Identifier for Cancer Treatment with Transformers using Auxiliary Information","display_name":"Personalised Drug Identifier for Cancer Treatment with Transformers using Auxiliary Information","publication_year":2024,"publication_date":"2024-08-24","ids":{"openalex":"https://openalex.org/W4401863469","doi":"https://doi.org/10.1145/3637528.3671652"},"language":"en","primary_location":{"id":"doi:10.1145/3637528.3671652","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3637528.3671652","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3637528.3671652","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 30th ACM SIGKDD Conference on Knowledge Discovery and Data Mining","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://dl.acm.org/doi/pdf/10.1145/3637528.3671652","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064435770","display_name":"Aishwarya Jayagopal","orcid":"https://orcid.org/0000-0002-5658-0724"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":true,"raw_author_name":"Aishwarya Jayagopal","raw_affiliation_strings":["National University of Singapore, Singapore, Singapore"],"affiliations":[{"raw_affiliation_string":"National University of Singapore, Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102768105","display_name":"Hansheng Xue","orcid":"https://orcid.org/0000-0002-5263-4844"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Hansheng Xue","raw_affiliation_strings":["National University of Singapore, Singapore, Singapore"],"affiliations":[{"raw_affiliation_string":"National University of Singapore, Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5106713440","display_name":"Ziyang He","orcid":null},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Ziyang He","raw_affiliation_strings":["National University of Singapore, Singapore, Singapore"],"affiliations":[{"raw_affiliation_string":"National University of Singapore, Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035196839","display_name":"Robert Walsh","orcid":"https://orcid.org/0000-0003-0985-606X"},"institutions":[{"id":"https://openalex.org/I4210103786","display_name":"National University Cancer Institute, Singapore","ror":"https://ror.org/025yypj46","country_code":"SG","type":"education","lineage":["https://openalex.org/I4210103786","https://openalex.org/I4210150261"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Robert J. Walsh","raw_affiliation_strings":["National University Cancer Institute, Singapore, Singapore"],"affiliations":[{"raw_affiliation_string":"National University Cancer Institute, Singapore, Singapore","institution_ids":["https://openalex.org/I4210103786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5093286012","display_name":"Krishna Kumar Hariprasannan","orcid":null},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Krishna Kumar Hariprasannan","raw_affiliation_strings":["National University of Singapore, Singapore, Singapore"],"affiliations":[{"raw_affiliation_string":"National University of Singapore, Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059673967","display_name":"David S.P. Tan","orcid":"https://orcid.org/0000-0001-9087-5262"},"institutions":[{"id":"https://openalex.org/I4210103786","display_name":"National University Cancer Institute, Singapore","ror":"https://ror.org/025yypj46","country_code":"SG","type":"education","lineage":["https://openalex.org/I4210103786","https://openalex.org/I4210150261"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"David Shao Peng Tan","raw_affiliation_strings":["Cancer Science Institute of Singapore, Singapore, Singapore"],"affiliations":[{"raw_affiliation_string":"Cancer Science Institute of Singapore, Singapore, Singapore","institution_ids":["https://openalex.org/I4210103786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012262880","display_name":"Tuan Zea Tan","orcid":"https://orcid.org/0000-0001-6624-1593"},"institutions":[{"id":"https://openalex.org/I4210103786","display_name":"National University Cancer Institute, Singapore","ror":"https://ror.org/025yypj46","country_code":"SG","type":"education","lineage":["https://openalex.org/I4210103786","https://openalex.org/I4210150261"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Tuan Zea Tan","raw_affiliation_strings":["Cancer Science Institute of Singapore, Singapore, Singapore"],"affiliations":[{"raw_affiliation_string":"Cancer Science Institute of Singapore, Singapore, Singapore","institution_ids":["https://openalex.org/I4210103786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082672112","display_name":"Jason J. Pitt","orcid":"https://orcid.org/0000-0002-7534-4516"},"institutions":[{"id":"https://openalex.org/I4210103786","display_name":"National University Cancer Institute, Singapore","ror":"https://ror.org/025yypj46","country_code":"SG","type":"education","lineage":["https://openalex.org/I4210103786","https://openalex.org/I4210150261"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Jason J. Pitt","raw_affiliation_strings":["Cancer Science Institute of Singapore, Singapore, Singapore"],"affiliations":[{"raw_affiliation_string":"Cancer Science Institute of Singapore, Singapore, Singapore","institution_ids":["https://openalex.org/I4210103786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008789298","display_name":"Anand D. Jeyasekharan","orcid":"https://orcid.org/0000-0001-9816-6137"},"institutions":[{"id":"https://openalex.org/I4210103786","display_name":"National University Cancer Institute, Singapore","ror":"https://ror.org/025yypj46","country_code":"SG","type":"education","lineage":["https://openalex.org/I4210103786","https://openalex.org/I4210150261"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Anand D. Jeyasekharan","raw_affiliation_strings":["Cancer Science Institute of Singapore, Singapore, Singapore"],"affiliations":[{"raw_affiliation_string":"Cancer Science Institute of Singapore, Singapore, Singapore","institution_ids":["https://openalex.org/I4210103786"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079452621","display_name":"Vaibhav Rajan","orcid":"https://orcid.org/0000-0002-6748-6864"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Vaibhav Rajan","raw_affiliation_strings":["National University of Singapore, Singapore, Singapore"],"affiliations":[{"raw_affiliation_string":"National University of Singapore, Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5064435770"],"corresponding_institution_ids":["https://openalex.org/I165932596"],"apc_list":null,"apc_paid":null,"fwci":0.4679,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.64464503,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"5138","last_page":"5149"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.6437928676605225},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5766907334327698},{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.4637283682823181},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.4631710648536682},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2322494387626648},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.18319812417030334},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.13532933592796326},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.12883523106575012},{"id":"https://openalex.org/keywords/electrical-engineering","display_name":"Electrical engineering","score":0.09970355033874512}],"concepts":[{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.6437928676605225},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5766907334327698},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.4637283682823181},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.4631710648536682},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2322494387626648},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.18319812417030334},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.13532933592796326},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.12883523106575012},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.09970355033874512},{"id":"https://openalex.org/C165801399","wikidata":"https://www.wikidata.org/wiki/Q25428","display_name":"Voltage","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3637528.3671652","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3637528.3671652","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3637528.3671652","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 30th ACM SIGKDD Conference on Knowledge Discovery and Data Mining","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.1145/3637528.3671652","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3637528.3671652","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3637528.3671652","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 30th ACM SIGKDD Conference on Knowledge Discovery and Data Mining","raw_type":"proceedings-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.6100000143051147}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4401863469.pdf"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W2044834685","https://openalex.org/W2049497373","https://openalex.org/W2108068107","https://openalex.org/W2139248078","https://openalex.org/W2161593277","https://openalex.org/W2167422856","https://openalex.org/W2336714811","https://openalex.org/W2506122519","https://openalex.org/W2613362156","https://openalex.org/W2770026599","https://openalex.org/W2789172526","https://openalex.org/W2798890825","https://openalex.org/W2955754489","https://openalex.org/W2963232127","https://openalex.org/W2969881216","https://openalex.org/W3033196316","https://openalex.org/W3042645205","https://openalex.org/W3124481204","https://openalex.org/W3127238141","https://openalex.org/W3147894994","https://openalex.org/W3162529261","https://openalex.org/W3174808240","https://openalex.org/W3212461952","https://openalex.org/W4210992155","https://openalex.org/W4213446973","https://openalex.org/W4220859775","https://openalex.org/W4287124471","https://openalex.org/W4293241248","https://openalex.org/W4294559022","https://openalex.org/W4306412305","https://openalex.org/W4310060313","https://openalex.org/W4311127561","https://openalex.org/W4384024040","https://openalex.org/W4387667876","https://openalex.org/W4391238866","https://openalex.org/W4391360382","https://openalex.org/W4405648826"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W4378651134","https://openalex.org/W4252684102","https://openalex.org/W2352307597","https://openalex.org/W1979633005","https://openalex.org/W2163724607","https://openalex.org/W3135403405","https://openalex.org/W2608983118","https://openalex.org/W1980092392"],"abstract_inverted_index":{"Cancer":[0],"remains":[1],"a":[2,114],"global":[3],"challenge":[4],"due":[5,57],"to":[6,55,58,65],"its":[7],"growing":[8],"clinical":[9,37],"and":[10],"economic":[11],"burden.":[12],"Its":[13],"uniquely":[14],"personal":[15],"manifestation,":[16],"which":[17,52,118],"makes":[18],"treatment":[19,27],"difficult,":[20],"has":[21],"fuelled":[22],"the":[23,82,88,120],"quest":[24],"for":[25,106,130],"personalized":[26],"strategies.":[28],"Thus,":[29],"genomic":[30],"profiling":[31],"is":[32,133],"increasingly":[33],"becoming":[34],"part":[35],"of":[36,42,73,87,90,122],"diagnostic":[38,94],"panels.":[39,95],"Effective":[40],"use":[41],"such":[43,93],"panels":[44],"requires":[45],"accurate":[46],"drug":[47],"response":[48],"prediction":[49],"(DRP)":[50],"models,":[51],"are":[53],"challenging":[54],"build":[56],"limited":[59],"labelled":[60],"patient":[61,104],"data.":[62,128],"Previous":[63],"methods":[64],"address":[66,110],"this":[67],"problem":[68],"have":[69],"used":[70],"various":[71],"forms":[72],"transfer":[74],"learning.":[75],"However,":[76],"they":[77,97],"do":[78,98],"not":[79,99],"explicitly":[80],"model":[81,107],"variable":[83],"length":[84],"sequential":[85],"structure":[86],"list":[89],"mutations":[91],"in":[92],"Further,":[96],"utilize":[100],"auxiliary":[101],"information":[102],"(like":[103],"survival)":[105],"training.":[108],"We":[109],"these":[111],"limitations":[112],"through":[113],"novel":[115],"transformer-based":[116],"method,":[117],"surpasses":[119],"performance":[121],"state-of-the-art":[123],"DRP":[124],"models":[125],"on":[126],"benchmark":[127],"Code":[129],"our":[131],"method":[132],"available":[134],"at":[135],"https://github.com/CDAL-SOC/PREDICT-AI.":[136]},"counts_by_year":[{"year":2025,"cited_by_count":2}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
