{"id":"https://openalex.org/W2954747304","doi":"https://doi.org/10.1145/3626233","title":"Survey of Information Encoding Techniques for DNA","display_name":"Survey of Information Encoding Techniques for DNA","publication_year":2023,"publication_date":"2023-10-04","ids":{"openalex":"https://openalex.org/W2954747304","doi":"https://doi.org/10.1145/3626233","mag":"2954747304"},"language":"en","primary_location":{"id":"doi:10.1145/3626233","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3626233","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3626233","source":{"id":"https://openalex.org/S157921468","display_name":"ACM Computing Surveys","issn_l":"0360-0300","issn":["0360-0300","1557-7341"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ACM Computing Surveys","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://dl.acm.org/doi/pdf/10.1145/3626233","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041993379","display_name":"Thomas Heinis","orcid":"https://orcid.org/0000-0002-7470-2123"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Thomas Heinis","raw_affiliation_strings":["Imperial College London, UK"],"raw_orcid":"https://orcid.org/0000-0002-7470-2123","affiliations":[{"raw_affiliation_string":"Imperial College London, UK","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020767088","display_name":"Roman Sokolovskii","orcid":"https://orcid.org/0000-0002-3156-5923"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Roman Sokolovskii","raw_affiliation_strings":["Imperial College London, UK"],"raw_orcid":"https://orcid.org/0000-0002-3156-5923","affiliations":[{"raw_affiliation_string":"Imperial College London, UK","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064886767","display_name":"Jamie J. Alnasir","orcid":"https://orcid.org/0000-0001-8164-4753"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jamie J. Alnasir","raw_affiliation_strings":["Imperial College London, UK"],"raw_orcid":"https://orcid.org/0000-0001-8164-4753","affiliations":[{"raw_affiliation_string":"Imperial College London, UK","institution_ids":["https://openalex.org/I47508984"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I47508984"],"apc_list":null,"apc_paid":null,"fwci":2.0759,"has_fulltext":true,"cited_by_count":22,"citation_normalized_percentile":{"value":0.87295835,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"56","issue":"4","first_page":"1","last_page":"30"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12784","display_name":"Modular Robots and Swarm Intelligence","score":0.9708999991416931,"subfield":{"id":"https://openalex.org/subfields/2210","display_name":"Mechanical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/encoding","display_name":"Encoding (memory)","score":0.8093773722648621},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8023878931999207},{"id":"https://openalex.org/keywords/computer-data-storage","display_name":"Computer data storage","score":0.5127395391464233},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.4678182303905487},{"id":"https://openalex.org/keywords/dna-computing","display_name":"DNA computing","score":0.4407809376716614},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.43801647424697876},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.34861570596694946},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.32982033491134644},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13528379797935486},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.13012349605560303},{"id":"https://openalex.org/keywords/computer-hardware","display_name":"Computer hardware","score":0.10663929581642151},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.0893625020980835}],"concepts":[{"id":"https://openalex.org/C125411270","wikidata":"https://www.wikidata.org/wiki/Q18653","display_name":"Encoding (memory)","level":2,"score":0.8093773722648621},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8023878931999207},{"id":"https://openalex.org/C194739806","wikidata":"https://www.wikidata.org/wiki/Q66221","display_name":"Computer data storage","level":2,"score":0.5127395391464233},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.4678182303905487},{"id":"https://openalex.org/C82047324","wikidata":"https://www.wikidata.org/wiki/Q177126","display_name":"DNA computing","level":3,"score":0.4407809376716614},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.43801647424697876},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.34861570596694946},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.32982033491134644},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13528379797935486},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.13012349605560303},{"id":"https://openalex.org/C9390403","wikidata":"https://www.wikidata.org/wiki/Q3966","display_name":"Computer hardware","level":1,"score":0.10663929581642151},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0893625020980835},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1145/3626233","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3626233","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3626233","source":{"id":"https://openalex.org/S157921468","display_name":"ACM Computing Surveys","issn_l":"0360-0300","issn":["0360-0300","1557-7341"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ACM Computing Surveys","raw_type":"journal-article"},{"id":"pmh:oai:arXiv.org:1906.11062","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1906.11062","pdf_url":"https://arxiv.org/pdf/1906.11062","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:spiral.imperial.ac.uk:10044/1/77579","is_oa":true,"landing_page_url":"http://hdl.handle.net/10044/1/77579","pdf_url":"http://hdl.handle.net/10044/1/77579","source":{"id":"https://openalex.org/S4306401396","display_name":"Spiral (Imperial College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I47508984","host_organization_name":"Imperial College London","host_organization_lineage":["https://openalex.org/I47508984"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Working Paper"}],"best_oa_location":{"id":"doi:10.1145/3626233","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3626233","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3626233","source":{"id":"https://openalex.org/S157921468","display_name":"ACM Computing Surveys","issn_l":"0360-0300","issn":["0360-0300","1557-7341"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ACM Computing Surveys","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2954747304.pdf","grobid_xml":"https://content.openalex.org/works/W2954747304.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W1496987857","https://openalex.org/W1643629030","https://openalex.org/W1964604871","https://openalex.org/W1983962667","https://openalex.org/W2014680464","https://openalex.org/W2025177415","https://openalex.org/W2025383314","https://openalex.org/W2049481245","https://openalex.org/W2055043387","https://openalex.org/W2060108852","https://openalex.org/W2074880981","https://openalex.org/W2081311564","https://openalex.org/W2111699652","https://openalex.org/W2114487425","https://openalex.org/W2126557729","https://openalex.org/W2128765501","https://openalex.org/W2131088968","https://openalex.org/W2150498905","https://openalex.org/W2162980030","https://openalex.org/W2333320475","https://openalex.org/W2592122940","https://openalex.org/W2788257106","https://openalex.org/W2908077121","https://openalex.org/W2944582089","https://openalex.org/W2951269465","https://openalex.org/W2989600529","https://openalex.org/W2993276217","https://openalex.org/W3001660245","https://openalex.org/W3034933099","https://openalex.org/W3037026856","https://openalex.org/W3042993760","https://openalex.org/W3092537845","https://openalex.org/W3168942844","https://openalex.org/W4237064274","https://openalex.org/W4245811414","https://openalex.org/W4389615664"],"related_works":["https://openalex.org/W2049083263","https://openalex.org/W2265877813","https://openalex.org/W4255246195","https://openalex.org/W2126256889","https://openalex.org/W2372042166","https://openalex.org/W2388931296","https://openalex.org/W2041198660","https://openalex.org/W1599318274","https://openalex.org/W2007792919","https://openalex.org/W2106373246"],"abstract_inverted_index":{"The":[0],"yearly":[1],"global":[2],"production":[3],"of":[4,12,31,36,47,53,64,74,84,129,156,201,249],"data":[5,113,152,163,196],"is":[6,43,57,69,88,95,118,136],"growing":[7],"exponentially,":[8],"outpacing":[9],"the":[10,61,221,232,245,250],"capacity":[11],"existing":[13,190],"storage":[14,40,135],"media,":[15],"such":[16],"as":[17,34,229,231],"tape":[18],"and":[19,21,49,90,93,100,144,162,171,210,225,247],"disk,":[20],"surpassing":[22],"our":[23],"ability":[24],"to":[25,82,97,131,139,150,153,179,181,206,212],"store":[26],"it.":[27],"DNA":[28,42,87,108,121,134,198],"storage\u2014the":[29],"representation":[30],"arbitrary":[32,195],"information":[33,117,223],"sequences":[35,128,155],"nucleotides\u2014offers":[37],"a":[38,51,72,123,140],"promising":[39],"medium.":[41],"nature\u2019s":[44],"information-storage":[45],"molecule":[46],"choice":[48],"has":[50],"number":[52],"key":[54],"properties:":[55],"It":[56],"extremely":[58],"dense,":[59],"offering":[60],"theoretical":[62],"possibility":[63],"storing":[65],"455":[66],"EB/g;":[67],"it":[68,94],"durable,":[70],"with":[71],"half-life":[73],"approximately":[75],"520":[76],"years":[77,85],"that":[78,105,174],"can":[79],"be":[80,182],"increased":[81],"thousands":[83],"when":[86],"chilled":[89],"stored":[91],"dry;":[92],"amenable":[96],"automated":[98],"synthesis":[99],"sequencing.":[101],"Furthermore,":[102],"biochemical":[103],"processes":[104],"act":[106],"on":[107,188,220],"potentially":[109],"enable":[110],"highly":[111],"parallel":[112],"manipulation.":[114,164],"While":[115],"biological":[116,208],"encoded":[119],"in":[120,193,199],"via":[122],"specific":[124],"mapping":[125],"from":[126],"triplet":[127],"nucleotides":[130,157],"amino":[132],"acids,":[133],"not":[137],"limited":[138],"single":[141],"encoding":[142,176,194,203,218,251],"scheme,":[143],"there":[145,166],"are":[146,167],"many":[147],"possible":[148],"ways":[149],"map":[151],"chemical":[154],"for":[158],"synthesis,":[159],"storage,":[160],"retrieval,":[161],"However,":[165],"several":[168],"biological,":[169],"error-tolerance,":[170],"information-retrieval":[172],"considerations":[173],"an":[175],"scheme":[177],"needs":[178],"address":[180,207],"viable.":[183],"This":[184],"comprehensive":[185],"review":[186],"focuses":[187],"comparing":[189],"work":[191],"done":[192],"within":[197],"terms":[200],"their":[202],"schemes,":[204],"methods":[205],"constraints,":[209],"measures":[211],"provide":[213],"error":[214],"correction.":[215],"We":[216,242],"compare":[217],"approaches":[219],"overall":[222],"density":[224],"coverage":[226],"they":[227,235],"achieve,":[228],"well":[230],"data-retrieval":[233],"method":[234],"use":[236],"(i.e.,":[237],"sequential":[238],"or":[239],"random":[240],"access).":[241],"also":[243],"discuss":[244],"background":[246],"evolution":[248],"schemes.":[252]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":13},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":1}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
