{"id":"https://openalex.org/W4392846105","doi":"https://doi.org/10.1145/3625007.3629127","title":"KoExPubMed: A Tool for Effective and Customized Knowledge Extraction from PubMed","display_name":"KoExPubMed: A Tool for Effective and Customized Knowledge Extraction from PubMed","publication_year":2023,"publication_date":"2023-11-06","ids":{"openalex":"https://openalex.org/W4392846105","doi":"https://doi.org/10.1145/3625007.3629127"},"language":"en","primary_location":{"id":"doi:10.1145/3625007.3629127","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3625007.3629127","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3625007.3629127","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the International Conference on Advances in Social Networks Analysis and Mining","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://dl.acm.org/doi/pdf/10.1145/3625007.3629127","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043340317","display_name":"Tansel \u00d6zyer","orcid":"https://orcid.org/0000-0002-2529-5533"},"institutions":[{"id":"https://openalex.org/I3125470973","display_name":"Istanbul Medipol University","ror":"https://ror.org/037jwzz50","country_code":"TR","type":"education","lineage":["https://openalex.org/I3125470973"]},{"id":"https://openalex.org/I4387152971","display_name":"Ankara Medipol \u00dcniversitesi","ror":"https://ror.org/01c9cnw16","country_code":null,"type":"education","lineage":["https://openalex.org/I4387152971"]}],"countries":["TR"],"is_corresponding":true,"raw_author_name":"Tansel Ozyer","raw_affiliation_strings":["Ankara Medipol University, ankara, Turkey"],"affiliations":[{"raw_affiliation_string":"Ankara Medipol University, ankara, Turkey","institution_ids":["https://openalex.org/I3125470973","https://openalex.org/I4387152971"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066265052","display_name":"Reda Alhajj","orcid":"https://orcid.org/0000-0001-6657-9738"},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Reda Alhajj","raw_affiliation_strings":["University of Calgary, Calgary, AB, Canada"],"affiliations":[{"raw_affiliation_string":"University of Calgary, Calgary, AB, Canada","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020310155","display_name":"Jon Rokne","orcid":"https://orcid.org/0000-0002-3439-2917"},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Jon Rokne","raw_affiliation_strings":["University of Calgary, Calgary, AB, Canada"],"affiliations":[{"raw_affiliation_string":"University of Calgary, Calgary, AB, Canada","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079902585","display_name":"Kashfia Sailunaz","orcid":"https://orcid.org/0000-0001-8751-4108"},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Kashfia Sailunaz","raw_affiliation_strings":["University of Calgary, Canada, AB, Canada"],"affiliations":[{"raw_affiliation_string":"University of Calgary, Canada, AB, Canada","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111147776","display_name":"Gabi Jurca","orcid":null},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Gabi Jurca","raw_affiliation_strings":["University of Calgary, Canada, AB, Canada"],"affiliations":[{"raw_affiliation_string":"University of Calgary, Canada, AB, Canada","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089374855","display_name":"Deniz Be\u015ftepe","orcid":"https://orcid.org/0000-0003-1933-410X"},"institutions":[{"id":"https://openalex.org/I3125470973","display_name":"Istanbul Medipol University","ror":"https://ror.org/037jwzz50","country_code":"TR","type":"education","lineage":["https://openalex.org/I3125470973"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Deniz Bestepe","raw_affiliation_strings":["Istanbul Medipol University, Istanbul, Turkiye"],"affiliations":[{"raw_affiliation_string":"Istanbul Medipol University, Istanbul, Turkiye","institution_ids":["https://openalex.org/I3125470973"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5094162753","display_name":"Lama Alhajj","orcid":"https://orcid.org/0009-0003-5109-0712"},"institutions":[{"id":"https://openalex.org/I3125470973","display_name":"Istanbul Medipol University","ror":"https://ror.org/037jwzz50","country_code":"TR","type":"education","lineage":["https://openalex.org/I3125470973"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Lama Alhajj","raw_affiliation_strings":["Istanbul Medipol University, Istanbul, Turkiye"],"affiliations":[{"raw_affiliation_string":"Istanbul Medipol University, Istanbul, Turkiye","institution_ids":["https://openalex.org/I3125470973"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5094162840","display_name":"Busra Kaartay","orcid":null},"institutions":[{"id":"https://openalex.org/I4210152669","display_name":"Teknoloji Arastirma ve Gelistirme Endustriyel Urunler Bilisim Teknolojileri San Tic","ror":"https://ror.org/040nc8096","country_code":"TR","type":"company","lineage":["https://openalex.org/I4210152669"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Busra Kaartay","raw_affiliation_strings":["Yapi Kredi Teknoloji, Istanbul, Turkiye"],"affiliations":[{"raw_affiliation_string":"Yapi Kredi Teknoloji, Istanbul, Turkiye","institution_ids":["https://openalex.org/I4210152669"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5043340317"],"corresponding_institution_ids":["https://openalex.org/I3125470973","https://openalex.org/I4387152971"],"apc_list":null,"apc_paid":null,"fwci":0.1539,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.61199404,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"431","last_page":"435"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.972000002861023,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.972000002861023,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7104820013046265},{"id":"https://openalex.org/keywords/extraction","display_name":"Extraction (chemistry)","score":0.4919585883617401},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3616166114807129}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7104820013046265},{"id":"https://openalex.org/C4725764","wikidata":"https://www.wikidata.org/wiki/Q844704","display_name":"Extraction (chemistry)","level":2,"score":0.4919585883617401},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3616166114807129},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3625007.3629127","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3625007.3629127","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3625007.3629127","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the International Conference on Advances in Social Networks Analysis and Mining","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.1145/3625007.3629127","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3625007.3629127","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3625007.3629127","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the International Conference on Advances in Social Networks Analysis and Mining","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4392846105.pdf","grobid_xml":"https://content.openalex.org/works/W4392846105.grobid-xml"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W422406947","https://openalex.org/W1496929818","https://openalex.org/W2023172750","https://openalex.org/W2187207722","https://openalex.org/W2555756618","https://openalex.org/W2985087437","https://openalex.org/W6600032712","https://openalex.org/W6600783858","https://openalex.org/W6854364075"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W4391913857","https://openalex.org/W2350741829","https://openalex.org/W2530322880"],"abstract_inverted_index":{"An":[0],"exponential":[1],"growth":[2],"in":[3,6,12,54,216],"the":[4,9,31,43,57,93,131,134,144,148,167,179,219],"literature":[5,11],"general":[7],"and":[8,22,62,76,92,108,115,120,123,147,156,199,211],"medical":[10],"particular":[13,49],"raises":[14],"a":[15,73,137,182,189],"need":[16,180],"for":[17,142,154,160,166,173,181],"effective":[18,61],"intelligent":[19],"analysis":[20,64],"strategies":[21],"tools":[23],"to":[24,28,42,130,203,209],"provide":[25,38],"valuable":[26,208],"insights":[27],"researchers":[29,210],"about":[30],"current":[32],"evolving":[33],"literature.":[34],"While":[35],"existing":[36],"applications":[37],"more":[39,74],"specific":[40],"approaches":[41],"problem,":[44],"such":[45,87],"as":[46,88],"focusing":[47],"on":[48],"genome":[50],"or":[51],"protein":[52],"information,":[53],"this":[55],"paper,":[56],"proposed":[58],"application":[59,99,191],"provides":[60,136],"detailed":[63],"of":[65,85,101,139,162,195,221],"PubMed.":[66],"The":[67,97],"developed":[68,98],"tool,":[69,186],"named":[70],"KoExPubMed,":[71],"follows":[72],"generalized":[75,183],"holistic":[77],"way":[78],"by":[79],"taking":[80],"into":[81],"consideration":[82],"different":[83],"types":[84],"information":[86,114,126,146],"authors,":[89,163],"countries,":[90,157],"genes,":[91],"interactions":[94],"between":[95],"them.":[96],"consists":[100],"four":[102],"main":[103],"components;":[104],"(1)":[105],"keyword":[106],"search":[107],"ID":[109],"extraction,":[110,122],"(2)":[111],"PubMed":[112,206],"article":[113],"abstract":[116],"retrieval,":[117],"(3)":[118],"country":[119],"address":[121],"(4)":[124],"gene":[125,174],"extraction.":[127],"In":[128],"addition":[129],"fundamental":[132],"components,":[133],"tool":[135],"variety":[138],"visualization":[140],"options":[141],"showing":[143],"extracted":[145],"related":[149],"associations,":[150],"including":[151],"line":[152],"charts":[153,159,172],"densities":[155],"chord":[158],"collaborations":[161],"network":[164],"graphs":[165],"genes":[168],"mentioned":[169],"together,":[170],"bubble":[171],"frequencies,":[175],"etc.":[176],"By":[177],"addressing":[178],"data":[184,197],"mining":[185,198],"we":[187],"propose":[188],"comprehensive":[190],"which":[192],"is":[193],"capable":[194],"employing":[196],"machine":[200],"learning":[201],"techniques":[202],"extract":[204],"from":[205],"knowledge":[207],"practitioners":[212],"who":[213],"are":[214],"interested":[215],"closely":[217],"investigating":[218],"achievements":[220],"others.":[222]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
