{"id":"https://openalex.org/W4387337771","doi":"https://doi.org/10.1145/3617023.3617038","title":"WSI2ML \u2013 An Open-Source Whole Slide Image Annotation Software for Machine Learning Applications","display_name":"WSI2ML \u2013 An Open-Source Whole Slide Image Annotation Software for Machine Learning Applications","publication_year":2023,"publication_date":"2023-10-04","ids":{"openalex":"https://openalex.org/W4387337771","doi":"https://doi.org/10.1145/3617023.3617038"},"language":"en","primary_location":{"id":"doi:10.1145/3617023.3617038","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1145/3617023.3617038","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 29th Brazilian Symposium on Multimedia and the Web","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078393821","display_name":"Luan V. C. Martins","orcid":"https://orcid.org/0000-0002-3324-9844"},"institutions":[{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Luan V. C. Martins","raw_affiliation_strings":["Institute of Mathematics and Computer Sciences, University of S\u00e3o Paulo (USP), Brazil"],"raw_orcid":"https://orcid.org/0000-0002-3324-9844","affiliations":[{"raw_affiliation_string":"Institute of Mathematics and Computer Sciences, University of S\u00e3o Paulo (USP), Brazil","institution_ids":["https://openalex.org/I17974374"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082066120","display_name":"Adriana Passos Bueno","orcid":"https://orcid.org/0000-0002-8671-2847"},"institutions":[{"id":"https://openalex.org/I3019035496","display_name":"AC Camargo Hospital","ror":"https://ror.org/03025ga79","country_code":"BR","type":"healthcare","lineage":["https://openalex.org/I3019035496"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Adriana Passos Bueno","raw_affiliation_strings":["Laboratory of Computational Biology Bioinformatics, CIPE/A.C. Camargo Cancer Center, Brazil"],"raw_orcid":"https://orcid.org/0000-0002-8671-2847","affiliations":[{"raw_affiliation_string":"Laboratory of Computational Biology Bioinformatics, CIPE/A.C. Camargo Cancer Center, Brazil","institution_ids":["https://openalex.org/I3019035496"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081114432","display_name":"Alexandre Defelicibus","orcid":"https://orcid.org/0000-0002-3484-6317"},"institutions":[{"id":"https://openalex.org/I3019035496","display_name":"AC Camargo Hospital","ror":"https://ror.org/03025ga79","country_code":"BR","type":"healthcare","lineage":["https://openalex.org/I3019035496"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Alexandre Defelicibus","raw_affiliation_strings":["Laboratory of Computational Biology Bioinformatics, CIPE/A.C. Camargo Cancer Center, Brazil"],"raw_orcid":"https://orcid.org/0000-0002-3484-6317","affiliations":[{"raw_affiliation_string":"Laboratory of Computational Biology Bioinformatics, CIPE/A.C. Camargo Cancer Center, Brazil","institution_ids":["https://openalex.org/I3019035496"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087196517","display_name":"Rodrigo D. Drummond","orcid":"https://orcid.org/0000-0002-9000-8115"},"institutions":[{"id":"https://openalex.org/I3019035496","display_name":"AC Camargo Hospital","ror":"https://ror.org/03025ga79","country_code":"BR","type":"healthcare","lineage":["https://openalex.org/I3019035496"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Rodrigo D. Drummond","raw_affiliation_strings":["Laboratory of Computational Biology Bioinformatics, CIPE/A.C. Camargo Cancer Center, Brazil"],"raw_orcid":"https://orcid.org/0000-0002-9000-8115","affiliations":[{"raw_affiliation_string":"Laboratory of Computational Biology Bioinformatics, CIPE/A.C. Camargo Cancer Center, Brazil","institution_ids":["https://openalex.org/I3019035496"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048107289","display_name":"Renan Valieris","orcid":"https://orcid.org/0000-0002-8402-3175"},"institutions":[{"id":"https://openalex.org/I3019035496","display_name":"AC Camargo Hospital","ror":"https://ror.org/03025ga79","country_code":"BR","type":"healthcare","lineage":["https://openalex.org/I3019035496"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Renan Valieris","raw_affiliation_strings":["Laboratory of Computational Biology Bioinformatics, CIPE/A.C. Camargo Cancer Center, Brazil"],"raw_orcid":"https://orcid.org/0000-0002-8402-3175","affiliations":[{"raw_affiliation_string":"Laboratory of Computational Biology Bioinformatics, CIPE/A.C. Camargo Cancer Center, Brazil","institution_ids":["https://openalex.org/I3019035496"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039543872","display_name":"Yu-tao Zhu","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yu-Tao Zhu","raw_affiliation_strings":["China Branch of BRICS Institute of Future Networks, China"],"raw_orcid":"https://orcid.org/0009-0009-4361-8517","affiliations":[{"raw_affiliation_string":"China Branch of BRICS Institute of Future Networks, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036545708","display_name":"Israel Tojal da Silva","orcid":"https://orcid.org/0000-0002-4687-1499"},"institutions":[{"id":"https://openalex.org/I3019035496","display_name":"AC Camargo Hospital","ror":"https://ror.org/03025ga79","country_code":"BR","type":"healthcare","lineage":["https://openalex.org/I3019035496"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Israel Tojal Da Silva","raw_affiliation_strings":["Laboratory of Computational Biology Bioinformatics, CIPE/A.C. Camargo Cancer Center, Brazil"],"raw_orcid":"https://orcid.org/0000-0002-4687-1499","affiliations":[{"raw_affiliation_string":"Laboratory of Computational Biology Bioinformatics, CIPE/A.C. Camargo Cancer Center, Brazil","institution_ids":["https://openalex.org/I3019035496"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100697945","display_name":"Liang Zhao","orcid":"https://orcid.org/0000-0002-1502-6604"},"institutions":[{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Liang Zhao","raw_affiliation_strings":["Faculty of Philosophy, Science, and Letters, University of S\u00e3o Paulo (USP), Brazil"],"raw_orcid":"https://orcid.org/0000-0002-1502-6604","affiliations":[{"raw_affiliation_string":"Faculty of Philosophy, Science, and Letters, University of S\u00e3o Paulo (USP), Brazil","institution_ids":["https://openalex.org/I17974374"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.1632,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.56535704,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"104","last_page":"109"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8197647333145142},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.789914071559906},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.7725135684013367},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6422037482261658},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5962531566619873},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5938194990158081},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.5642180442810059},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5159986019134521},{"id":"https://openalex.org/keywords/software-documentation","display_name":"Software documentation","score":0.4693537652492523},{"id":"https://openalex.org/keywords/software-development","display_name":"Software development","score":0.31550610065460205},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2971212863922119},{"id":"https://openalex.org/keywords/software-construction","display_name":"Software construction","score":0.23354706168174744},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.18642866611480713},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.16190287470817566},{"id":"https://openalex.org/keywords/systems-engineering","display_name":"Systems engineering","score":0.10390833020210266}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8197647333145142},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.789914071559906},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.7725135684013367},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6422037482261658},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5962531566619873},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5938194990158081},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.5642180442810059},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5159986019134521},{"id":"https://openalex.org/C81587897","wikidata":"https://www.wikidata.org/wiki/Q181702","display_name":"Software documentation","level":5,"score":0.4693537652492523},{"id":"https://openalex.org/C529173508","wikidata":"https://www.wikidata.org/wiki/Q638608","display_name":"Software development","level":3,"score":0.31550610065460205},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2971212863922119},{"id":"https://openalex.org/C186846655","wikidata":"https://www.wikidata.org/wiki/Q3398377","display_name":"Software construction","level":4,"score":0.23354706168174744},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.18642866611480713},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.16190287470817566},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.10390833020210266},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3617023.3617038","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1145/3617023.3617038","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 29th Brazilian Symposium on Multimedia and the Web","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.41999998688697815,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":12,"referenced_works":["https://openalex.org/W1977653087","https://openalex.org/W2108598243","https://openalex.org/W2132162500","https://openalex.org/W2194775991","https://openalex.org/W2234666690","https://openalex.org/W2594258169","https://openalex.org/W2911471795","https://openalex.org/W3029162552","https://openalex.org/W3121575412","https://openalex.org/W3144167624","https://openalex.org/W3175191608","https://openalex.org/W4312443924"],"related_works":["https://openalex.org/W1975647310","https://openalex.org/W2033083755","https://openalex.org/W2884925033","https://openalex.org/W2070076995","https://openalex.org/W2764664989","https://openalex.org/W2955439455","https://openalex.org/W2411980894","https://openalex.org/W3020062517","https://openalex.org/W2915114672","https://openalex.org/W2465647915"],"abstract_inverted_index":{"Machine":[0],"learning":[1],"(ML)":[2],"has":[3],"emerged":[4],"as":[5],"a":[6,21,27,49,54,77,101,106],"powerful":[7],"tool":[8],"for":[9,29,58,80],"improving":[10],"the":[11,31,73,88,96,118],"clinical":[12],"pathology":[13,61],"routine;":[14],"however,":[15],"developing":[16],"novel":[17,107],"ML":[18,39,59,84],"research":[19,62,110],"requires":[20],"complex":[22],"multidisciplinary":[23],"team":[24],"effort.":[25],"Therefore,":[26],"software":[28,75],"tackling":[30],"challenges":[32],"of":[33,83,92],"effectively":[34],"annotating,":[35],"building,":[36],"and":[37,90,125],"validating":[38],"models":[40],"is":[41,113,130],"desirable.":[42],"In":[43],"this":[44],"work":[45],"we":[46],"present":[47],"WSI2ML,":[48],"web-based":[50],"platform":[51],"that":[52,112],"provides":[53,76],"friendly":[55],"interface":[56],"suited":[57],"computational":[60],"to":[63,68],"be":[64],"easily":[65],"performed.":[66],"Compared":[67],"similar":[69],"tools":[70],"currently":[71,114],"available,":[72],"proposed":[74],"complete":[78],"toolset":[79],"each":[81],"stage":[82],"workflow.":[85],"We":[86],"demonstrate":[87],"usefulness":[89],"functionality":[91],"WSI2ML":[93],"by":[94],"analyzing":[95],"performance":[97],"results":[98],"obtained":[99],"in":[100],"tissue":[102],"recognition":[103],"task":[104],"using":[105],"gastric":[108],"cancer":[109],"dataset":[111],"being":[115],"developed":[116],"with":[117],"tool.":[119],"The":[120],"software,":[121],"documentation,":[122],"installation":[123],"instructions":[124],"related":[126],"annotation":[127],"handling":[128],"library":[129],"freely":[131],"available":[132],"at":[133],"https://luanvcmartins.github.io/WSI2ML/.":[134]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
