{"id":"https://openalex.org/W4389670858","doi":"https://doi.org/10.1145/3613347.3613362","title":"Regularized Generalized Linear Models to Disclose Host-Microbiome Associations in Colorectal Cancer","display_name":"Regularized Generalized Linear Models to Disclose Host-Microbiome Associations in Colorectal Cancer","publication_year":2023,"publication_date":"2023-07-14","ids":{"openalex":"https://openalex.org/W4389670858","doi":"https://doi.org/10.1145/3613347.3613362"},"language":"en","primary_location":{"id":"doi:10.1145/3613347.3613362","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3613347.3613362","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3613347.3613362","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2023 6th International Conference on Mathematics and Statistics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://dl.acm.org/doi/pdf/10.1145/3613347.3613362","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051358700","display_name":"Eliana Ibrahimi","orcid":"https://orcid.org/0000-0003-0956-215X"},"institutions":[{"id":"https://openalex.org/I68784830","display_name":"University of Tirana","ror":"https://ror.org/03g9v2404","country_code":"AL","type":"education","lineage":["https://openalex.org/I68784830"]}],"countries":["AL"],"is_corresponding":false,"raw_author_name":"Eliana Ibrahimi","raw_affiliation_strings":["Department of Biology, University of Tirana, Albania"],"raw_orcid":"https://orcid.org/0000-0003-0956-215X","affiliations":[{"raw_affiliation_string":"Department of Biology, University of Tirana, Albania","institution_ids":["https://openalex.org/I68784830"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015790850","display_name":"Mina Norouzirad","orcid":"https://orcid.org/0000-0003-0311-6888"},"institutions":[{"id":"https://openalex.org/I83558840","display_name":"Universidade Nova de Lisboa","ror":"https://ror.org/02xankh89","country_code":"PT","type":"education","lineage":["https://openalex.org/I83558840"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Mina Norouzirad","raw_affiliation_strings":["Center for Mathematics and Applications (NOVA Math), NOVA School of Science and Technology (NOVA SST), Portugal"],"raw_orcid":"https://orcid.org/0000-0003-0311-6888","affiliations":[{"raw_affiliation_string":"Center for Mathematics and Applications (NOVA Math), NOVA School of Science and Technology (NOVA SST), Portugal","institution_ids":["https://openalex.org/I83558840"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5093480570","display_name":"Melisa Meto","orcid":"https://orcid.org/0000-0003-3879-593X"},"institutions":[{"id":"https://openalex.org/I68784830","display_name":"University of Tirana","ror":"https://ror.org/03g9v2404","country_code":"AL","type":"education","lineage":["https://openalex.org/I68784830"]}],"countries":["AL"],"is_corresponding":false,"raw_author_name":"Melisa Meto","raw_affiliation_strings":["Department of Biology, University of Tirana, Albania"],"raw_orcid":"https://orcid.org/0000-0003-3879-593X","affiliations":[{"raw_affiliation_string":"Department of Biology, University of Tirana, Albania","institution_ids":["https://openalex.org/I68784830"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100611054","display_name":"Marta B. Lopes","orcid":"https://orcid.org/0000-0002-4135-1857"},"institutions":[{"id":"https://openalex.org/I83558840","display_name":"Universidade Nova de Lisboa","ror":"https://ror.org/02xankh89","country_code":"PT","type":"education","lineage":["https://openalex.org/I83558840"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Marta B. Lopes","raw_affiliation_strings":["Center for Mathematics and Applications (NOVA Math), NOVA School of Science and Technology (NOVA SST), Portugal and \rResearch and Development Unit for Mechanical and Industrial Engineering (UNIDEMI), NOVA School of Science and Technology (NOVA SST), Portugal"],"raw_orcid":"https://orcid.org/0000-0002-4135-1857","affiliations":[{"raw_affiliation_string":"Center for Mathematics and Applications (NOVA Math), NOVA School of Science and Technology (NOVA SST), Portugal and \rResearch and Development Unit for Mechanical and Industrial Engineering (UNIDEMI), NOVA School of Science and Technology (NOVA SST), Portugal","institution_ids":["https://openalex.org/I83558840"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.1427,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.601239,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"98","last_page":"102"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10552","display_name":"Colorectal Cancer Screening and Detection","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9639999866485596,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.8150687217712402},{"id":"https://openalex.org/keywords/elastic-net-regularization","display_name":"Elastic net regularization","score":0.7695986032485962},{"id":"https://openalex.org/keywords/lasso","display_name":"Lasso (programming language)","score":0.7093293070793152},{"id":"https://openalex.org/keywords/colorectal-cancer","display_name":"Colorectal cancer","score":0.6528820991516113},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5580694675445557},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5225610136985779},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.44987690448760986},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.446625292301178},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.40948575735092163},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.33514320850372314},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2912198007106781},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.28958022594451904},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.28396889567375183},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.22750401496887207},{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.08848807215690613},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.06760233640670776}],"concepts":[{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.8150687217712402},{"id":"https://openalex.org/C203868755","wikidata":"https://www.wikidata.org/wiki/Q5353562","display_name":"Elastic net regularization","level":3,"score":0.7695986032485962},{"id":"https://openalex.org/C37616216","wikidata":"https://www.wikidata.org/wiki/Q3218363","display_name":"Lasso (programming language)","level":2,"score":0.7093293070793152},{"id":"https://openalex.org/C526805850","wikidata":"https://www.wikidata.org/wiki/Q188874","display_name":"Colorectal cancer","level":3,"score":0.6528820991516113},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5580694675445557},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5225610136985779},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.44987690448760986},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.446625292301178},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.40948575735092163},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.33514320850372314},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2912198007106781},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.28958022594451904},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.28396889567375183},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.22750401496887207},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.08848807215690613},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.06760233640670776},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3613347.3613362","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3613347.3613362","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3613347.3613362","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2023 6th International Conference on Mathematics and Statistics","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.1145/3613347.3613362","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3613347.3613362","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3613347.3613362","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2023 6th International Conference on Mathematics and Statistics","raw_type":"proceedings-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.550000011920929}],"awards":[{"id":"https://openalex.org/G1150610575","display_name":"NOVA Laboratory for Computer Science and Informatics","funder_award_id":"UIDP/04516/2020","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G1878529617","display_name":"Center for Mathematics and Applications","funder_award_id":"UIDB/00297/2020","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G2885107321","display_name":null,"funder_award_id":"CEECINST/00102/2018","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G3128112957","display_name":null,"funder_award_id":"UIDB/00297/2020","funder_id":"https://openalex.org/F4320331406","funder_display_name":"NOVA Laboratory for Computer Science and Informatics"},{"id":"https://openalex.org/G5091561280","display_name":null,"funder_award_id":"UIDP/04516/2020","funder_id":"https://openalex.org/F4320331406","funder_display_name":"NOVA Laboratory for Computer Science and Informatics"}],"funders":[{"id":"https://openalex.org/F4320331406","display_name":"NOVA Laboratory for Computer Science and Informatics","ror":null},{"id":"https://openalex.org/F4320334779","display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","ror":"https://ror.org/00snfqn58"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4389670858.pdf","grobid_xml":"https://content.openalex.org/works/W4389670858.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W1811186957","https://openalex.org/W1971000774","https://openalex.org/W2089246633","https://openalex.org/W2122825543","https://openalex.org/W2130725058","https://openalex.org/W2135046866","https://openalex.org/W2336937992","https://openalex.org/W2960881484","https://openalex.org/W2969519591","https://openalex.org/W3013592304","https://openalex.org/W3080176970","https://openalex.org/W4205681787","https://openalex.org/W4221107037","https://openalex.org/W4225911078","https://openalex.org/W4255455317","https://openalex.org/W4294541781","https://openalex.org/W4309076662","https://openalex.org/W6959643953"],"related_works":["https://openalex.org/W2468272465","https://openalex.org/W2429564919","https://openalex.org/W757986597","https://openalex.org/W4212910148","https://openalex.org/W4210804200","https://openalex.org/W4213314600","https://openalex.org/W4285814086","https://openalex.org/W3123944750","https://openalex.org/W2787225985","https://openalex.org/W2999956516"],"abstract_inverted_index":{"Recent":[0],"studies":[1],"have":[2],"shown":[3],"that":[4],"gut":[5,52],"microbiome":[6,53,99],"is":[7,63],"associated":[8],"with":[9,101],"colorectal":[10],"cancer":[11],"(CRC)":[12],"progression":[13],"and":[14,27,57,84,103],"anti-cancer":[15],"therapy":[16,123],"efficacy.":[17],"This":[18],"study":[19],"aims":[20],"to":[21,49,65,89,109,111,117],"optimize":[22],"the":[23,71,82,90,112],"ridge,":[24],"elastic":[25,85],"net,":[26],"lasso":[28,91],"regularized":[29],"generalized":[30],"linear":[31],"models":[32,46,87],"(GLM),":[33],"widely":[34],"used":[35,64],"for":[36,40,70],"supervised":[37],"machine":[38],"learning,":[39],"multiclass":[41],"classification":[42],"tasks":[43],"(healthy/adenoma/carcinoma).":[44],"The":[45,75],"are":[47,107],"applied":[48],"a":[50,78],"benchmark":[51],"dataset":[54],"using":[55],"raw":[56],"transformed":[58],"data.":[59],"A":[60],"cross-validation":[61],"procedure":[62],"select":[66],"an":[67],"optimal":[68],"value":[69],"shrinkage":[72],"parameter,":[73],"\u03bb.":[74],"results":[76],"show":[77],"higher":[79],"accuracy":[80],"of":[81,97,114],"ridge":[83],"net":[86],"compared":[88],"model.":[92],"We":[93],"confirm":[94],"known":[95],"associations":[96],"several":[98],"genera":[100],"CRC":[102],"adenoma.":[104],"These":[105],"findings":[106],"expected":[108],"contribute":[110],"definition":[113],"CRC-microbiome":[115],"signatures":[116],"be":[118],"further":[119],"validated":[120],"in":[121],"microbiome-related":[122],"studies.":[124]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
