{"id":"https://openalex.org/W4387763872","doi":"https://doi.org/10.1145/3608298.3608305","title":"Comparing the prediction performance of machine learning and deep learning methods for 3c-like protease cleavage sites","display_name":"Comparing the prediction performance of machine learning and deep learning methods for 3c-like protease cleavage sites","publication_year":2023,"publication_date":"2023-05-12","ids":{"openalex":"https://openalex.org/W4387763872","doi":"https://doi.org/10.1145/3608298.3608305"},"language":"en","primary_location":{"id":"doi:10.1145/3608298.3608305","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3608298.3608305","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 the 7th International Conference on Medical and Health Informatics (ICMHI)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013989292","display_name":"Lan-Ying Huang","orcid":"https://orcid.org/0009-0000-4598-6684"},"institutions":[{"id":"https://openalex.org/I162838928","display_name":"National Chung Hsing University","ror":"https://ror.org/05vn3ca78","country_code":"TW","type":"education","lineage":["https://openalex.org/I162838928"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Lan-Ying Huang","raw_affiliation_strings":["Ph.D. Program in Medical Biotechnology, National Chung Hsing University, Taichung, Taiwan, Taiwan"],"raw_orcid":"https://orcid.org/0009-0000-4598-6684","affiliations":[{"raw_affiliation_string":"Ph.D. Program in Medical Biotechnology, National Chung Hsing University, Taichung, Taiwan, Taiwan","institution_ids":["https://openalex.org/I162838928"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101613384","display_name":"Chi-Wei Chen","orcid":"https://orcid.org/0000-0002-5799-9017"},"institutions":[{"id":"https://openalex.org/I98298690","display_name":"I-Shou University","ror":"https://ror.org/04d7e4m76","country_code":"TW","type":"education","lineage":["https://openalex.org/I98298690"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chi-Wei Chen","raw_affiliation_strings":["Graduate Degree Program of Smart Healthcare &amp; Bioinformatics, I-Shou University, Kaohsiung, Taiwan, Taiwan and \rDepartment of Biomedical Engineering, I-Shou University, Kaohsiung, Taiwan, Taiwan"],"raw_orcid":"https://orcid.org/0000-0002-5799-9017","affiliations":[{"raw_affiliation_string":"Graduate Degree Program of Smart Healthcare &amp; Bioinformatics, I-Shou University, Kaohsiung, Taiwan, Taiwan and \rDepartment of Biomedical Engineering, I-Shou University, Kaohsiung, Taiwan, Taiwan","institution_ids":["https://openalex.org/I98298690"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101827448","display_name":"Kai-Po Chang","orcid":"https://orcid.org/0000-0003-1730-9728"},"institutions":[{"id":"https://openalex.org/I184693016","display_name":"China Medical University","ror":"https://ror.org/00v408z34","country_code":"TW","type":"education","lineage":["https://openalex.org/I184693016"]},{"id":"https://openalex.org/I4210126829","display_name":"China Medical University Hospital","ror":"https://ror.org/0368s4g32","country_code":"TW","type":"healthcare","lineage":["https://openalex.org/I4210126829"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Kai-Po Chang","raw_affiliation_strings":["Department of Pathology, School of Medicine, China Medical University, Taichung, Taiwan, Taiwan and \rDepartment of Pathology, China Medical University Hospital, Taichung , Taiwan, Taiwan"],"raw_orcid":"https://orcid.org/0000-0003-1730-9728","affiliations":[{"raw_affiliation_string":"Department of Pathology, School of Medicine, China Medical University, Taichung, Taiwan, Taiwan and \rDepartment of Pathology, China Medical University Hospital, Taichung , Taiwan, Taiwan","institution_ids":["https://openalex.org/I184693016","https://openalex.org/I4210126829"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024178640","display_name":"Yen-Wei Chu","orcid":"https://orcid.org/0000-0002-5525-4011"},"institutions":[{"id":"https://openalex.org/I162838928","display_name":"National Chung Hsing University","ror":"https://ror.org/05vn3ca78","country_code":"TW","type":"education","lineage":["https://openalex.org/I162838928"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Yen-Wei Chu","raw_affiliation_strings":["Institute of Genomics and Bioinformatics, National Chung Hsing University, Taichung, Taiwan, Taiwan and \rInstitute of Molecular Biology, National Chung Hsing University, Taichung, Taiwan, Taiwan"],"raw_orcid":"https://orcid.org/0000-0002-5525-4011","affiliations":[{"raw_affiliation_string":"Institute of Genomics and Bioinformatics, National Chung Hsing University, Taichung, Taiwan, Taiwan and \rInstitute of Molecular Biology, National Chung Hsing University, Taichung, Taiwan, Taiwan","institution_ids":["https://openalex.org/I162838928"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5013989292"],"corresponding_institution_ids":["https://openalex.org/I162838928"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.30108462,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"34","last_page":"38"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7957870960235596},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.7263018488883972},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.687787652015686},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.675330400466919},{"id":"https://openalex.org/keywords/test-set","display_name":"Test set","score":0.6515375971794128},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.6498904824256897},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.535921573638916},{"id":"https://openalex.org/keywords/training-set","display_name":"Training set","score":0.47951462864875793},{"id":"https://openalex.org/keywords/protease","display_name":"Protease","score":0.45145073533058167},{"id":"https://openalex.org/keywords/data-set","display_name":"Data set","score":0.41735729575157166},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.11726042628288269},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.09111720323562622}],"concepts":[{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7957870960235596},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.7263018488883972},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.687787652015686},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.675330400466919},{"id":"https://openalex.org/C169903167","wikidata":"https://www.wikidata.org/wiki/Q3985153","display_name":"Test set","level":2,"score":0.6515375971794128},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.6498904824256897},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.535921573638916},{"id":"https://openalex.org/C51632099","wikidata":"https://www.wikidata.org/wiki/Q3985153","display_name":"Training set","level":2,"score":0.47951462864875793},{"id":"https://openalex.org/C2776714187","wikidata":"https://www.wikidata.org/wiki/Q212410","display_name":"Protease","level":3,"score":0.45145073533058167},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.41735729575157166},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.11726042628288269},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.09111720323562622},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3608298.3608305","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3608298.3608305","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 the 7th International Conference on Medical and Health Informatics (ICMHI)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.5}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":12,"referenced_works":["https://openalex.org/W24553703","https://openalex.org/W1967195968","https://openalex.org/W2037263319","https://openalex.org/W2170747616","https://openalex.org/W2887029338","https://openalex.org/W3000260630","https://openalex.org/W3046280678","https://openalex.org/W3094827588","https://openalex.org/W3110781773","https://openalex.org/W3115414062","https://openalex.org/W4213345021","https://openalex.org/W4249920046"],"related_works":["https://openalex.org/W3185156046","https://openalex.org/W1999699871","https://openalex.org/W4225124612","https://openalex.org/W2043806667","https://openalex.org/W2786391746","https://openalex.org/W2021633306","https://openalex.org/W2006801911","https://openalex.org/W2033669961","https://openalex.org/W2971899271","https://openalex.org/W1990237101"],"abstract_inverted_index":{"The":[0,13],"impact":[1],"of":[2,48,66,113],"COVID-19":[3],"on":[4],"the":[5,17,26,37,46,64,87,97,100,105,111,114,119],"human":[6,91],"body":[7],"after":[8],"infection":[9],"requires":[10],"further":[11],"investigation.":[12],"protease":[14],"carried":[15],"by":[16],"virus":[18],"may":[19],"interact":[20],"with":[21],"cellular":[22],"proteins,":[23],"thereby":[24],"affecting":[25],"regulatory":[27],"pathways.":[28],"Machine":[29],"learning":[30,58,61,68],"can":[31],"provide":[32],"predictive":[33],"information":[34],"to":[35],"aid":[36],"research":[38],"design":[39],"in":[40],"such":[41],"studies.":[42],"This":[43],"study":[44],"examined":[45],"effectiveness":[47],"different":[49],"encoding":[50],"methods":[51,69],"for":[52,70],"training":[53,88],"models":[54],"using":[55],"traditional":[56],"machine":[57],"and":[59,79,90],"deep":[60,67],"methods.":[62],"Using":[63],"advantages":[65],"high-dimensional":[71],"data":[72,83],"analysis,":[73],"amino":[74],"acid":[75],"properties":[76],"were":[77,84,94],"extracted":[78],"classified.":[80],"Viral":[81],"polyprotein":[82],"used":[85],"as":[86,99],"set":[89,117],"protein":[92],"substrates":[93],"collected":[95],"from":[96],"literature":[98],"independent":[101,115],"test":[102,116],"set.":[103],"In":[104],"one-dimensional":[106],"convolutional":[107],"neural":[108],"network":[109],"model,":[110],"accuracy":[112],"was":[118],"highest,":[120],"at":[121],"0.832.":[122]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
