{"id":"https://openalex.org/W4388479647","doi":"https://doi.org/10.1145/3608164.3608194","title":"Hypothesis Generation from Literature for Advancing Biological Mechanism Research: A Perspective","display_name":"Hypothesis Generation from Literature for Advancing Biological Mechanism Research: A Perspective","publication_year":2023,"publication_date":"2023-05-26","ids":{"openalex":"https://openalex.org/W4388479647","doi":"https://doi.org/10.1145/3608164.3608194"},"language":"en","primary_location":{"id":"doi:10.1145/3608164.3608194","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3608164.3608194","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2023 15th International Conference on Bioinformatics and Biomedical Technology","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101548915","display_name":"W.H. Song","orcid":"https://orcid.org/0009-0000-1003-6646"},"institutions":[{"id":"https://openalex.org/I76569877","display_name":"Southeast University","ror":"https://ror.org/04ct4d772","country_code":"CN","type":"education","lineage":["https://openalex.org/I76569877"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Wenzheng Song","raw_affiliation_strings":["School of Biological Science and Medical Engineering, Southeast University, China"],"raw_orcid":"https://orcid.org/0009-0000-1003-6646","affiliations":[{"raw_affiliation_string":"School of Biological Science and Medical Engineering, Southeast University, China","institution_ids":["https://openalex.org/I76569877"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063021625","display_name":"Jianfei Sun","orcid":"https://orcid.org/0000-0003-2204-0479"},"institutions":[{"id":"https://openalex.org/I76569877","display_name":"Southeast University","ror":"https://ror.org/04ct4d772","country_code":"CN","type":"education","lineage":["https://openalex.org/I76569877"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianfei Sun","raw_affiliation_strings":["School of Biological Science and Medical Engineering, Southeast University, China"],"raw_orcid":"https://orcid.org/0000-0003-2204-0479","affiliations":[{"raw_affiliation_string":"School of Biological Science and Medical Engineering, Southeast University, China","institution_ids":["https://openalex.org/I76569877"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5101548915"],"corresponding_institution_ids":["https://openalex.org/I76569877"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.30959186,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"204","last_page":"209"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9918000102043152,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9675999879837036,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mechanism","display_name":"Mechanism (biology)","score":0.7036445140838623},{"id":"https://openalex.org/keywords/perspective","display_name":"Perspective (graphical)","score":0.6452987194061279},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.619788646697998},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5900497436523438},{"id":"https://openalex.org/keywords/pace","display_name":"Pace","score":0.5720222592353821},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5459477305412292},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.48987337946891785},{"id":"https://openalex.org/keywords/management-science","display_name":"Management science","score":0.37369638681411743},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.23342978954315186},{"id":"https://openalex.org/keywords/epistemology","display_name":"Epistemology","score":0.21141651272773743},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11420345306396484},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.09315049648284912}],"concepts":[{"id":"https://openalex.org/C89611455","wikidata":"https://www.wikidata.org/wiki/Q6804646","display_name":"Mechanism (biology)","level":2,"score":0.7036445140838623},{"id":"https://openalex.org/C12713177","wikidata":"https://www.wikidata.org/wiki/Q1900281","display_name":"Perspective (graphical)","level":2,"score":0.6452987194061279},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.619788646697998},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5900497436523438},{"id":"https://openalex.org/C2777526511","wikidata":"https://www.wikidata.org/wiki/Q691543","display_name":"Pace","level":2,"score":0.5720222592353821},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5459477305412292},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.48987337946891785},{"id":"https://openalex.org/C539667460","wikidata":"https://www.wikidata.org/wiki/Q2414942","display_name":"Management science","level":1,"score":0.37369638681411743},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.23342978954315186},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.21141651272773743},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11420345306396484},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.09315049648284912},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3608164.3608194","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3608164.3608194","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2023 15th International Conference on Bioinformatics and Biomedical Technology","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W2117446654","https://openalex.org/W2169099542","https://openalex.org/W2591456992","https://openalex.org/W2796571139","https://openalex.org/W2808925008","https://openalex.org/W2809189384","https://openalex.org/W2951538941","https://openalex.org/W3022196642","https://openalex.org/W3035483169","https://openalex.org/W3047395974","https://openalex.org/W3073354919","https://openalex.org/W3091130218","https://openalex.org/W3093194543","https://openalex.org/W3093787311","https://openalex.org/W3154159215","https://openalex.org/W4205577341","https://openalex.org/W4220851467","https://openalex.org/W4231510805","https://openalex.org/W4287646614","https://openalex.org/W6793675519"],"related_works":["https://openalex.org/W2386723501","https://openalex.org/W2387879414","https://openalex.org/W2390304029","https://openalex.org/W2354923724","https://openalex.org/W2146830340","https://openalex.org/W2377101853","https://openalex.org/W2362180844","https://openalex.org/W2105573916","https://openalex.org/W2378405797","https://openalex.org/W4288601434"],"abstract_inverted_index":{"The":[0],"number":[1],"of":[2,81,93,109,116],"biomedical":[3,48],"literature":[4,43],"being":[5],"published":[6],"has":[7],"experienced":[8],"significant":[9],"growth,":[10],"with":[11,21],"a":[12,36],"sharp":[13],"increase":[14],"in":[15,24,90,112],"recent":[16],"years.":[17],"However,":[18],"keeping":[19],"pace":[20],"new":[22],"knowledge":[23],"this":[25,74],"complex":[26],"and":[27,50,86,105],"specialized":[28],"field":[29],"can":[30],"be":[31],"challenging.":[32],"Hypothesis":[33],"Generation":[34],"is":[35],"literature-based":[37],"discovery":[38],"approach":[39],"that":[40],"utilizes":[41],"existing":[42,82],"to":[44,68,101],"automatically":[45],"generate":[46],"implicit":[47],"associations":[49],"provide":[51,78],"reasonable":[52],"predictions":[53],"for":[54],"future":[55],"research.":[56,96],"Despite":[57],"its":[58],"potential,":[59],"current":[60],"hypothesis":[61,83,110],"generation":[62,84,111],"methods":[63],"face":[64],"challenges":[65,104],"when":[66],"applied":[67],"research":[69],"on":[70],"biological":[71,94,117],"mechanisms.":[72,118],"In":[73],"perspective":[75],"paper,":[76],"we":[77],"an":[79],"overview":[80],"approaches,":[85],"examine":[87],"their":[88],"limitations":[89],"the":[91,107],"context":[92],"mechanism":[95],"We":[97],"propose":[98],"practical":[99],"solutions":[100],"overcome":[102],"these":[103],"highlight":[106],"potential":[108],"advancing":[113],"our":[114],"understanding":[115]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
