{"id":"https://openalex.org/W4398161323","doi":"https://doi.org/10.1145/3605098.3636071","title":"Fast Bipartite Forests for Semi-supervised Interaction Prediction","display_name":"Fast Bipartite Forests for Semi-supervised Interaction Prediction","publication_year":2024,"publication_date":"2024-04-08","ids":{"openalex":"https://openalex.org/W4398161323","doi":"https://doi.org/10.1145/3605098.3636071"},"language":"en","primary_location":{"id":"doi:10.1145/3605098.3636071","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3605098.3636071","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 39th ACM/SIGAPP Symposium on Applied Computing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5092105215","display_name":"Pedro Il\u00eddio","orcid":"https://orcid.org/0000-0002-5750-0204"},"institutions":[{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Pedro Il\u00eddio","raw_affiliation_strings":["Instituto de F\u00edsica de S\u00e3o Carlos, Universidade de S\u00e3o Paulo, S\u00e3o Carlos, S\u00e3o Paulo, Brazil"],"affiliations":[{"raw_affiliation_string":"Instituto de F\u00edsica de S\u00e3o Carlos, Universidade de S\u00e3o Paulo, S\u00e3o Carlos, S\u00e3o Paulo, Brazil","institution_ids":["https://openalex.org/I17974374"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015837199","display_name":"Andr\u00e9 Alves","orcid":"https://orcid.org/0000-0001-8869-1149"},"institutions":[{"id":"https://openalex.org/I177909021","display_name":"Universidade Federal de S\u00e3o Carlos","ror":"https://ror.org/00qdc6m37","country_code":"BR","type":"education","lineage":["https://openalex.org/I177909021"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Andr\u00e9 Alves","raw_affiliation_strings":["Departamento de Computa\u00e7\u00e3o, Universidade Fedral de S\u00e3o Carlos, S\u00e3o Carlos, S\u00e3o Paulo, Brazil"],"affiliations":[{"raw_affiliation_string":"Departamento de Computa\u00e7\u00e3o, Universidade Fedral de S\u00e3o Carlos, S\u00e3o Carlos, S\u00e3o Paulo, Brazil","institution_ids":["https://openalex.org/I177909021"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066866262","display_name":"Ricardo Cerri","orcid":"https://orcid.org/0000-0002-2582-1695"},"institutions":[{"id":"https://openalex.org/I177909021","display_name":"Universidade Federal de S\u00e3o Carlos","ror":"https://ror.org/00qdc6m37","country_code":"BR","type":"education","lineage":["https://openalex.org/I177909021"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Ricardo Cerri","raw_affiliation_strings":["Departamento de Computa\u00e7\u00e3o, Universidade Federal de S\u00e3o Carlos, S\u00e3o Carlos, S\u00e3o Paulo, Brazil"],"affiliations":[{"raw_affiliation_string":"Departamento de Computa\u00e7\u00e3o, Universidade Federal de S\u00e3o Carlos, S\u00e3o Carlos, S\u00e3o Paulo, Brazil","institution_ids":["https://openalex.org/I177909021"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5092105215"],"corresponding_institution_ids":["https://openalex.org/I17974374"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.06190678,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"979","last_page":"986"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11439","display_name":"Video Analysis and Summarization","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11439","display_name":"Video Analysis and Summarization","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10812","display_name":"Human Pose and Action Recognition","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11512","display_name":"Anomaly Detection Techniques and Applications","score":0.9837999939918518,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bipartite-graph","display_name":"Bipartite graph","score":0.7720783948898315},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6493404507637024},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.47188273072242737},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.40207821130752563},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.2470703423023224}],"concepts":[{"id":"https://openalex.org/C197657726","wikidata":"https://www.wikidata.org/wiki/Q174733","display_name":"Bipartite graph","level":3,"score":0.7720783948898315},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6493404507637024},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.47188273072242737},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.40207821130752563},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.2470703423023224},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/3605098.3636071","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3605098.3636071","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 39th ACM/SIGAPP Symposium on Applied Computing","raw_type":"proceedings-article"},{"id":"pmh:oai:lirias2repo.kuleuven.be:20.500.12942/757000","is_oa":false,"landing_page_url":"https://lirias.kuleuven.be/handle/20.500.12942/757000","pdf_url":null,"source":{"id":"https://openalex.org/S4306401954","display_name":"Lirias (KU Leuven)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I99464096","host_organization_name":"KU Leuven","host_organization_lineage":["https://openalex.org/I99464096"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"39th ACM/SIGAPP Symposium on Applied Computing, \u00c1vila, Spain, 8-12 April 2024","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/13","score":0.6700000166893005,"display_name":"Climate action"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W1867746808","https://openalex.org/W2035585923","https://openalex.org/W2106029302","https://openalex.org/W2109991441","https://openalex.org/W2139736926","https://openalex.org/W2153838454","https://openalex.org/W2154718035","https://openalex.org/W2161607603","https://openalex.org/W2171033594","https://openalex.org/W2256553158","https://openalex.org/W2517782820","https://openalex.org/W2603465745","https://openalex.org/W2605952223","https://openalex.org/W2766897790","https://openalex.org/W2785947426","https://openalex.org/W2800240915","https://openalex.org/W2889321024","https://openalex.org/W2912358215","https://openalex.org/W2967598666","https://openalex.org/W2991094260","https://openalex.org/W2997591727","https://openalex.org/W3000043291","https://openalex.org/W3011442134","https://openalex.org/W3018980093","https://openalex.org/W3109916301","https://openalex.org/W3150246531","https://openalex.org/W3210823552","https://openalex.org/W4200043367","https://openalex.org/W4379620274","https://openalex.org/W4380742954"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W3046775127","https://openalex.org/W3107602296","https://openalex.org/W4394896187","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W4364306694","https://openalex.org/W4312192474","https://openalex.org/W4283697347"],"abstract_inverted_index":{"Numerous":[0],"machine":[1,71],"learning":[2,72,134],"tasks":[3,34],"can":[4],"be":[5],"framed":[6],"as":[7,17],"the":[8,46,55,144,179],"prediction":[9,113,128],"of":[10,51,57,64,91,146,181],"interactions":[11],"in":[12,81,125,136,170,178],"a":[13,89,172],"bipartite":[14,103],"network,":[15],"such":[16,171],"relationships":[18],"between":[19],"proteins":[20],"and":[21,25,30,38,49,78,97,129,152],"drug":[22],"molecules,":[23],"genes":[24],"transcription":[26],"factors,":[27],"or":[28,54],"microRNAs":[29],"messenger":[31],"RNAs.":[32],"Such":[33],"present":[35],"unique":[36],"characteristics":[37],"challenges":[39],"often":[40],"overlooked":[41],"by":[42,88],"existing":[43,151],"strategies,":[44],"namely":[45],"high":[47],"dimensionality":[48],"sparsity":[50],"available":[52],"labels":[53],"infeasibility":[56],"validating":[58],"predictions":[59],"for":[60],"all":[61],"possible":[62],"pairs":[63],"entities.":[65],"In":[66],"this":[67],"study,":[68],"we":[69],"investigate":[70],"approaches":[73],"tailored":[74],"to":[75,85,120,130,166],"these":[76],"settings":[77],"propose":[79],"refinements":[80],"forest":[82],"algorithms":[83,124],"shown":[84,119,165],"improve":[86],"complexity":[87],"factor":[90],"log":[92],"n.":[93],"We":[94,141],"systematically":[95],"re-implement":[96],"compare":[98],"predecessor":[99],"strategies":[100],"on":[101,107],"ten":[102],"datasets,":[104],"shedding":[105],"light":[106],"their":[108],"performance":[109],"across":[110],"diverse":[111],"interaction":[112,127,182],"contexts.":[114],"Bipartite":[115],"decision":[116],"forests":[117,160],"were":[118],"overcome":[121],"several":[122],"traditional":[123],"binary":[126],"surpass":[131],"cutting-edge":[132],"deep":[133],"models":[135],"regressive":[137],"drug-protein":[138],"affinity":[139],"prediction.":[140,183],"also":[142],"assess":[143],"impact":[145],"missing":[147],"positive":[148],"interactions,":[149],"comparing":[150],"newly":[153],"proposed":[154,159],"tree-based":[155],"semi-supervised":[156,162],"approaches.":[157],"Our":[158],"employing":[161],"impurities":[163],"are":[164],"display":[167],"notable":[168],"resiliency":[169],"scenario,":[173],"an":[174],"especially":[175],"relevant":[176],"result":[177],"realm":[180]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
