{"id":"https://openalex.org/W4366083242","doi":"https://doi.org/10.1145/3592979.3593400","title":"Causal Discovery and Optimal Experimental Design for Genome-Scale Biological Network Recovery","display_name":"Causal Discovery and Optimal Experimental Design for Genome-Scale Biological Network Recovery","publication_year":2023,"publication_date":"2023-06-26","ids":{"openalex":"https://openalex.org/W4366083242","doi":"https://doi.org/10.1145/3592979.3593400","pmid":"https://pubmed.ncbi.nlm.nih.gov/37064526"},"language":"en","primary_location":{"id":"doi:10.1145/3592979.3593400","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3592979.3593400","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3592979.3593400","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Platform for Advanced Scientific Computing Conference","raw_type":"proceedings-article"},"type":"preprint","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://dl.acm.org/doi/pdf/10.1145/3592979.3593400","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101589258","display_name":"Ashka Shah","orcid":"https://orcid.org/0009-0007-6307-8154"},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]},{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ashka Shah","raw_affiliation_strings":["Argonne National Laboratory, Lemont, IL, USA","University of Chicago, Chicago, United States of America","University of Chicago, Chicago, United States of America Argonne National Laboratory, Lemont, IL, USA"],"affiliations":[{"raw_affiliation_string":"Argonne National Laboratory, Lemont, IL, USA","institution_ids":["https://openalex.org/I1282105669"]},{"raw_affiliation_string":"University of Chicago, Chicago, United States of America","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"University of Chicago, Chicago, United States of America Argonne National Laboratory, Lemont, IL, USA","institution_ids":["https://openalex.org/I1282105669","https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028188095","display_name":"Arvind Ramanathan","orcid":"https://orcid.org/0000-0002-1622-5488"},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]},{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]},{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Arvind Ramanathan","raw_affiliation_strings":["Argonne National Laboratory, Chicago, United States of America","University of Chicago, Chicago, IL, USA","Argonne National Laboratory, Chicago, United States of America University of Chicago, Chicago, IL, USA"],"affiliations":[{"raw_affiliation_string":"Argonne National Laboratory, Chicago, United States of America","institution_ids":["https://openalex.org/I1282105669"]},{"raw_affiliation_string":"University of Chicago, Chicago, IL, USA","institution_ids":["https://openalex.org/I40347166","https://openalex.org/I39422238"]},{"raw_affiliation_string":"Argonne National Laboratory, Chicago, United States of America University of Chicago, Chicago, IL, USA","institution_ids":["https://openalex.org/I1282105669","https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015720292","display_name":"Val\u00e9rie Hayot-Sasson","orcid":"https://orcid.org/0000-0002-4830-4535"},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]},{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Valerie Hayot-Sasson","raw_affiliation_strings":["Argonne National Laboratory, Chicago, United States of America","University of Chicago, Chicago, United States of America","University of Chicago, Chicago, United States of America Argonne National Laboratory, Chicago, United States of America"],"affiliations":[{"raw_affiliation_string":"Argonne National Laboratory, Chicago, United States of America","institution_ids":["https://openalex.org/I1282105669"]},{"raw_affiliation_string":"University of Chicago, Chicago, United States of America","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"University of Chicago, Chicago, United States of America Argonne National Laboratory, Chicago, United States of America","institution_ids":["https://openalex.org/I1282105669","https://openalex.org/I40347166"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053682943","display_name":"Rick Stevens","orcid":"https://orcid.org/0000-0002-4268-4020"},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]},{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rick Stevens","raw_affiliation_strings":["Argonne National Laboratory, Chicago, United States of America","University of Chicago, Chicago, United States of America","University of Chicago, Chicago, United States of America Argonne National Laboratory, Chicago, United States of America"],"affiliations":[{"raw_affiliation_string":"Argonne National Laboratory, Chicago, United States of America","institution_ids":["https://openalex.org/I1282105669"]},{"raw_affiliation_string":"University of Chicago, Chicago, United States of America","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"University of Chicago, Chicago, United States of America Argonne National Laboratory, Chicago, United States of America","institution_ids":["https://openalex.org/I1282105669","https://openalex.org/I40347166"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5101589258"],"corresponding_institution_ids":["https://openalex.org/I1282105669","https://openalex.org/I40347166"],"apc_list":null,"apc_paid":null,"fwci":0.3031,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.62387911,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"11"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9932000041007996,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9919999837875366,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.7346395254135132},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6571758389472961},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5672845244407654},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.5618652105331421},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.5490508675575256},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4732551872730255},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.43900761008262634},{"id":"https://openalex.org/keywords/speedup","display_name":"Speedup","score":0.4381953477859497},{"id":"https://openalex.org/keywords/observational-study","display_name":"Observational study","score":0.4305087924003601},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.42592746019363403},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3311624228954315},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3310874104499817},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3273511528968811},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.32192322611808777},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.210414320230484},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17557311058044434},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.12230762839317322},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09016430377960205},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.08836975693702698}],"concepts":[{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.7346395254135132},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6571758389472961},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5672845244407654},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.5618652105331421},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.5490508675575256},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4732551872730255},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.43900761008262634},{"id":"https://openalex.org/C68339613","wikidata":"https://www.wikidata.org/wiki/Q1549489","display_name":"Speedup","level":2,"score":0.4381953477859497},{"id":"https://openalex.org/C23131810","wikidata":"https://www.wikidata.org/wiki/Q818574","display_name":"Observational study","level":2,"score":0.4305087924003601},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.42592746019363403},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3311624228954315},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3310874104499817},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3273511528968811},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.32192322611808777},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.210414320230484},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17557311058044434},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.12230762839317322},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09016430377960205},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.08836975693702698},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1145/3592979.3593400","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3592979.3593400","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3592979.3593400","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Platform for Advanced Scientific Computing Conference","raw_type":"proceedings-article"},{"id":"pmid:37064526","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37064526","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ArXiv","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10104184","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10104184","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10104184/pdf/nihpp-2304.03210v1.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ArXiv","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1145/3592979.3593400","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3592979.3593400","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3592979.3593400","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Platform for Advanced Scientific Computing Conference","raw_type":"proceedings-article"},"sustainable_development_goals":[{"score":0.6200000047683716,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G1015216249","display_name":null,"funder_award_id":"DE-AC02-06CH1135","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1065316766","display_name":null,"funder_award_id":"Award","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1116540683","display_name":null,"funder_award_id":"DE-AC02-06CH11","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G1313983767","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320338284","funder_display_name":"Argonne National Laboratory"},{"id":"https://openalex.org/G1319584452","display_name":null,"funder_award_id":"Exascale Computing Project (17-SC-20-SC)","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1751644051","display_name":null,"funder_award_id":"DE-AC02-06CH11357","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G1814993963","display_name":null,"funder_award_id":"75N93019C00076","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G1844751952","display_name":null,"funder_award_id":"DE-AC02_06CH11357","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G2754454295","display_name":null,"funder_award_id":"DE-AC02-06CH11357.","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G2777053550","display_name":null,"funder_award_id":"AC02-06CH11357","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G3000213308","display_name":null,"funder_award_id":"DE-AC02-06CH113","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G3075337988","display_name":null,"funder_award_id":"06CH11357","funder_id":"https://openalex.org/F4320338284","funder_display_name":"Argonne National Laboratory"},{"id":"https://openalex.org/G3207208351","display_name":null,"funder_award_id":"75N93019C00076","funder_id":"https://openalex.org/F4320306085","funder_display_name":"U.S. Department of Health and Human Services"},{"id":"https://openalex.org/G3232922872","display_name":null,"funder_award_id":"17-SC-20-SC","funder_id":"https://openalex.org/F4320332369","funder_display_name":"National Nuclear Security Administration"},{"id":"https://openalex.org/G3311144436","display_name":null,"funder_award_id":"DE-AC02-06CH11357","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G3318903820","display_name":null,"funder_award_id":"DE-AC02-06CH11357","funder_id":"https://openalex.org/F4320332369","funder_display_name":"National Nuclear Security Administration"},{"id":"https://openalex.org/G3698770707","display_name":null,"funder_award_id":"P01AI165077","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G3801222974","display_name":null,"funder_award_id":"DE-AC02-06CH1135","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4030212589","display_name":null,"funder_award_id":"contract DE-AC02-06CH11357","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G4145457401","display_name":null,"funder_award_id":"DE-AC02-06CH113","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G4500234132","display_name":null,"funder_award_id":"P01AI165077","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4877169874","display_name":null,"funder_award_id":"DE-AC02-06CH11357.","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G498139845","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G5001603810","display_name":null,"funder_award_id":"17-SC-20-S","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G5085543421","display_name":null,"funder_award_id":"AC02-06CH11357","funder_id":"https://openalex.org/F4320338284","funder_display_name":"Argonne National Laboratory"},{"id":"https://openalex.org/G5350930532","display_name":null,"funder_award_id":"75N93019C0007","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G6085113958","display_name":null,"funder_award_id":"E-AC02-06CH11357","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6345853531","display_name":null,"funder_award_id":"unknown","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G650626725","display_name":null,"funder_award_id":"E-AC02-06CH11357","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G6516752315","display_name":null,"funder_award_id":"DE-AC02-06CH11357.","funder_id":"https://openalex.org/F4320338284","funder_display_name":"Argonne National Laboratory"},{"id":"https://openalex.org/G6558272803","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6675888928","display_name":null,"funder_award_id":"75N93019C00076","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6699942780","display_name":null,"funder_award_id":"DE-AC02-06CH11357","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6848031779","display_name":null,"funder_award_id":"06CH11357","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6859237865","display_name":null,"funder_award_id":"17-SC-20-SC","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6918803902","display_name":null,"funder_award_id":"06CH11357","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G7230044214","display_name":null,"funder_award_id":"DE-AC02-06CH1135","funder_id":"https://openalex.org/F4320338284","funder_display_name":"Argonne National Laboratory"},{"id":"https://openalex.org/G7822115964","display_name":null,"funder_award_id":"under contract DE-AC02-06CH11357","funder_id":"https://openalex.org/F4320338284","funder_display_name":"Argonne National Laboratory"},{"id":"https://openalex.org/G7954425250","display_name":null,"funder_award_id":"DE-AC02-06CH11357","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8143874970","display_name":null,"funder_award_id":"AC02-06CH11357","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G8234470690","display_name":null,"funder_award_id":"17-SC-20-SC","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8253304997","display_name":null,"funder_award_id":"17-SC-20-SC","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G8314672274","display_name":null,"funder_award_id":"DE-AC02-06CH11","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8414908677","display_name":null,"funder_award_id":"DE-AC0","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8681167732","display_name":null,"funder_award_id":"Exascale Computing Project (17-SC-20-SC)","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G969889393","display_name":null,"funder_award_id":"DE-AC02-","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320306085","display_name":"U.S. Department of Health and Human Services","ror":"https://ror.org/033jnv181"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"},{"id":"https://openalex.org/F4320332369","display_name":"National Nuclear Security Administration","ror":"https://ror.org/03sk1we31"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"},{"id":"https://openalex.org/F4320337509","display_name":"Biological and Environmental Research","ror":"https://ror.org/0114b2m14"},{"id":"https://openalex.org/F4320338284","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4366083242.pdf","grobid_xml":"https://content.openalex.org/works/W4366083242.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W1511986666","https://openalex.org/W2067931273","https://openalex.org/W2082382448","https://openalex.org/W2100716078","https://openalex.org/W2111061246","https://openalex.org/W2134469465","https://openalex.org/W2162690533","https://openalex.org/W2275580678","https://openalex.org/W2342019990","https://openalex.org/W2396961413","https://openalex.org/W2485657344","https://openalex.org/W2606043510","https://openalex.org/W2963174822","https://openalex.org/W2972244073","https://openalex.org/W3003611953","https://openalex.org/W3143219376","https://openalex.org/W4235136727","https://openalex.org/W4256361765","https://openalex.org/W4302423442"],"related_works":["https://openalex.org/W2158714033","https://openalex.org/W78967844","https://openalex.org/W3213185671","https://openalex.org/W4386628104","https://openalex.org/W4206945140","https://openalex.org/W2509687359","https://openalex.org/W4212865750","https://openalex.org/W2362023034","https://openalex.org/W2063941210","https://openalex.org/W2598362101"],"abstract_inverted_index":{"Causal":[0,25],"discovery":[1,146],"of":[2,53,61,96],"genome-scale":[3],"networks":[4,108],"is":[5,111,138],"important":[6,140],"for":[7,87,128],"identifying":[8],"pathways":[9],"from":[10,73],"genes":[11],"to":[12,35,48,105,132],"observable":[13],"traits":[14],"-e.g.":[15],"differences":[16],"in":[17,38,143],"cell":[18],"function,":[19],"disease,":[20],"drug":[21],"resistance":[22],"and":[23,75,78,102],"others.":[24],"learners":[26],"based":[27],"on":[28,32,58,98,134],"graphical":[29],"models":[30,43],"rely":[31],"interventional":[33,74,130],"samples":[34],"orient":[36],"edges":[37],"the":[39,51,54,59,135],"network.":[40],"However,":[41],"these":[42],"have":[44],"not":[45],"been":[46],"shown":[47],"scale":[49,148],"up":[50,104],"size":[52],"genome,":[55],"which":[56],"are":[57],"order":[60],"10<sup>3</sup>-10<sup>4</sup>":[62],"genes.":[63],"We":[64,117],"introduce":[65],"a":[66],"new":[67],"learner,":[68],"SP-GIES,":[69],"that":[70],"jointly":[71],"learns":[72],"observational":[76],"datasets":[77],"achieves":[79,92],"almost":[80],"4x":[81,112],"speedup":[82],"against":[83],"an":[84,93,139],"existing":[85,115],"learner":[86],"1,000":[88,99],"node":[89,100,107],"networks.":[90],"SP-GIES":[91,121],"AUC-PR":[94],"score":[95],"0.91":[97],"networks,":[101],"scales":[103],"2,000":[106],"-":[109],"this":[110],"larger":[113],"than":[114],"works.":[116],"also":[118],"show":[119],"how":[120],"improves":[122],"downstream":[123],"optimal":[124],"experimental":[125,151],"design":[126],"strategies":[127],"selecting":[129],"experiments":[131],"perform":[133],"system.":[136],"This":[137],"step":[141],"forward":[142],"realizing":[144],"causal":[145],"at":[147],"via":[149],"autonomous":[150],"design.":[152]},"counts_by_year":[{"year":2025,"cited_by_count":2}],"updated_date":"2026-04-15T08:11:43.952461","created_date":"2025-10-10T00:00:00"}
