{"id":"https://openalex.org/W4387846245","doi":"https://doi.org/10.1145/3583780.3615128","title":"PGB: A PubMed Graph Benchmark for Heterogeneous Network Representation Learning","display_name":"PGB: A PubMed Graph Benchmark for Heterogeneous Network Representation Learning","publication_year":2023,"publication_date":"2023-10-21","ids":{"openalex":"https://openalex.org/W4387846245","doi":"https://doi.org/10.1145/3583780.3615128"},"language":"en","primary_location":{"id":"doi:10.1145/3583780.3615128","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3583780.3615128","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 32nd ACM International Conference on Information and Knowledge Management","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004304087","display_name":"Eric W. Lee","orcid":"https://orcid.org/0000-0002-3839-2826"},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Eric W. Lee","raw_affiliation_strings":["Emory University, Atlanta, GA, USA"],"affiliations":[{"raw_affiliation_string":"Emory University, Atlanta, GA, USA","institution_ids":["https://openalex.org/I150468666"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022272635","display_name":"Joyce C. Ho","orcid":"https://orcid.org/0000-0001-9168-3916"},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joyce C. Ho","raw_affiliation_strings":["Emory University, Atlanta, GA, USA"],"affiliations":[{"raw_affiliation_string":"Emory University, Atlanta, GA, USA","institution_ids":["https://openalex.org/I150468666"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5004304087"],"corresponding_institution_ids":["https://openalex.org/I150468666"],"apc_list":null,"apc_paid":null,"fwci":0.1523,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.5981041,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"5331","last_page":"5335"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8098865747451782},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.6842372417449951},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.6421084403991699},{"id":"https://openalex.org/keywords/popularity","display_name":"Popularity","score":0.6371555924415588},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.597025454044342},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4751957654953003},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.38165026903152466},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3607723116874695},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.30623966455459595},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.21355411410331726}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8098865747451782},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.6842372417449951},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.6421084403991699},{"id":"https://openalex.org/C2780586970","wikidata":"https://www.wikidata.org/wiki/Q1357284","display_name":"Popularity","level":2,"score":0.6371555924415588},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.597025454044342},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4751957654953003},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.38165026903152466},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3607723116874695},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.30623966455459595},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.21355411410331726},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0},{"id":"https://openalex.org/C77805123","wikidata":"https://www.wikidata.org/wiki/Q161272","display_name":"Social psychology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3583780.3615128","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3583780.3615128","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 32nd ACM International Conference on Information and Knowledge Management","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6299999952316284,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G2477648378","display_name":null,"funder_award_id":"IIS-2145411","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3494058236","display_name":"CAREER: Aequitas: A comprehensive machine learning framework to decode health disparities","funder_award_id":"2145411","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W1501856433","https://openalex.org/W1888005072","https://openalex.org/W2025672729","https://openalex.org/W2099883114","https://openalex.org/W2124542805","https://openalex.org/W2163834848","https://openalex.org/W2332282745","https://openalex.org/W2397182203","https://openalex.org/W2593758073","https://openalex.org/W2605234117","https://openalex.org/W2612431485","https://openalex.org/W2801930304","https://openalex.org/W2913936659","https://openalex.org/W2970771982","https://openalex.org/W2997897037","https://openalex.org/W3007813770","https://openalex.org/W3011085233","https://openalex.org/W3015453090","https://openalex.org/W3035324702","https://openalex.org/W3082891099","https://openalex.org/W3122089757","https://openalex.org/W3151791879","https://openalex.org/W4382139355"],"related_works":["https://openalex.org/W2368605798","https://openalex.org/W2518037665","https://openalex.org/W2348524959","https://openalex.org/W2477036161","https://openalex.org/W2368049389","https://openalex.org/W2384861574","https://openalex.org/W4294565801","https://openalex.org/W2170801710","https://openalex.org/W2952704802","https://openalex.org/W2741781807"],"abstract_inverted_index":{"There":[0],"has":[1],"been":[2],"rapid":[3],"growth":[4],"in":[5,37],"biomedical":[6,42],"literature,":[7],"yet":[8],"capturing":[9],"the":[10,13,34,38,69,77,90],"heterogeneity":[11],"of":[12,16,68,100],"bibliographic":[14],"information":[15,35],"these":[17],"articles":[18],"remains":[19],"relatively":[20],"understudied.":[21],"Graph":[22,53],"neural":[23],"networks":[24,72],"have":[25],"gained":[26],"popularity,":[27],"however,":[28],"they":[29],"may":[30],"not":[31],"fully":[32],"capture":[33],"available":[36],"PubMed":[39,52],"database,":[40],"a":[41,56,81],"literature":[43],"repository":[44],"containing":[45],"over":[46],"33":[47],"million":[48],"articles.":[49],"We":[50],"introduce":[51],"Benchmark":[54],"(PGB),":[55],"new":[57],"benchmark":[58,95],"dataset":[59],"for":[60],"evaluating":[61],"heterogeneous":[62,71],"graph":[63],"representations.":[64],"PGB":[65],"is":[66],"one":[67],"largest":[70],"to":[73],"date":[74],"and":[75,89],"aggregates":[76],"rich":[78],"metadata":[79],"into":[80],"unified":[82],"source":[83],"including":[84],"abstract,":[85],"authors,":[86],"citations,":[87],"keywords,":[88],"associated":[91],"keyword":[92],"hierarchy.":[93],"The":[94],"contains":[96],"an":[97,105],"evaluation":[98],"task":[99],"21":[101],"systematic":[102],"review":[103],"topics,":[104],"essential":[106],"knowledge":[107],"translation":[108],"tool.":[109]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
