{"id":"https://openalex.org/W4321446074","doi":"https://doi.org/10.1145/3572848.3577480","title":"High-Performance and Scalable Agent-Based Simulation with BioDynaMo","display_name":"High-Performance and Scalable Agent-Based Simulation with BioDynaMo","publication_year":2023,"publication_date":"2023-02-21","ids":{"openalex":"https://openalex.org/W4321446074","doi":"https://doi.org/10.1145/3572848.3577480"},"language":"en","primary_location":{"id":"doi:10.1145/3572848.3577480","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3572848.3577480","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 28th ACM SIGPLAN Annual Symposium on Principles and Practice of Parallel Programming","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1145/3572848.3577480","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038201375","display_name":"Lukas Breitwieser","orcid":"https://orcid.org/0000-0003-2265-8615"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I67311998","display_name":"European Organization for Nuclear Research","ror":"https://ror.org/01ggx4157","country_code":"CH","type":"facility","lineage":["https://openalex.org/I67311998"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Lukas Breitwieser","raw_affiliation_strings":["CERN, Switzerland and ETH Zurich, Switzerland"],"raw_orcid":"https://orcid.org/0000-0003-2265-8615","affiliations":[{"raw_affiliation_string":"CERN, Switzerland and ETH Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088","https://openalex.org/I67311998"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035102250","display_name":"Ahmad Hesam","orcid":"https://orcid.org/0000-0001-7331-1000"},"institutions":[{"id":"https://openalex.org/I98358874","display_name":"Delft University of Technology","ror":"https://ror.org/02e2c7k09","country_code":"NL","type":"education","lineage":["https://openalex.org/I98358874"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Ahmad Hesam","raw_affiliation_strings":["Delft University of Technology, The Netherlands"],"raw_orcid":"https://orcid.org/0000-0001-7331-1000","affiliations":[{"raw_affiliation_string":"Delft University of Technology, The Netherlands","institution_ids":["https://openalex.org/I98358874"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073843631","display_name":"Fons Rademakers","orcid":"https://orcid.org/0000-0002-3571-9635"},"institutions":[{"id":"https://openalex.org/I67311998","display_name":"European Organization for Nuclear Research","ror":"https://ror.org/01ggx4157","country_code":"CH","type":"facility","lineage":["https://openalex.org/I67311998"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Fons Rademakers","raw_affiliation_strings":["CERN, Switzerland"],"raw_orcid":"https://orcid.org/0000-0002-3571-9635","affiliations":[{"raw_affiliation_string":"CERN, Switzerland","institution_ids":["https://openalex.org/I67311998"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044416322","display_name":"Juan G\u00f3mez-Luna","orcid":"https://orcid.org/0000-0002-6514-1571"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Juan G\u00f3mez Luna","raw_affiliation_strings":["ETH Zurich, Switzerland"],"raw_orcid":"https://orcid.org/0000-0002-6514-1571","affiliations":[{"raw_affiliation_string":"ETH Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5050695684","display_name":"Onur Mutlu","orcid":"https://orcid.org/0000-0002-0075-2312"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Onur Mutlu","raw_affiliation_strings":["ETH Zurich, Switzerland"],"raw_orcid":"https://orcid.org/0000-0002-0075-2312","affiliations":[{"raw_affiliation_string":"ETH Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"174","last_page":"188"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11195","display_name":"Simulation Techniques and Applications","score":0.9905999898910522,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11195","display_name":"Simulation Techniques and Applications","score":0.9905999898910522,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.984000027179718,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9815000295639038,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7693668603897095},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6922670602798462},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.43721210956573486},{"id":"https://openalex.org/keywords/computer-architecture","display_name":"Computer architecture","score":0.42280879616737366},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.17168888449668884}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7693668603897095},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6922670602798462},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.43721210956573486},{"id":"https://openalex.org/C118524514","wikidata":"https://www.wikidata.org/wiki/Q173212","display_name":"Computer architecture","level":1,"score":0.42280879616737366},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.17168888449668884}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1145/3572848.3577480","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3572848.3577480","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 28th ACM SIGPLAN Annual Symposium on Principles and Practice of Parallel Programming","raw_type":"proceedings-article"},{"id":"pmh:oai:cds.cern.ch:2955320","is_oa":true,"landing_page_url":"http://cds.cern.ch/record/2955320","pdf_url":"https://cds.cern.ch/record/2955320/files/document.pdf","source":{"id":"https://openalex.org/S4306402195","display_name":"CERN Document Server (European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:tudelft.nl:uuid:8c6308eb-3817-4260-a590-e8dd10a853ed","is_oa":true,"landing_page_url":"http://resolver.tudelft.nl/uuid:8c6308eb-3817-4260-a590-e8dd10a853ed","pdf_url":"http://resolver.tudelft.nl/uuid:8c6308eb-3817-4260-a590-e8dd10a853ed","source":{"id":"https://openalex.org/S4306400906","display_name":"Research Repository (Delft University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I98358874","host_organization_name":"Delft University of Technology","host_organization_lineage":["https://openalex.org/I98358874"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"conference paper"}],"best_oa_location":{"id":"doi:10.1145/3572848.3577480","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3572848.3577480","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 28th ACM SIGPLAN Annual Symposium on Principles and Practice of Parallel Programming","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320313559","display_name":"CERN","ror":"https://ror.org/01ggx4157"},{"id":"https://openalex.org/F4320316785","display_name":"VMware","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":59,"referenced_works":["https://openalex.org/W115452890","https://openalex.org/W1522372289","https://openalex.org/W1572346965","https://openalex.org/W1893942944","https://openalex.org/W1966816982","https://openalex.org/W1967961367","https://openalex.org/W1968426044","https://openalex.org/W1996658960","https://openalex.org/W2010715214","https://openalex.org/W2036011992","https://openalex.org/W2052022130","https://openalex.org/W2072605585","https://openalex.org/W2078391824","https://openalex.org/W2086112773","https://openalex.org/W2100345558","https://openalex.org/W2102667107","https://openalex.org/W2103821666","https://openalex.org/W2112682311","https://openalex.org/W2112745564","https://openalex.org/W2117899937","https://openalex.org/W2124535624","https://openalex.org/W2124677924","https://openalex.org/W2134224856","https://openalex.org/W2143462372","https://openalex.org/W2144244247","https://openalex.org/W2147270524","https://openalex.org/W2150871235","https://openalex.org/W2150981663","https://openalex.org/W2152803686","https://openalex.org/W2153373747","https://openalex.org/W2157999920","https://openalex.org/W2160135160","https://openalex.org/W2161575244","https://openalex.org/W2171895829","https://openalex.org/W2172154528","https://openalex.org/W2272546316","https://openalex.org/W2333320732","https://openalex.org/W2504129755","https://openalex.org/W2507876642","https://openalex.org/W2543459117","https://openalex.org/W2582743722","https://openalex.org/W2623066589","https://openalex.org/W2721204918","https://openalex.org/W2730541762","https://openalex.org/W2733239919","https://openalex.org/W2810476603","https://openalex.org/W2900986793","https://openalex.org/W2911948847","https://openalex.org/W2921796727","https://openalex.org/W2949797623","https://openalex.org/W3121364520","https://openalex.org/W3157114164","https://openalex.org/W3199089929","https://openalex.org/W3201073812","https://openalex.org/W4230781998","https://openalex.org/W4246962530","https://openalex.org/W4252485478","https://openalex.org/W4285121610","https://openalex.org/W6926358327"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W1982914007","https://openalex.org/W2159583675","https://openalex.org/W1824242903","https://openalex.org/W1493858311","https://openalex.org/W2155470929","https://openalex.org/W2111125783","https://openalex.org/W2394465510"],"abstract_inverted_index":{"Agent-based":[0],"modeling":[1],"plays":[2],"an":[3],"essential":[4],"role":[5],"in":[6],"gaining":[7],"insights":[8],"into":[9],"biology,":[10],"sociology,":[11],"economics,":[12],"and":[13],"other":[14],"fields.":[15],"However,":[16],"many":[17],"existing":[18],"agent-based":[19],"simulation":[20,36,47],"platforms":[21],"are":[22],"not":[23],"suitable":[24],"for":[25],"large-scale":[26],"studies":[27],"due":[28],"to":[29],"the":[30,34],"low":[31],"performance":[32],"of":[33],"underlying":[35],"engines.":[37],"To":[38],"overcome":[39],"this":[40],"limitation,":[41],"we":[42],"present":[43],"a":[44],"novel":[45],"high-performance":[46],"engine.":[48]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":1}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
