{"id":"https://openalex.org/W4381611981","doi":"https://doi.org/10.1145/3571723","title":"Theoretical Analysis of Sequencing Bioinformatics Algorithms and Beyond","display_name":"Theoretical Analysis of Sequencing Bioinformatics Algorithms and Beyond","publication_year":2023,"publication_date":"2023-06-22","ids":{"openalex":"https://openalex.org/W4381611981","doi":"https://doi.org/10.1145/3571723","pmid":"https://pubmed.ncbi.nlm.nih.gov/38736702"},"language":"en","primary_location":{"id":"doi:10.1145/3571723","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3571723","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3571723","source":{"id":"https://openalex.org/S103482838","display_name":"Communications of the ACM","issn_l":"0001-0782","issn":["0001-0782","1557-7317"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Communications of the ACM","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://dl.acm.org/doi/pdf/10.1145/3571723","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066909672","display_name":"Paul Medvedev","orcid":"https://orcid.org/0000-0003-3143-594X"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Paul Medvedev","raw_affiliation_strings":["Pennsylvania State University, University Park, PA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pennsylvania State University, University Park, PA, USA","institution_ids":["https://openalex.org/I130769515"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5066909672"],"corresponding_institution_ids":["https://openalex.org/I130769515"],"apc_list":null,"apc_paid":null,"fwci":0.5538,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.61113284,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"66","issue":"7","first_page":"118","last_page":"125"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.989300012588501,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6123085021972656},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5122970342636108},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.397402286529541},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3578168749809265},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3406633734703064},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2358989417552948}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6123085021972656},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5122970342636108},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.397402286529541},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3578168749809265},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3406633734703064},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2358989417552948}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1145/3571723","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3571723","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3571723","source":{"id":"https://openalex.org/S103482838","display_name":"Communications of the ACM","issn_l":"0001-0782","issn":["0001-0782","1557-7317"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Communications of the ACM","raw_type":"journal-article"},{"id":"pmid:38736702","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38736702","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Communications of the ACM","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11087067","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11087067","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11087067/pdf/nihms-1985092.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nd","license_id":"https://openalex.org/licenses/cc-by-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Commun ACM","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1145/3571723","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3571723","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3571723","source":{"id":"https://openalex.org/S103482838","display_name":"Communications of the ACM","issn_l":"0001-0782","issn":["0001-0782","1557-7317"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Communications of the ACM","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","score":0.5099999904632568,"display_name":"Zero hunger"}],"awards":[{"id":"https://openalex.org/G174627229","display_name":"Frameworks: Re-Engineering Galaxy for Performance, Scalability and Energy Efficiency","funder_award_id":"1931531","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G318861138","display_name":"Leveraging k-mer sketching statistics to enhance metagenomic methods and alignment algorithms","funder_award_id":"5r01gm146462-02","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G347575844","display_name":null,"funder_award_id":"R01 GM146462","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G4106800444","display_name":"CAREER: De Novo Assembly of Large Genomic Data","funder_award_id":"1453527","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6636646442","display_name":"A k-mer-based search engine for sequencing databases","funder_award_id":"2138585","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4381611981.pdf"},"referenced_works_count":50,"referenced_works":["https://openalex.org/W1966551053","https://openalex.org/W1970939265","https://openalex.org/W1973067702","https://openalex.org/W2033083661","https://openalex.org/W2035596374","https://openalex.org/W2046601740","https://openalex.org/W2078331392","https://openalex.org/W2098029862","https://openalex.org/W2098531465","https://openalex.org/W2102532874","https://openalex.org/W2104775949","https://openalex.org/W2105656684","https://openalex.org/W2106399600","https://openalex.org/W2107830007","https://openalex.org/W2108640362","https://openalex.org/W2111829451","https://openalex.org/W2112749286","https://openalex.org/W2120902911","https://openalex.org/W2148048486","https://openalex.org/W2151674273","https://openalex.org/W2152556446","https://openalex.org/W2159428741","https://openalex.org/W2161048357","https://openalex.org/W2165847428","https://openalex.org/W2170551349","https://openalex.org/W2303656007","https://openalex.org/W2312323279","https://openalex.org/W2344013120","https://openalex.org/W2535388830","https://openalex.org/W2569156823","https://openalex.org/W2592811885","https://openalex.org/W2613660619","https://openalex.org/W2759261668","https://openalex.org/W2795686629","https://openalex.org/W2810848326","https://openalex.org/W2905576637","https://openalex.org/W2948024819","https://openalex.org/W2963186762","https://openalex.org/W2990344913","https://openalex.org/W3018162653","https://openalex.org/W3085758516","https://openalex.org/W3100935868","https://openalex.org/W3113074526","https://openalex.org/W3134677442","https://openalex.org/W3159728495","https://openalex.org/W3167621737","https://openalex.org/W3216588755","https://openalex.org/W4226118718","https://openalex.org/W4247794781","https://openalex.org/W6753180013"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2051487156","https://openalex.org/W2073681303","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"A":[0],"case":[1],"study":[2],"reveals":[3],"the":[4],"theoretical":[5],"analysis":[6],"of":[7],"algorithms":[8],"is":[9],"not":[10],"always":[11],"as":[12,14],"helpful":[13],"standard":[15],"dogma":[16],"might":[17],"suggest.":[18]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1}],"updated_date":"2026-08-06T08:24:18.245995","created_date":"2025-10-10T00:00:00"}
