{"id":"https://openalex.org/W4319309790","doi":"https://doi.org/10.1145/3571532.3571540","title":"Predicting Microbe-Disease Associations via Multiple Layer Graph Convolutional Network and Attention Mechanism","display_name":"Predicting Microbe-Disease Associations via Multiple Layer Graph Convolutional Network and Attention Mechanism","publication_year":2022,"publication_date":"2022-10-28","ids":{"openalex":"https://openalex.org/W4319309790","doi":"https://doi.org/10.1145/3571532.3571540"},"language":"en","primary_location":{"id":"doi:10.1145/3571532.3571540","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3571532.3571540","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3571532.3571540","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2022 11th International Conference on Bioinformatics and Biomedical Science","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://dl.acm.org/doi/pdf/10.1145/3571532.3571540","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020869417","display_name":"Kai Shi","orcid":"https://orcid.org/0000-0003-0038-625X"},"institutions":[{"id":"https://openalex.org/I38706770","display_name":"Guilin University of Technology","ror":"https://ror.org/03z391397","country_code":"CN","type":"education","lineage":["https://openalex.org/I38706770"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kai Shi","raw_affiliation_strings":["College of Information Science and Engineering, Guilin University of Technology, China and Guangxi Key Laboratory of Embedded Technology and Intelligent System, Guilin University of Technology, China"],"raw_orcid":"https://orcid.org/0000-0003-0038-625X","affiliations":[{"raw_affiliation_string":"College of Information Science and Engineering, Guilin University of Technology, China and Guangxi Key Laboratory of Embedded Technology and Intelligent System, Guilin University of Technology, China","institution_ids":["https://openalex.org/I38706770"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079245565","display_name":"Lin Li","orcid":"https://orcid.org/0000-0001-6934-4504"},"institutions":[{"id":"https://openalex.org/I38706770","display_name":"Guilin University of Technology","ror":"https://ror.org/03z391397","country_code":"CN","type":"education","lineage":["https://openalex.org/I38706770"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lin Li","raw_affiliation_strings":["College of Information Science and Engineering, Guilin University of Technology, China"],"raw_orcid":"https://orcid.org/0000-0001-6934-4504","affiliations":[{"raw_affiliation_string":"College of Information Science and Engineering, Guilin University of Technology, China","institution_ids":["https://openalex.org/I38706770"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102816962","display_name":"Juehua Yu","orcid":"https://orcid.org/0000-0002-1661-0503"},"institutions":[{"id":"https://openalex.org/I26080491","display_name":"Kunming Medical University","ror":"https://ror.org/038c3w259","country_code":"CN","type":"education","lineage":["https://openalex.org/I26080491"]},{"id":"https://openalex.org/I4210120169","display_name":"First Affiliated Hospital of Kunming Medical University","ror":"https://ror.org/02g01ht84","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210120169"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Juehua Yu","raw_affiliation_strings":["The First Affiliated Hospital of Kunming Medical University, China"],"raw_orcid":"https://orcid.org/0000-0002-1661-0503","affiliations":[{"raw_affiliation_string":"The First Affiliated Hospital of Kunming Medical University, China","institution_ids":["https://openalex.org/I26080491","https://openalex.org/I4210120169"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073838165","display_name":"Yi Zhang","orcid":"https://orcid.org/0000-0001-6167-7945"},"institutions":[{"id":"https://openalex.org/I38706770","display_name":"Guilin University of Technology","ror":"https://ror.org/03z391397","country_code":"CN","type":"education","lineage":["https://openalex.org/I38706770"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yi Zhang","raw_affiliation_strings":["College of Information Science and Engineering, Guilin University of Technolog, China"],"raw_orcid":"https://orcid.org/0000-0001-6167-7945","affiliations":[{"raw_affiliation_string":"College of Information Science and Engineering, Guilin University of Technolog, China","institution_ids":["https://openalex.org/I38706770"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101699482","display_name":"Xiaolan Xie","orcid":"https://orcid.org/0000-0001-9546-5115"},"institutions":[{"id":"https://openalex.org/I38706770","display_name":"Guilin University of Technology","ror":"https://ror.org/03z391397","country_code":"CN","type":"education","lineage":["https://openalex.org/I38706770"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaolan Xie","raw_affiliation_strings":["College of Information Science and Engineering, Guilin University of Technology, China"],"raw_orcid":"https://orcid.org/0000-0001-9546-5115","affiliations":[{"raw_affiliation_string":"College of Information Science and Engineering, Guilin University of Technology, China","institution_ids":["https://openalex.org/I38706770"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.0611,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.83528473,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"59","last_page":"65"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9693999886512756,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10257","display_name":"Oral microbiology and periodontitis research","score":0.9609000086784363,"subfield":{"id":"https://openalex.org/subfields/3506","display_name":"Periodontics"},"field":{"id":"https://openalex.org/fields/35","display_name":"Dentistry"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6855659484863281},{"id":"https://openalex.org/keywords/mechanism","display_name":"Mechanism (biology)","score":0.5676365494728088},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.5646719932556152},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5307821035385132},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.47732120752334595},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3913966417312622},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3381543755531311},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.11295390129089355},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.07524815201759338}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6855659484863281},{"id":"https://openalex.org/C89611455","wikidata":"https://www.wikidata.org/wiki/Q6804646","display_name":"Mechanism (biology)","level":2,"score":0.5676365494728088},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.5646719932556152},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5307821035385132},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.47732120752334595},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3913966417312622},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3381543755531311},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.11295390129089355},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.07524815201759338},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3571532.3571540","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3571532.3571540","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3571532.3571540","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2022 11th International Conference on Bioinformatics and Biomedical Science","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.1145/3571532.3571540","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3571532.3571540","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3571532.3571540","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2022 11th International Conference on Bioinformatics and Biomedical Science","raw_type":"proceedings-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.5899999737739563}],"awards":[{"id":"https://openalex.org/G1233061556","display_name":null,"funder_award_id":"62162019","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5176762199","display_name":null,"funder_award_id":"11961015","funder_id":"https://openalex.org/F4320321925","funder_display_name":"Guilin University of Technology"},{"id":"https://openalex.org/G6010371941","display_name":null,"funder_award_id":"62166014","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7017181032","display_name":null,"funder_award_id":"11961015","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8899475930","display_name":null,"funder_award_id":"2018SHZDZX01","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321925","display_name":"Guilin University of Technology","ror":"https://ror.org/03z391397"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4319309790.pdf","grobid_xml":"https://content.openalex.org/works/W4319309790.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W2322763599","https://openalex.org/W2567465856","https://openalex.org/W2583889943","https://openalex.org/W2739664659","https://openalex.org/W2839708775","https://openalex.org/W2899728356","https://openalex.org/W2901312953","https://openalex.org/W2916981547","https://openalex.org/W2922817064","https://openalex.org/W2936110251","https://openalex.org/W2980767508","https://openalex.org/W2990249310","https://openalex.org/W3008655352","https://openalex.org/W3017158857","https://openalex.org/W3028823705","https://openalex.org/W3035887653","https://openalex.org/W3045879648","https://openalex.org/W3093030756","https://openalex.org/W3095002965","https://openalex.org/W3095387731","https://openalex.org/W3116529227","https://openalex.org/W3213337333","https://openalex.org/W4200469052","https://openalex.org/W4205924067","https://openalex.org/W4206577723","https://openalex.org/W4207064949","https://openalex.org/W4211110828","https://openalex.org/W4226005254","https://openalex.org/W4288430717","https://openalex.org/W4292296130","https://openalex.org/W4292712300"],"related_works":["https://openalex.org/W4293226380","https://openalex.org/W2382997850","https://openalex.org/W2390968135","https://openalex.org/W2382213751","https://openalex.org/W2351750670","https://openalex.org/W1597848696","https://openalex.org/W2354715126","https://openalex.org/W2388563748","https://openalex.org/W2375179084","https://openalex.org/W2366646518"],"abstract_inverted_index":{"Recently":[0],"clinical":[1],"evidences":[2],"have":[3],"confirmed":[4],"that":[5,150],"human":[6,14],"diseases":[7],"are":[8,34,104],"affected":[9],"by":[10,106],"the":[11,26,86,101,115,127,140,154,166,187],"microbes":[12,41,94],"inhabiting":[13],"bodies.":[15],"Identifying":[16],"latent":[17],"microbe-disease":[18,75,88,145],"associations":[19,89],"can":[20],"provide":[21],"a":[22,47,56,79,107,133],"deep":[23],"insight":[24],"into":[25],"pathogenesis":[27],"of":[28,65,100,129,161,191],"diseases.":[29,96],"However,":[30],"traditional":[31],"biological":[32],"experiments":[33,148],"inefficient":[35],"and":[36,69,90,95,163,168,182,189],"expensive":[37],"to":[38,72,125,138,143],"achieve":[39],"pathogenic":[40],"for":[42],"diseases,":[43,178],"computational":[44],"approaches":[45],"become":[46],"new":[48],"alternative":[49],"choice.":[50],"In":[51,77],"this":[52],"work,":[53],"we":[54],"introduce":[55],"graph":[57,66,109,122],"neural":[58],"network":[59,68,81,103,111],"method":[60,152],"(MLAGCNMDA)":[61],"with":[62,157],"multiple":[63,91],"layers":[64],"convolutional":[67,110,123],"attention":[70,116],"mechanism":[71,117],"predict":[73],"potential":[74],"pairs.":[76],"MLAGCNMDA,":[78],"heterogeneous":[80,102],"is":[82,118,136],"constructed":[83],"based":[84],"on":[85,176],"known":[87],"similarities":[92],"between":[93],"Moreover,":[97],"nodes":[98],"embedding":[99,142],"learned":[105],"multi-layer":[108],"model,":[112],"in":[113,120,165],"which":[114],"introduced":[119],"each":[121],"layer":[124],"distinguish":[126],"importance":[128],"neighbor":[130],"nodes.":[131],"Finally,":[132],"bilinear":[134],"decoder":[135],"used":[137],"decode":[139],"node":[141],"reconstruct":[144],"associations.":[146],"The":[147],"show":[149],"our":[151,192],"outperforms":[153],"baseline":[155],"methods":[156],"reliable":[158],"average":[159],"AUCs":[160],"0.945":[162],"0.946":[164],"Leave-one-out":[167],"5-fold":[169],"cross":[170],"validation":[171],"assessment":[172],"framework.":[173],"Case":[174],"studies":[175],"two":[177],"i.e.,":[179],"colorectal":[180],"carcinoma":[181],"liver":[183],"cirrhosis,":[184],"further":[185],"confirm":[186],"reliability":[188],"effectiveness":[190],"method.":[193]},"counts_by_year":[{"year":2023,"cited_by_count":1}],"updated_date":"2026-08-25T07:29:55.448023","created_date":"2025-10-10T00:00:00"}
