{"id":"https://openalex.org/W4318328370","doi":"https://doi.org/10.1145/3569192.3569203","title":"In Silico Drug Repurposing using Knowledge Graph Embeddings for Alzheimer's Disease","display_name":"In Silico Drug Repurposing using Knowledge Graph Embeddings for Alzheimer's Disease","publication_year":2022,"publication_date":"2022-09-18","ids":{"openalex":"https://openalex.org/W4318328370","doi":"https://doi.org/10.1145/3569192.3569203"},"language":"en","primary_location":{"id":"doi:10.1145/3569192.3569203","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3569192.3569203","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 9th International Conference on Bioinformatics Research and Applications","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019027614","display_name":"Geesa Daluwatumulle","orcid":"https://orcid.org/0000-0002-9814-3119"},"institutions":[{"id":"https://openalex.org/I90678064","display_name":"University of Colombo","ror":"https://ror.org/02phn5242","country_code":"LK","type":"education","lineage":["https://openalex.org/I90678064"]}],"countries":["LK"],"is_corresponding":true,"raw_author_name":"Geesa Daluwatumulle","raw_affiliation_strings":["University of Colombo School of Computing, Sri Lanka"],"raw_orcid":"https://orcid.org/0000-0002-9814-3119","affiliations":[{"raw_affiliation_string":"University of Colombo School of Computing, Sri Lanka","institution_ids":["https://openalex.org/I90678064"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012845416","display_name":"Rupika Wijesinghe","orcid":"https://orcid.org/0000-0001-8915-7829"},"institutions":[{"id":"https://openalex.org/I90678064","display_name":"University of Colombo","ror":"https://ror.org/02phn5242","country_code":"LK","type":"education","lineage":["https://openalex.org/I90678064"]}],"countries":["LK"],"is_corresponding":false,"raw_author_name":"Rupika Wijesinghe","raw_affiliation_strings":["University of Colombo School of Computing, Sri Lanka"],"raw_orcid":"https://orcid.org/0000-0001-8915-7829","affiliations":[{"raw_affiliation_string":"University of Colombo School of Computing, Sri Lanka","institution_ids":["https://openalex.org/I90678064"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084628821","display_name":"Ruvan Weerasinghe","orcid":"https://orcid.org/0000-0002-1392-7791"},"institutions":[{"id":"https://openalex.org/I90678064","display_name":"University of Colombo","ror":"https://ror.org/02phn5242","country_code":"LK","type":"education","lineage":["https://openalex.org/I90678064"]}],"countries":["LK"],"is_corresponding":false,"raw_author_name":"Ruvan Weerasinghe","raw_affiliation_strings":["University of Colombo School of Computing, Sri Lanka"],"raw_orcid":"https://orcid.org/0000-0002-1392-7791","affiliations":[{"raw_affiliation_string":"University of Colombo School of Computing, Sri Lanka","institution_ids":["https://openalex.org/I90678064"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5019027614"],"corresponding_institution_ids":["https://openalex.org/I90678064"],"apc_list":null,"apc_paid":null,"fwci":0.7542,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.75420863,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"61","last_page":"66"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9886000156402588,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9664999842643738,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/drug-repositioning","display_name":"Drug repositioning","score":0.9321796298027039},{"id":"https://openalex.org/keywords/repurposing","display_name":"Repurposing","score":0.6832548379898071},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6724551916122437},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5866102576255798},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5859748125076294},{"id":"https://openalex.org/keywords/cosine-similarity","display_name":"Cosine similarity","score":0.5790647864341736},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5788539052009583},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.5465589761734009},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.45590561628341675},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.4319987893104553},{"id":"https://openalex.org/keywords/drug-development","display_name":"Drug development","score":0.42660969495773315},{"id":"https://openalex.org/keywords/popularity","display_name":"Popularity","score":0.42010951042175293},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.41271740198135376},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.37639591097831726},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.301416277885437},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.1810338795185089},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.15349671244621277},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.10936218500137329}],"concepts":[{"id":"https://openalex.org/C103637391","wikidata":"https://www.wikidata.org/wiki/Q5308921","display_name":"Drug repositioning","level":3,"score":0.9321796298027039},{"id":"https://openalex.org/C519536355","wikidata":"https://www.wikidata.org/wiki/Q21021151","display_name":"Repurposing","level":2,"score":0.6832548379898071},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6724551916122437},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5866102576255798},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5859748125076294},{"id":"https://openalex.org/C2780762811","wikidata":"https://www.wikidata.org/wiki/Q1784941","display_name":"Cosine similarity","level":3,"score":0.5790647864341736},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5788539052009583},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.5465589761734009},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.45590561628341675},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.4319987893104553},{"id":"https://openalex.org/C64903051","wikidata":"https://www.wikidata.org/wiki/Q2198549","display_name":"Drug development","level":3,"score":0.42660969495773315},{"id":"https://openalex.org/C2780586970","wikidata":"https://www.wikidata.org/wiki/Q1357284","display_name":"Popularity","level":2,"score":0.42010951042175293},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.41271740198135376},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.37639591097831726},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.301416277885437},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.1810338795185089},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.15349671244621277},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.10936218500137329},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C77805123","wikidata":"https://www.wikidata.org/wiki/Q161272","display_name":"Social psychology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3569192.3569203","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3569192.3569203","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 9th International Conference on Bioinformatics Research and Applications","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.5099999904632568}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W66952839","https://openalex.org/W1969848259","https://openalex.org/W1998541454","https://openalex.org/W2063083262","https://openalex.org/W2075897300","https://openalex.org/W2076764146","https://openalex.org/W2111213181","https://openalex.org/W2114781316","https://openalex.org/W2619764443","https://openalex.org/W2746676899","https://openalex.org/W2883608678","https://openalex.org/W2896479849","https://openalex.org/W2905315292","https://openalex.org/W2922476801","https://openalex.org/W2946099214","https://openalex.org/W3019863187","https://openalex.org/W3022196642","https://openalex.org/W3026298482","https://openalex.org/W3043498388","https://openalex.org/W3044296243","https://openalex.org/W3044334750","https://openalex.org/W3049426662","https://openalex.org/W3093150592","https://openalex.org/W3121095945","https://openalex.org/W3130727496","https://openalex.org/W3167332289"],"related_works":["https://openalex.org/W2899096130","https://openalex.org/W3190782215","https://openalex.org/W2902729297","https://openalex.org/W3110500039","https://openalex.org/W4206422705","https://openalex.org/W4255531208","https://openalex.org/W4320009247","https://openalex.org/W4226161264","https://openalex.org/W3186872001","https://openalex.org/W4387302591"],"abstract_inverted_index":{"Drug":[0],"repurposing":[1],"(DR),":[2],"also":[3],"known":[4],"as":[5,63],"drug":[6,43,176],"repositioning,":[7],"is":[8,21,47,61,72,103,136],"a":[9,29,64,121,160,181,188,193],"method":[10,163],"that":[11,74,135,204],"identifies":[12],"novel":[13,89,161],"therapeutic":[14],"uses":[15],"from":[16],"existing":[17],"drugs.":[18],"This":[19],"strategy":[20],"highly":[22],"effective,":[23],"saves":[24],"time,":[25],"cost,":[26],"and":[27,40,113,116,169,192,198],"has":[28],"minimum":[30],"risk":[31,84],"factor":[32],"when":[33],"compared":[34],"with":[35,187],"the":[36,78,132,139,144,147,154,174,207],"traditional":[37],"in":[38,41,221],"vitro":[39],"vivo":[42],"development":[44],"methodologies.":[45],"DR":[46,95,155],"used":[48],"for":[49,97,138],"difficult":[50,65],"to":[51,66,93,109],"treat,":[52],"neglected,":[53],"or":[54],"incredibly":[55],"rare":[56],"diseases.":[57],"Alzheimer's":[58],"disease":[59,68,79],"(AD)":[60],"categorized":[62],"treat":[67],"since,":[69],"no":[70],"medication":[71],"available":[73],"can":[75],"slow":[76],"down":[77],"progression":[80],"without":[81],"causing":[82],"severe":[83],"factors.":[85],"In":[86],"this":[87,117],"context,":[88],"methodologies":[90],"are":[91],"vital":[92],"find":[94],"candidates":[96,156,177,208],"AD.":[98,223],"Natural":[99],"Language":[100],"Processing":[101],"(NLP)":[102],"garnering":[104],"popularity":[105],"due":[106],"its":[107],"ability":[108],"discover":[110],"unseen":[111],"knowledge":[112],"complex":[114],"associations":[115],"study":[118,140],"too":[119],"utilized":[120],"NLP":[122],"approach.":[123],"The":[124,201],"proposed":[125],"methodology":[126],"included":[127,165],"four":[128],"main":[129],"steps.":[130],"First,":[131],"text":[133,149],"data":[134,150],"needed":[137],"were":[141,151,157,178,210],"retrieved,":[142],"then":[143],"information":[145],"within":[146],"unstructured":[148],"extracted,":[152],"next,":[153],"predicted":[158,175],"using":[159],"hybrid":[162],"which":[164,209],"cosine":[166],"similarity":[167],"(CS)":[168],"link":[170],"prediction":[171],"(LP).":[172],"Finally,":[173],"fed":[179],"into":[180],"trained":[182],"machine":[183],"learning":[184],"(ML)":[185],"model":[186],"specificity":[189],"of":[190,196,206],"0.894%":[191],"f1":[194],"score":[195],"0.819%":[197],"further":[199],"validated.":[200],"analysis":[202],"showed":[203],"some":[205],"not":[211],"approved":[212],"nor":[213],"had":[214],"ongoing":[215],"clinical":[216],"trials":[217],"have":[218],"enormous":[219],"potential":[220],"treating":[222]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
