{"id":"https://openalex.org/W4367297631","doi":"https://doi.org/10.1145/3543873.3587687","title":"A Federated Learning Benchmark for Drug-Target Interaction","display_name":"A Federated Learning Benchmark for Drug-Target Interaction","publication_year":2023,"publication_date":"2023-04-28","ids":{"openalex":"https://openalex.org/W4367297631","doi":"https://doi.org/10.1145/3543873.3587687"},"language":"en","primary_location":{"id":"doi:10.1145/3543873.3587687","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3543873.3587687","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3543873.3587687","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Companion Proceedings of the ACM Web Conference 2023","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://dl.acm.org/doi/pdf/10.1145/3543873.3587687","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086142146","display_name":"Gianluca Mittone","orcid":"https://orcid.org/0000-0002-1887-6911"},"institutions":[{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Gianluca Mittone","raw_affiliation_strings":["Department of Computer Science, University of Turin, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Turin, Italy","institution_ids":["https://openalex.org/I55143463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036303644","display_name":"Filip Svoboda","orcid":"https://orcid.org/0000-0002-3183-6711"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Filip Svoboda","raw_affiliation_strings":["University of Cambridge, United Kingdom"],"affiliations":[{"raw_affiliation_string":"University of Cambridge, United Kingdom","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089092418","display_name":"Marco Aldinucci","orcid":"https://orcid.org/0000-0001-8788-0829"},"institutions":[{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marco Aldinucci","raw_affiliation_strings":["Department of Computer Science, University of Turin, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Turin, Italy","institution_ids":["https://openalex.org/I55143463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045638679","display_name":"Nicholas D. Lane","orcid":"https://orcid.org/0000-0002-2728-8273"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Nicholas Lane","raw_affiliation_strings":["University of Cambridge, United Kingdom"],"affiliations":[{"raw_affiliation_string":"University of Cambridge, United Kingdom","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056748708","display_name":"P\u00edetro Li\u00f3","orcid":"https://orcid.org/0000-0002-0540-5053"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Pietro Li\u00f3","raw_affiliation_strings":["University of Cambridge, United Kingdom"],"affiliations":[{"raw_affiliation_string":"University of Cambridge, United Kingdom","institution_ids":["https://openalex.org/I241749"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5086142146"],"corresponding_institution_ids":["https://openalex.org/I55143463"],"apc_list":null,"apc_paid":null,"fwci":2.059,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.89186016,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"1177","last_page":"1181"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.9839000105857849,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.9839000105857849,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11719","display_name":"Data Quality and Management","score":0.9829000234603882,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9416999816894531,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8086932301521301},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.722694456577301},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.6385300159454346},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.430401474237442},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4291877746582031},{"id":"https://openalex.org/keywords/labeled-data","display_name":"Labeled data","score":0.4188350439071655},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3451651930809021}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8086932301521301},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.722694456577301},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.6385300159454346},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.430401474237442},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4291877746582031},{"id":"https://openalex.org/C2776145971","wikidata":"https://www.wikidata.org/wiki/Q30673951","display_name":"Labeled data","level":2,"score":0.4188350439071655},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3451651930809021},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/3543873.3587687","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3543873.3587687","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3543873.3587687","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Companion Proceedings of the ACM Web Conference 2023","raw_type":"proceedings-article"},{"id":"pmh:oai:iris.uniroma1.it:11573/1726836","is_oa":false,"landing_page_url":"https://hdl.handle.net/11573/1726836","pdf_url":null,"source":{"id":"https://openalex.org/S4377196107","display_name":"IRIS Research product catalog (Sapienza University of Rome)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":{"id":"doi:10.1145/3543873.3587687","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3543873.3587687","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3543873.3587687","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Companion Proceedings of the ACM Web Conference 2023","raw_type":"proceedings-article"},"sustainable_development_goals":[{"display_name":"Responsible consumption and production","score":0.4099999964237213,"id":"https://metadata.un.org/sdg/12"}],"awards":[{"id":"https://openalex.org/G1402492204","display_name":"Re-thinking Efficiency in Deep Learning under Accelerators and commodity and processors","funder_award_id":"805194","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G1602567399","display_name":null,"funder_award_id":"INFRAIA-2016-1-730897","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G1698145270","display_name":null,"funder_award_id":"730897","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G2017605187","display_name":null,"funder_award_id":"H2020 Program","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G2020622295","display_name":null,"funder_award_id":"Big Data","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G2690228861","display_name":null,"funder_award_id":"101034126","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G2796667630","display_name":null,"funder_award_id":"101034126","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G2938845516","display_name":"MOA: High Efficiency Deep Learning for Embedded and Mobile Platforms (Full EPSRC Fellowship Submission)","funder_award_id":"EP/S001530/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G3650733657","display_name":null,"funder_award_id":"NextGenerationEU","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4127382081","display_name":null,"funder_award_id":"730897","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4234352910","display_name":"IRC Next Steps Plus : OPERA - Opportunistic Passive Radar for Non-Cooperative Contextual Sensing","funder_award_id":"EP/R018677/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G4246953992","display_name":null,"funder_award_id":"INFRAIA-2016-1-730897","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G4937468798","display_name":null,"funder_award_id":"H2020","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5045220161","display_name":null,"funder_award_id":"H2020","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G5649716739","display_name":null,"funder_award_id":"HPC-EUROPA3","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G5994157064","display_name":null,"funder_award_id":"INFRAIA-2016-1-73089","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G6082034655","display_name":null,"funder_award_id":"EP/R018677/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G8096572912","display_name":null,"funder_award_id":"INFRAIA-2016-1","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G8099590239","display_name":null,"funder_award_id":"EP/S001530","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G8452545418","display_name":null,"funder_award_id":"unknown","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320330055","display_name":"Irish Centre for High-End Computing","ror":"https://ror.org/04te6a418"},{"id":"https://openalex.org/F4320332999","display_name":"Horizon 2020 Framework Programme","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4367297631.pdf","grobid_xml":"https://content.openalex.org/works/W4367297631.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W2035585923","https://openalex.org/W2999351157","https://openalex.org/W3016427665","https://openalex.org/W3016632787","https://openalex.org/W3021654819","https://openalex.org/W3096561213","https://openalex.org/W3109916301","https://openalex.org/W3113037061","https://openalex.org/W3130891725","https://openalex.org/W3169231731","https://openalex.org/W3170790803","https://openalex.org/W3178709966","https://openalex.org/W4312896266","https://openalex.org/W6771536673"],"related_works":["https://openalex.org/W2378211422","https://openalex.org/W4321353415","https://openalex.org/W2745001401","https://openalex.org/W2130974462","https://openalex.org/W2028665553","https://openalex.org/W2086519370","https://openalex.org/W4246352526","https://openalex.org/W2121910908","https://openalex.org/W915438175","https://openalex.org/W3144173820"],"abstract_inverted_index":{"Aggregating":[0],"pharmaceutical":[1],"data":[2,55,100,123],"in":[3,95,102],"the":[4,31,40,53,69,81,98,103,118,125],"drug-target":[5],"interaction":[6],"(DTI)":[7],"domain":[8],"can":[9],"potentially":[10],"deliver":[11],"life-saving":[12],"breakthroughs.":[13],"It":[14,43],"is,":[15],"however,":[16],"notoriously":[17],"difficult":[18],"due":[19],"to":[20,75,80],"regulatory":[21],"constraints":[22],"and":[23,68,124],"commercial":[24],"interests":[25],"[5,":[26],"18].":[27],"This":[28],"work":[29],"proposes":[30],"application":[32],"of":[33,90,120,127],"federated":[34],"learning,":[35],"which":[36],"is":[37],"reconcilable":[38],"with":[39],"industry\u2019s":[41],"constraints.":[42],"does":[44,106],"not":[45,107],"require":[46],"sharing":[47],"any":[48,57],"information":[49],"that":[50],"would":[51],"reveal":[52],"entities\u2019":[54],"or":[56],"other":[58,96],"high-level":[59],"summary.":[60],"When":[61],"used":[62],"on":[63],"a":[64,114],"representative":[65],"GraphDTA":[66],"model":[67],"KIBA":[70],"dataset,":[71],"it":[72],"achieves":[73],"up":[74],"15%":[76],"improved":[77],"performance":[78],"relative":[79],"best":[82],"available":[83],"non-privacy":[84],"preserving":[85],"alternative.":[86],"Our":[87],"extensive":[88],"battery":[89],"experiments":[91],"shows":[92],"that,":[93],"unlike":[94],"domains,":[97],"non-IID":[99],"distribution":[101],"DTI":[104],"datasets":[105],"deteriorate":[108],"FL":[109],"performance.":[110],"Additionally,":[111],"we":[112],"identify":[113],"material":[115],"trade-off":[116],"between":[117],"benefits":[119],"adding":[121,128],"new":[122],"cost":[126],"more":[129],"clients.":[130]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1}],"updated_date":"2026-04-18T07:56:08.524223","created_date":"2025-10-10T00:00:00"}
