{"id":"https://openalex.org/W4360103960","doi":"https://doi.org/10.1145/3543873.3587601","title":"Application of an ontology for model cards to generate computable artifacts for linking machine learning information from biomedical research","display_name":"Application of an ontology for model cards to generate computable artifacts for linking machine learning information from biomedical research","publication_year":2023,"publication_date":"2023-04-28","ids":{"openalex":"https://openalex.org/W4360103960","doi":"https://doi.org/10.1145/3543873.3587601","pmid":"https://pubmed.ncbi.nlm.nih.gov/38327770"},"language":"en","primary_location":{"id":"doi:10.1145/3543873.3587601","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3543873.3587601","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Companion Proceedings of the ACM Web Conference 2023","raw_type":"proceedings-article"},"type":"preprint","indexed_in":["arxiv","crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2303.11991","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082839085","display_name":"Muhammad Amith","orcid":"https://orcid.org/0000-0003-4333-1857"},"institutions":[{"id":"https://openalex.org/I123534392","display_name":"University of North Texas","ror":"https://ror.org/00v97ad02","country_code":"US","type":"education","lineage":["https://openalex.org/I123534392"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Muhammad Amith","raw_affiliation_strings":["Department of Information Science, University of North Texas, USA"],"affiliations":[{"raw_affiliation_string":"Department of Information Science, University of North Texas, USA","institution_ids":["https://openalex.org/I123534392"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049834185","display_name":"Licong Cui","orcid":"https://orcid.org/0000-0001-5549-8780"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Licong Cui","raw_affiliation_strings":["School of Biomedical Informatics, The University of Texas Health Science Center at Houston, USA"],"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, The University of Texas Health Science Center at Houston, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046709245","display_name":"Kirk Roberts","orcid":"https://orcid.org/0000-0001-6525-5213"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kirk Roberts","raw_affiliation_strings":["School of Biomedical Informatics, The University of Texas Health Science Center at Houston, USA"],"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, The University of Texas Health Science Center at Houston, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076058129","display_name":"Cui Tao","orcid":"https://orcid.org/0000-0002-4267-1924"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cui Tao","raw_affiliation_strings":["School of Biomedical Informatics, University of Texas Health Science Center at Houston, USA"],"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, University of Texas Health Science Center at Houston, USA","institution_ids":["https://openalex.org/I919571938"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5082839085"],"corresponding_institution_ids":["https://openalex.org/I123534392"],"apc_list":null,"apc_paid":null,"fwci":1.6378,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.89126037,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":"2023","issue":"Companion","first_page":"820","last_page":"825"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.817908525466919},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.8172200322151184},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.5432459115982056},{"id":"https://openalex.org/keywords/publication","display_name":"Publication","score":0.5051596760749817},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4109118580818176},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.345400869846344},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.323820561170578},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.17629721760749817}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.817908525466919},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.8172200322151184},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.5432459115982056},{"id":"https://openalex.org/C41458344","wikidata":"https://www.wikidata.org/wiki/Q732577","display_name":"Publication","level":2,"score":0.5051596760749817},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4109118580818176},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.345400869846344},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.323820561170578},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.17629721760749817},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0},{"id":"https://openalex.org/C112698675","wikidata":"https://www.wikidata.org/wiki/Q37038","display_name":"Advertising","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1145/3543873.3587601","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3543873.3587601","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Companion Proceedings of the ACM Web Conference 2023","raw_type":"proceedings-article"},{"id":"pmid:38327770","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38327770","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the ... International World-Wide Web Conference. International WWW Conference","raw_type":null},{"id":"pmh:oai:arXiv.org:2303.11991","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2303.11991","pdf_url":"https://arxiv.org/pdf/2303.11991","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:10848146","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10848146","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10848146/pdf/nihms-1931472.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proc Int World Wide Web Conf","raw_type":"Text"},{"id":"pmh:oai:digitalcommons.library.tmc.edu:uthshis_docs-1132","is_oa":false,"landing_page_url":"https://digitalcommons.library.tmc.edu/uthshis_docs/133","pdf_url":null,"source":{"id":"https://openalex.org/S4377196655","display_name":"Digital Commons-TMC (Texas Medical Center)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1337852284","host_organization_name":"Texas Medical Center","host_organization_lineage":["https://openalex.org/I1337852284"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal Articles","raw_type":"text"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2303.11991","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2303.11991","pdf_url":"https://arxiv.org/pdf/2303.11991","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.4000000059604645}],"awards":[{"id":"https://openalex.org/G131287001","display_name":null,"funder_award_id":"RF1AG072799","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2867188093","display_name":null,"funder_award_id":"R56AI150272","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4536030481","display_name":null,"funder_award_id":"T15LM007093","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5842081610","display_name":null,"funder_award_id":"RF1AG072799, R56AG074604","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G6056677011","display_name":null,"funder_award_id":"RP220244","funder_id":"https://openalex.org/F4320308129","funder_display_name":"Cancer Prevention and Research Institute of Texas"},{"id":"https://openalex.org/G668943910","display_name":null,"funder_award_id":"R56AI150272","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G7779548177","display_name":null,"funder_award_id":"R56AG074604","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320308129","display_name":"Cancer Prevention and Research Institute of Texas","ror":"https://ror.org/0003xa228"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337337","display_name":"National Institute on Aging","ror":"https://ror.org/049v75w11"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W1482585805","https://openalex.org/W1601038846","https://openalex.org/W2098936704","https://openalex.org/W2150617113","https://openalex.org/W2261812172","https://openalex.org/W2302501749","https://openalex.org/W2405033759","https://openalex.org/W2897042519","https://openalex.org/W3100279624","https://openalex.org/W4239696231","https://openalex.org/W4285401435"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W3128275854","https://openalex.org/W2381249057","https://openalex.org/W4234751669","https://openalex.org/W2749690376","https://openalex.org/W2003333417","https://openalex.org/W2786317006","https://openalex.org/W3046170769","https://openalex.org/W4367724653","https://openalex.org/W2788563018"],"abstract_inverted_index":{"Model":[0],"card":[1,48,75],"reports":[2,49],"provide":[3],"a":[4,61],"transparent":[5],"description":[6],"of":[7,90],"machine":[8],"learning":[9],"models":[10],"which":[11],"includes":[12],"information":[13],"about":[14],"their":[15],"evaluation,":[16],"limitations,":[17],"intended":[18],"use,":[19],"etc.":[20],"Federal":[21],"health":[22],"agencies":[23],"have":[24,41],"expressed":[25],"an":[26,43],"interest":[27],"in":[28],"model":[29,45,47,74],"cards":[30],"report":[31],"for":[32,46],"research":[33],"studies":[34],"using":[35],"machine-learning":[36],"based":[37],"AI.":[38],"Previously,":[39],"we":[40,59],"developed":[42],"ontology":[44,70],"to":[50,71,93],"structure":[51],"and":[52,81,88],"formalize":[53],"these":[54],"reports.":[55,76],"In":[56],"this":[57],"paper,":[58],"demonstrate":[60],"Java-based":[62],"library":[63],"(OWL":[64],"API,":[65],"FaCT++)":[66],"that":[67,85],"leverages":[68],"our":[69],"publish":[72],"computable":[73],"We":[77],"discuss":[78],"future":[79],"directions":[80],"other":[82],"use":[83],"cases":[84],"highlight":[86],"applicability":[87],"feasibility":[89],"ontology-driven":[91],"systems":[92],"support":[94],"FAIR":[95],"challenges.":[96]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2}],"updated_date":"2026-04-13T07:58:08.660418","created_date":"2025-10-10T00:00:00"}
