{"id":"https://openalex.org/W4290671899","doi":"https://doi.org/10.1145/3543377.3543404","title":"Analysis of the Correlation between Immunogenomic Phenotype and Patient Outcomes in Prostate Cancer","display_name":"Analysis of the Correlation between Immunogenomic Phenotype and Patient Outcomes in Prostate Cancer","publication_year":2022,"publication_date":"2022-05-27","ids":{"openalex":"https://openalex.org/W4290671899","doi":"https://doi.org/10.1145/3543377.3543404"},"language":"en","primary_location":{"id":"doi:10.1145/3543377.3543404","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3543377.3543404","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 14th International Conference on Bioinformatics and Biomedical Technology","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016208533","display_name":"HAOLIN LI","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"HAOLIN LI","raw_affiliation_strings":["Crescent School,, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Crescent School,, Canada","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015087806","display_name":"JASON TENG","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"JASON TENG","raw_affiliation_strings":["Crescent School,, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Crescent School,, Canada","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079400102","display_name":"Chunbo He","orcid":"https://orcid.org/0000-0001-8250-1092"},"institutions":[{"id":"https://openalex.org/I59130452","display_name":"University of Nebraska Medical Center","ror":"https://ror.org/00thqtb16","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I59130452"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"CHUNBO HE","raw_affiliation_strings":["University of Nebraska Medical Center, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Nebraska Medical Center, USA","institution_ids":["https://openalex.org/I59130452"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.11197411,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"175","last_page":"183"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10158","display_name":"Cancer Immunotherapy and Biomarkers","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10158","display_name":"Cancer Immunotherapy and Biomarkers","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.9889000058174133,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/prostate-cancer","display_name":"Prostate cancer","score":0.8704919815063477},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.6706213355064392},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.6695091724395752},{"id":"https://openalex.org/keywords/immunotherapy","display_name":"Immunotherapy","score":0.6582592129707336},{"id":"https://openalex.org/keywords/prostate","display_name":"Prostate","score":0.5816525816917419},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.5490853190422058},{"id":"https://openalex.org/keywords/tumor-microenvironment","display_name":"Tumor microenvironment","score":0.5422564148902893},{"id":"https://openalex.org/keywords/oncology","display_name":"Oncology","score":0.5320217609405518},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.47434866428375244},{"id":"https://openalex.org/keywords/adenocarcinoma","display_name":"Adenocarcinoma","score":0.4405364990234375},{"id":"https://openalex.org/keywords/cancer-research","display_name":"Cancer research","score":0.4358363449573517},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.34779733419418335}],"concepts":[{"id":"https://openalex.org/C2780192828","wikidata":"https://www.wikidata.org/wiki/Q181257","display_name":"Prostate cancer","level":3,"score":0.8704919815063477},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.6706213355064392},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.6695091724395752},{"id":"https://openalex.org/C2777701055","wikidata":"https://www.wikidata.org/wiki/Q1427096","display_name":"Immunotherapy","level":3,"score":0.6582592129707336},{"id":"https://openalex.org/C2776235491","wikidata":"https://www.wikidata.org/wiki/Q9625","display_name":"Prostate","level":3,"score":0.5816525816917419},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.5490853190422058},{"id":"https://openalex.org/C2776107976","wikidata":"https://www.wikidata.org/wiki/Q1786433","display_name":"Tumor microenvironment","level":3,"score":0.5422564148902893},{"id":"https://openalex.org/C143998085","wikidata":"https://www.wikidata.org/wiki/Q162555","display_name":"Oncology","level":1,"score":0.5320217609405518},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.47434866428375244},{"id":"https://openalex.org/C2781182431","wikidata":"https://www.wikidata.org/wiki/Q356033","display_name":"Adenocarcinoma","level":3,"score":0.4405364990234375},{"id":"https://openalex.org/C502942594","wikidata":"https://www.wikidata.org/wiki/Q3421914","display_name":"Cancer research","level":1,"score":0.4358363449573517},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.34779733419418335}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3543377.3543404","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3543377.3543404","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 14th International Conference on Bioinformatics and Biomedical Technology","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5099999904632568,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":49,"referenced_works":["https://openalex.org/W2077645895","https://openalex.org/W2114843025","https://openalex.org/W2161112598","https://openalex.org/W2600132724","https://openalex.org/W2755108223","https://openalex.org/W2758173690","https://openalex.org/W2762392941","https://openalex.org/W2789250554","https://openalex.org/W2790362775","https://openalex.org/W2796207838","https://openalex.org/W2804868005","https://openalex.org/W2866490332","https://openalex.org/W2889646458","https://openalex.org/W2912491772","https://openalex.org/W2918019324","https://openalex.org/W2926447864","https://openalex.org/W2947554843","https://openalex.org/W2970351372","https://openalex.org/W2976744492","https://openalex.org/W2977585775","https://openalex.org/W2985152308","https://openalex.org/W3014510193","https://openalex.org/W3019295614","https://openalex.org/W3021255118","https://openalex.org/W3092187754","https://openalex.org/W3093718509","https://openalex.org/W3113156128","https://openalex.org/W3118127158","https://openalex.org/W3131690164","https://openalex.org/W3133343188","https://openalex.org/W3133798944","https://openalex.org/W3134540256","https://openalex.org/W3138104526","https://openalex.org/W3143638131","https://openalex.org/W3146533240","https://openalex.org/W3156547118","https://openalex.org/W3157486313","https://openalex.org/W3157549915","https://openalex.org/W3158912843","https://openalex.org/W3162395554","https://openalex.org/W3168348515","https://openalex.org/W3168747225","https://openalex.org/W3170529387","https://openalex.org/W3175261907","https://openalex.org/W3177358512","https://openalex.org/W3179559856","https://openalex.org/W3183953302","https://openalex.org/W4210264682","https://openalex.org/W6886190879"],"related_works":["https://openalex.org/W4200022043","https://openalex.org/W3015759778","https://openalex.org/W2088520467","https://openalex.org/W2075763133","https://openalex.org/W2376423713","https://openalex.org/W1583600832","https://openalex.org/W2112727616","https://openalex.org/W2884525857","https://openalex.org/W4322720888","https://openalex.org/W4296613612"],"abstract_inverted_index":{"Although":[0],"early-stage":[1],"prostate":[2,21,42,49,90,100,146,178,227,281,306,322],"cancer":[3,43,50,118,147,228],"remains":[4],"a":[5,52,183,190,205,243,277,287],"good":[6],"response":[7],"to":[8,127,132,311,318],"standard":[9,27],"therapies,":[10],"there":[11],"are":[12,62,84],"few":[13],"treatment":[14,28,37,317],"options":[15],"for":[16,29,86,280],"advanced":[17],"stages":[18],"or":[19],"recurrent":[20],"cancer.":[22,91,282,307,323],"Immunotherapy":[23],"is":[24],"currently":[25],"the":[26,48,57,74,80,87,112,120,163,171,253,272,292,301],"many":[30],"types":[31],"of":[32,65,73,95,123,152,173,194,226,255,258,305,315],"cancers.":[33,129,224],"However,":[34],"immune":[35,60,75,82,97,124,175,216,256,273,298,303],"checkpoint-based":[36],"showed":[38],"disappointing":[39],"outcomes":[40],"in":[41,89,99,177,231,300,321],"so":[44],"far,":[45],"suggesting":[46],"that":[47,162,271],"has":[51],"potent":[53],"immunosuppressive":[54],"microenvironment.":[55],"Since":[56],"tumor":[58,66,81,295,302],"infiltrating":[59],"cells":[61,76,98,176,296,299],"major":[63],"components":[64],"microenvironment,":[67],"here,":[68],"we":[69],"analyzed":[70,103],"cellular":[71,93],"fractions":[72],"and":[77,107,141,155,201,236,297],"investigated":[78],"if":[79],"infiltrates":[83,125,257,274],"predictors":[85],"prognosis":[88,246,278],"The":[92,308],"compositions":[94],"ten":[96],"cancers":[101],"were":[102,229,262],"by":[104,170],"using":[105],"QuanTIseq":[106],"EPIC":[108],"software":[109],"base":[110,218],"on":[111,219],"TCGA":[113],"mRNA":[114],"sequencing":[115],"data.":[116],"Prostate":[117],"had":[119,148,204,242],"lowest":[121],"percentage":[122],"compared":[126,131],"other":[128],"Moreover,":[130],"immunotherapy":[133,320],"well-responded":[134],"cancers,":[135],"such":[136],"as":[137],"melanoma,":[138],"colorectal":[139],"adenocarcinoma,":[140],"non-small":[142],"cell":[143,203],"lung":[144],"cancer,":[145],"significant":[149],"higher":[150,191],"level":[151],"M2-liked":[153],"macrophage":[154],"M2":[156,185],"/":[157,186],"M1":[158,187],"ratio.":[159],"We":[160],"found":[161],"patient":[164,208,248],"progression-free":[165,209],"survival":[166],"was":[167],"not":[168],"affected":[169],"infiltration":[172],"individual":[174],"cancer;":[179],"however,":[180],"patients":[181],"with":[182],"lower":[184],"ratio":[188],"but":[189],"total":[192],"number":[193],"CD4":[195],"T":[196,199],"cell,":[197],"CD8":[198],"cells,":[200],"dendritic":[202],"significantly":[206,244],"better":[207,245],"survival.":[210],"Thorsson":[211],"et.":[212],"al.":[213],"identified":[214],"six":[215],"subtypes":[217,232],"immunogenomic":[220],"analysis":[221],"across":[222],"33":[223],"Most":[225],"clustered":[230],"C1,":[233],"C2,":[234],"C3":[235,241,260],"C4.":[237,251],"Patients":[238],"from":[239,249,264],"subtype":[240,250,259,265],"than":[247],"Furthermore,":[252],"composition":[254],"tumors":[261],"distinct":[263],"C4":[266],"tumors.":[267],"Our":[268,283],"results":[269],"demonstrated":[270],"can":[275],"be":[276],"maker":[279],"study":[284],"also":[285],"provides":[286],"conceptual":[288],"framework":[289,309],"which":[290],"addresses":[291],"interactions":[293],"between":[294],"microenvironment":[304],"aims":[310],"support":[312],"future":[313],"designs":[314],"combined":[316],"improve":[319]},"counts_by_year":[],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
