{"id":"https://openalex.org/W4306952683","doi":"https://doi.org/10.1145/3538641.3561492","title":"ToxinMI","display_name":"ToxinMI","publication_year":2022,"publication_date":"2022-10-03","ids":{"openalex":"https://openalex.org/W4306952683","doi":"https://doi.org/10.1145/3538641.3561492"},"language":"en","primary_location":{"id":"doi:10.1145/3538641.3561492","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3538641.3561492","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Conference on Research in Adaptive and Convergent Systems","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110758704","display_name":"Lesong Wei","orcid":null},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Lesong Wei","raw_affiliation_strings":["University of Tsukuba, Japan"],"affiliations":[{"raw_affiliation_string":"University of Tsukuba, Japan","institution_ids":["https://openalex.org/I146399215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063256241","display_name":"Xiucai Ye","orcid":"https://orcid.org/0000-0002-5547-3919"},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Xiucai Ye","raw_affiliation_strings":["University of Tsukuba, Japan"],"affiliations":[{"raw_affiliation_string":"University of Tsukuba, Japan","institution_ids":["https://openalex.org/I146399215"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080813451","display_name":"Tetsuya Sakurai","orcid":"https://orcid.org/0000-0003-2046-8973"},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tetsuya Sakurai","raw_affiliation_strings":["University of Tsukuba, Japan"],"affiliations":[{"raw_affiliation_string":"University of Tsukuba, Japan","institution_ids":["https://openalex.org/I146399215"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5110758704"],"corresponding_institution_ids":["https://openalex.org/I146399215"],"apc_list":null,"apc_paid":null,"fwci":0.1716,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.48368557,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"77","last_page":"82"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7573815584182739},{"id":"https://openalex.org/keywords/discriminative-model","display_name":"Discriminative model","score":0.7523647546768188},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.6674525737762451},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6618808507919312},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5135255455970764},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5080709457397461},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.4846847355365753},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4512554407119751},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.41344618797302246},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.12282669544219971},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.09514454007148743}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7573815584182739},{"id":"https://openalex.org/C97931131","wikidata":"https://www.wikidata.org/wiki/Q5282087","display_name":"Discriminative model","level":2,"score":0.7523647546768188},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.6674525737762451},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6618808507919312},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5135255455970764},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5080709457397461},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.4846847355365753},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4512554407119751},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.41344618797302246},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.12282669544219971},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.09514454007148743},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3538641.3561492","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3538641.3561492","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Conference on Research in Adaptive and Convergent Systems","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/10","display_name":"Reduced inequalities","score":0.5699999928474426}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W1986760892","https://openalex.org/W2014274241","https://openalex.org/W2044573804","https://openalex.org/W2109109045","https://openalex.org/W2148279834","https://openalex.org/W2530149620","https://openalex.org/W2576041084","https://openalex.org/W2584676873","https://openalex.org/W2806146459","https://openalex.org/W2939071406","https://openalex.org/W2944360550","https://openalex.org/W3044326329","https://openalex.org/W3145990216","https://openalex.org/W4206722897"],"related_works":["https://openalex.org/W4380075502","https://openalex.org/W4223943233","https://openalex.org/W4312200629","https://openalex.org/W4360585206","https://openalex.org/W4364306694","https://openalex.org/W4380086463","https://openalex.org/W4225161397","https://openalex.org/W3014300295","https://openalex.org/W3164822677","https://openalex.org/W2795261237"],"abstract_inverted_index":{"Accurately":[0],"identifying":[1],"peptide":[2,42,65,84],"toxicity":[3,43,66],"is":[4,45],"a":[5,37,94],"crucial":[6],"step":[7],"for":[8,41],"computer-aided":[9],"peptide-based":[10],"drug":[11,17],"screening,":[12],"which":[13],"could":[14],"accelerate":[15],"novel":[16],"discovery":[18],"and":[19,79,86,101],"reduce":[20],"resource":[21],"consumption.":[22],"Recently,":[23],"deep":[24,38,58],"learning":[25,59],"has":[26],"shown":[27],"promising":[28],"performance":[29,120],"in":[30,35],"bioinformatics.":[31],"However,":[32],"one":[33],"challenge":[34],"developing":[36],"learning-based":[39],"model":[40,60],"prediction":[44],"how":[46],"to":[47,63,92],"represent":[48],"peptides":[49],"effectively.":[50],"In":[51],"this":[52],"study,":[53],"we":[54],"propose":[55],"an":[56],"end-to-end":[57],"named":[61],"ToxinMI,":[62],"predict":[64],"that":[67,115],"learns":[68],"features":[69,81],"directly":[70],"from":[71,105],"sequence":[72],"alone.":[73],"Precisely,":[74],"ToxinMI":[75,116],"captures":[76],"the":[77,83,88],"sequential":[78],"evolutionary":[80],"of":[82],"simultaneously":[85],"introduces":[87],"mutual":[89],"information":[90,100,104],"principle":[91],"learn":[93],"discriminative":[95],"representation":[96],"by":[97],"discarding":[98],"noisy":[99],"retaining":[102],"related-task":[103],"them":[106],"as":[107,109],"much":[108],"possible.":[110],"The":[111],"experimental":[112],"results":[113],"demonstrate":[114],"achieves":[117],"superior":[118],"predictive":[119],"against":[121],"state-of-the-art":[122],"baselines.1":[123]},"counts_by_year":[{"year":2024,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2022-10-21T00:00:00"}
