{"id":"https://openalex.org/W4288421367","doi":"https://doi.org/10.1145/3535508.3545555","title":"Using natural language processing on free-text clinical notes to identify patients with long-term COVID effects","display_name":"Using natural language processing on free-text clinical notes to identify patients with long-term COVID effects","publication_year":2022,"publication_date":"2022-07-28","ids":{"openalex":"https://openalex.org/W4288421367","doi":"https://doi.org/10.1145/3535508.3545555"},"language":"en","primary_location":{"id":"doi:10.1145/3535508.3545555","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3535508.3545555","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3535508.3545555","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 13th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://dl.acm.org/doi/pdf/10.1145/3535508.3545555","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010965105","display_name":"Yuanda Zhu","orcid":"https://orcid.org/0000-0001-7812-9216"},"institutions":[{"id":"https://openalex.org/I130701444","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44","country_code":"US","type":"education","lineage":["https://openalex.org/I130701444"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yuanda Zhu","raw_affiliation_strings":["Georgia Institute of Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Georgia Institute of Technology","institution_ids":["https://openalex.org/I130701444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037117842","display_name":"Aishwarya Mahale","orcid":"https://orcid.org/0000-0003-0437-5160"},"institutions":[{"id":"https://openalex.org/I130701444","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44","country_code":"US","type":"education","lineage":["https://openalex.org/I130701444"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aishwarya Mahale","raw_affiliation_strings":["Georgia Institute of Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Georgia Institute of Technology","institution_ids":["https://openalex.org/I130701444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008712989","display_name":"Kourtney Peters","orcid":"https://orcid.org/0000-0002-2928-169X"},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kourtney Peters","raw_affiliation_strings":["Emory University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Emory University","institution_ids":["https://openalex.org/I150468666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029733229","display_name":"Lejy Mathew","orcid":null},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lejy Mathew","raw_affiliation_strings":["Emory University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Emory University","institution_ids":["https://openalex.org/I150468666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057134532","display_name":"Felipe Giuste","orcid":"https://orcid.org/0000-0002-8355-3705"},"institutions":[{"id":"https://openalex.org/I130701444","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44","country_code":"US","type":"education","lineage":["https://openalex.org/I130701444"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Felipe Giuste","raw_affiliation_strings":["Georgia Institute of Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Georgia Institute of Technology","institution_ids":["https://openalex.org/I130701444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107722843","display_name":"Blake Anderson","orcid":"https://orcid.org/0000-0002-4956-6721"},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Blake Anderson","raw_affiliation_strings":["Emory University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Emory University","institution_ids":["https://openalex.org/I150468666"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030096887","display_name":"May D. Wang","orcid":"https://orcid.org/0000-0003-3961-3608"},"institutions":[{"id":"https://openalex.org/I130701444","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44","country_code":"US","type":"education","lineage":["https://openalex.org/I130701444"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"May D. Wang","raw_affiliation_strings":["Georgia Institute of Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Georgia Institute of Technology","institution_ids":["https://openalex.org/I130701444"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":2.6361,"has_fulltext":true,"cited_by_count":21,"citation_normalized_percentile":{"value":0.91162057,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"9"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11775","display_name":"COVID-19 diagnosis using AI","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12574","display_name":"Clinical Reasoning and Diagnostic Skills","score":0.9842000007629395,"subfield":{"id":"https://openalex.org/subfields/2714","display_name":"Family Practice"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.8009289503097534},{"id":"https://openalex.org/keywords/severe-acute-respiratory-syndrome-coronavirus-2","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","score":0.5735358595848083},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.5654149651527405},{"id":"https://openalex.org/keywords/term","display_name":"Term (time)","score":0.5464568734169006},{"id":"https://openalex.org/keywords/recall","display_name":"Recall","score":0.5081808567047119},{"id":"https://openalex.org/keywords/2019-20-coronavirus-outbreak","display_name":"2019-20 coronavirus outbreak","score":0.4940255284309387},{"id":"https://openalex.org/keywords/natural-history","display_name":"Natural history","score":0.45142072439193726},{"id":"https://openalex.org/keywords/intensive-care-medicine","display_name":"Intensive care medicine","score":0.406446635723114},{"id":"https://openalex.org/keywords/pediatrics","display_name":"Pediatrics","score":0.3439306914806366},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3328237533569336},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3064562976360321},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.20652544498443604},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.18924054503440857},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.15099075436592102},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.1234784722328186},{"id":"https://openalex.org/keywords/cognitive-psychology","display_name":"Cognitive psychology","score":0.08332407474517822},{"id":"https://openalex.org/keywords/infectious-disease","display_name":"Infectious disease (medical specialty)","score":0.08107107877731323}],"concepts":[{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.8009289503097534},{"id":"https://openalex.org/C3007834351","wikidata":"https://www.wikidata.org/wiki/Q82069695","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","level":5,"score":0.5735358595848083},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.5654149651527405},{"id":"https://openalex.org/C61797465","wikidata":"https://www.wikidata.org/wiki/Q1188986","display_name":"Term (time)","level":2,"score":0.5464568734169006},{"id":"https://openalex.org/C100660578","wikidata":"https://www.wikidata.org/wiki/Q18733","display_name":"Recall","level":2,"score":0.5081808567047119},{"id":"https://openalex.org/C3006700255","wikidata":"https://www.wikidata.org/wiki/Q81068910","display_name":"2019-20 coronavirus outbreak","level":3,"score":0.4940255284309387},{"id":"https://openalex.org/C163276114","wikidata":"https://www.wikidata.org/wiki/Q484591","display_name":"Natural history","level":2,"score":0.45142072439193726},{"id":"https://openalex.org/C177713679","wikidata":"https://www.wikidata.org/wiki/Q679690","display_name":"Intensive care medicine","level":1,"score":0.406446635723114},{"id":"https://openalex.org/C187212893","wikidata":"https://www.wikidata.org/wiki/Q123028","display_name":"Pediatrics","level":1,"score":0.3439306914806366},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3328237533569336},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3064562976360321},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.20652544498443604},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.18924054503440857},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.15099075436592102},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.1234784722328186},{"id":"https://openalex.org/C180747234","wikidata":"https://www.wikidata.org/wiki/Q23373","display_name":"Cognitive psychology","level":1,"score":0.08332407474517822},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.08107107877731323},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C116675565","wikidata":"https://www.wikidata.org/wiki/Q3241045","display_name":"Outbreak","level":2,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3535508.3545555","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3535508.3545555","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3535508.3545555","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 13th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.1145/3535508.3545555","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3535508.3545555","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3535508.3545555","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 13th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.6800000071525574}],"awards":[],"funders":[{"id":"https://openalex.org/F4320308943","display_name":"Microsoft Research","ror":"https://ror.org/00d0nc645"},{"id":"https://openalex.org/F4320309321","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4288421367.pdf","grobid_xml":"https://content.openalex.org/works/W4288421367.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1787224781","https://openalex.org/W2068811222","https://openalex.org/W2282821441","https://openalex.org/W2295107390","https://openalex.org/W2493916176","https://openalex.org/W2911489562","https://openalex.org/W2962858109","https://openalex.org/W2982424689","https://openalex.org/W3038241312","https://openalex.org/W3038294580","https://openalex.org/W3040299034","https://openalex.org/W3043240831","https://openalex.org/W3046375318","https://openalex.org/W3047833576","https://openalex.org/W3048835162","https://openalex.org/W3081007079","https://openalex.org/W3081832835","https://openalex.org/W3105344268","https://openalex.org/W3116869472","https://openalex.org/W3119322361","https://openalex.org/W3153912282","https://openalex.org/W3156717587","https://openalex.org/W3180256422","https://openalex.org/W3184324824","https://openalex.org/W3188934550","https://openalex.org/W3192563839","https://openalex.org/W3194737219","https://openalex.org/W4223926712","https://openalex.org/W4226293412"],"related_works":["https://openalex.org/W4206669628","https://openalex.org/W3036314732","https://openalex.org/W4205317059","https://openalex.org/W3009669391","https://openalex.org/W3127156785","https://openalex.org/W4200329650","https://openalex.org/W4382894326","https://openalex.org/W3198183218","https://openalex.org/W3176864053","https://openalex.org/W3113664224"],"abstract_inverted_index":{"As":[0],"of":[1,29,55],"May":[2],"15th,":[3],"2022,":[4],"the":[5,23,52,130],"novel":[6],"coronavirus":[7],"SARS-COV-2":[8],"has":[9],"infected":[10],"517":[11],"million":[12,20],"people":[13],"and":[14,47,68,133],"resulted":[15],"in":[16,45,100],"more":[17],"than":[18],"6.2":[19],"deaths":[21],"around":[22],"world.":[24],"About":[25],"40%":[26],"to":[27,74,97,111,140,145,164,172],"87%":[28],"patients":[30,90,101,114,147,166],"suffer":[31],"from":[32,85],"persistent":[33,151],"symptoms":[34,152,171],"weeks":[35],"or":[36],"months":[37],"after":[38,153],"their":[39],"original":[40],"infection.":[41,156],"Despite":[42],"remarkable":[43],"progress":[44],"preventing":[46],"treating":[48],"acute":[49,154],"COVID-19":[50],"conditions,":[51],"clinical":[53,66,83],"diagnosis":[54],"long-term":[56,76,103,116,169],"COVID":[57,77,104,117,155,170],"remains":[58],"difficult.":[59],"In":[60],"this":[61,158],"work,":[62,159],"we":[63],"use":[64],"free-text":[65,82],"notes":[67,84],"natural":[69],"language":[70],"processing":[71],"(NLP)":[72],"techniques":[73],"explore":[75],"effects.":[78],"We":[79,106,127],"first":[80],"obtain":[81],"719":[86],"outpatient":[87],"encounters":[88],"representing":[89],"treated":[91],"by":[92],"physicians":[93],"at":[94],"Emory":[95],"Clinic":[96],"detect":[98],"patterns":[99],"with":[102,115],"symptoms.":[105],"apply":[107],"state-of-the-art":[108],"NLP":[109],"frameworks":[110],"automatically":[112],"identify":[113,146,165],"effects,":[118],"achieving":[119],"0.881":[120],"recall":[121],"(sensitivity)":[122],"score":[123],"for":[124],"note-level":[125],"prediction.":[126],"further":[128],"interpret":[129],"prediction":[131],"outcomes":[132],"discuss":[134],"potential":[135],"phenotypes.":[136],"Our":[137],"work":[138],"aims":[139],"provide":[141],"a":[142],"data-driven":[143],"solution":[144],"who":[148,167],"have":[149,168],"developed":[150],"With":[157],"clinicians":[160],"may":[161],"be":[162],"able":[163],"optimize":[173],"treatment.":[174]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":1}],"updated_date":"2026-06-12T08:23:45.883708","created_date":"2025-10-10T00:00:00"}
