{"id":"https://openalex.org/W4288421388","doi":"https://doi.org/10.1145/3535508.3545529","title":"Statistical methodology for ribosomal frameshift detection","display_name":"Statistical methodology for ribosomal frameshift detection","publication_year":2022,"publication_date":"2022-07-28","ids":{"openalex":"https://openalex.org/W4288421388","doi":"https://doi.org/10.1145/3535508.3545529","pmid":"https://pubmed.ncbi.nlm.nih.gov/40766748"},"language":"en","primary_location":{"id":"doi:10.1145/3535508.3545529","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3535508.3545529","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 13th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12324068","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085153139","display_name":"Alisa Yurovsky","orcid":"https://orcid.org/0000-0002-7500-7907"},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alisa Yurovsky","raw_affiliation_strings":["Stony Brook University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stony Brook University","institution_ids":["https://openalex.org/I59553526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033713990","display_name":"Justin Gardin","orcid":"https://orcid.org/0000-0001-8495-6728"},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Justin Gardin","raw_affiliation_strings":["Stony Brook University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stony Brook University","institution_ids":["https://openalex.org/I59553526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058936721","display_name":"Bruce Futcher","orcid":"https://orcid.org/0000-0002-1012-9022"},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bruce Futcher","raw_affiliation_strings":["Stony Brook University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stony Brook University","institution_ids":["https://openalex.org/I59553526"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060741187","display_name":"Steven Skiena","orcid":"https://orcid.org/0000-0003-0397-7514"},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Steven Skiena","raw_affiliation_strings":["Stony Brook University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stony Brook University","institution_ids":["https://openalex.org/I59553526"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I59553526"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"2022","issue":null,"first_page":"1","last_page":"10"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.9897000193595886,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11112","display_name":"Viral Infections and Immunology Research","score":0.9800999760627747,"subfield":{"id":"https://openalex.org/subfields/2705","display_name":"Cardiology and Cardiovascular Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5570921897888184},{"id":"https://openalex.org/keywords/frameshift-mutation","display_name":"Frameshift mutation","score":0.4848085939884186},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3311968445777893},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08142948150634766},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07481968402862549}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5570921897888184},{"id":"https://openalex.org/C29906990","wikidata":"https://www.wikidata.org/wiki/Q1440688","display_name":"Frameshift mutation","level":4,"score":0.4848085939884186},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3311968445777893},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08142948150634766},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07481968402862549},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1145/3535508.3545529","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3535508.3545529","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 13th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"},{"id":"pmid:40766748","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40766748","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ACM-BCB ... ... : the ... ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12324068","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12324068","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ACM BCB","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:12324068","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12324068","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ACM BCB","raw_type":"Text"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.7400000095367432}],"awards":[{"id":"https://openalex.org/G3657034895","display_name":null,"funder_award_id":"R01GM127542-04","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4460797665","display_name":null,"funder_award_id":"2030859,GRFP-1315232,IIS-1926781,IIS-1927227,IIS-1546113,OAC-1919752","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6871603350","display_name":null,"funder_award_id":"R01 GM127542","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":33,"referenced_works":["https://openalex.org/W1565619177","https://openalex.org/W1970684977","https://openalex.org/W1976522966","https://openalex.org/W1984700926","https://openalex.org/W1992913186","https://openalex.org/W2020663470","https://openalex.org/W2057850601","https://openalex.org/W2059444842","https://openalex.org/W2074149540","https://openalex.org/W2079517684","https://openalex.org/W2083147729","https://openalex.org/W2088918459","https://openalex.org/W2097954818","https://openalex.org/W2099502558","https://openalex.org/W2103502154","https://openalex.org/W2133469761","https://openalex.org/W2137382844","https://openalex.org/W2145382902","https://openalex.org/W2146278610","https://openalex.org/W2146335626","https://openalex.org/W2150010656","https://openalex.org/W2161229339","https://openalex.org/W2162170988","https://openalex.org/W2163672244","https://openalex.org/W2327873403","https://openalex.org/W2493667413","https://openalex.org/W2531215563","https://openalex.org/W2535672210","https://openalex.org/W2622769433","https://openalex.org/W2732144023","https://openalex.org/W2796260285","https://openalex.org/W2911351489","https://openalex.org/W2956329239"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W4207058155","https://openalex.org/W2404943785","https://openalex.org/W2125459609","https://openalex.org/W4281725104","https://openalex.org/W2021382013","https://openalex.org/W1989496903","https://openalex.org/W2390578563"],"abstract_inverted_index":{"During":[0],"normal":[1],"protein":[2,23],"synthesis,":[3],"the":[4,8,22,30,33,37,43,48],"ribosome":[5,38],"shifts":[6,42],"along":[7],"messenger":[9],"RNA":[10],"(mRNA)":[11],"by":[12,110],"exactly":[13],"three":[14],"nucleotides":[15],"for":[16],"each":[17],"amino":[18],"acid":[19],"added":[20],"to":[21,39,55,92],"being":[24],"translated.":[25],"However,":[26,82],"in":[27,46,65,79,113],"special":[28],"cases,":[29],"sequence":[31],"of":[32,73,96,106],"mRNA":[34,49],"somehow":[35],"induces":[36],"slip,":[40],"which":[41,47],"\"reading":[44],"frame\"":[45],"is":[50,84,101],"translated,":[51],"and":[52,69,115],"gives":[53],"rise":[54],"an":[56],"otherwise":[57],"unexpected":[58],"protein.":[59],"Such":[60],"\"programmed":[61],"frameshifts\"":[62],"are":[63,76],"well-known":[64],"viruses,":[66],"including":[67],"coronavirus,":[68],"a":[70],"few":[71],"cases":[72,95],"programmed":[74,97,111],"frameshifting":[75,112],"also":[77],"known":[78],"cellular":[80,107],"genes.":[81],"there":[83],"no":[85],"good":[86],"way,":[87],"either":[88],"experimental":[89],"or":[90],"informatic,":[91],"identify":[93],"novel":[94],"frameshifting.":[98],"Thus":[99],"it":[100],"possible":[102],"that":[103],"substantial":[104],"numbers":[105],"proteins":[108],"generated":[109],"human":[114],"other":[116],"organisms":[117],"remain":[118],"unknown.":[119]},"counts_by_year":[],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
