{"id":"https://openalex.org/W4290948309","doi":"https://doi.org/10.1145/3534678.3542676","title":"MolSearch","display_name":"MolSearch","publication_year":2022,"publication_date":"2022-08-12","ids":{"openalex":"https://openalex.org/W4290948309","doi":"https://doi.org/10.1145/3534678.3542676","pmid":"https://pubmed.ncbi.nlm.nih.gov/37056719"},"language":"en","primary_location":{"id":"doi:10.1145/3534678.3542676","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3534678.3542676","pdf_url":null,"source":{"id":"https://openalex.org/S4363608767","display_name":"Proceedings of the 28th ACM SIGKDD Conference on Knowledge Discovery and Data Mining","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 28th ACM SIGKDD Conference on Knowledge Discovery and Data Mining","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10097503/pdf/nihms-1888099.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047159613","display_name":"Mengying Sun","orcid":"https://orcid.org/0000-0002-8947-0345"},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mengying Sun","raw_affiliation_strings":["Michigan State University, East Lansing, MI, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Michigan State University, East Lansing, MI, USA","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078283071","display_name":"Jing Xing","orcid":"https://orcid.org/0000-0003-4726-8525"},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jing Xing","raw_affiliation_strings":["Michigan State University, Grand Rapids, MI, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Michigan State University, Grand Rapids, MI, USA","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100785901","display_name":"Meng Han","orcid":"https://orcid.org/0000-0001-7472-0842"},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Han Meng","raw_affiliation_strings":["Michigan State University, East Lansing, MI, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Michigan State University, East Lansing, MI, USA","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100416397","display_name":"Huijun Wang","orcid":"https://orcid.org/0000-0002-2355-6074"},"institutions":[{"id":"https://openalex.org/I4210092565","display_name":"Agios Pharmaceuticals (United States)","ror":"https://ror.org/002x06r10","country_code":"US","type":"company","lineage":["https://openalex.org/I4210092565"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Huijun Wang","raw_affiliation_strings":["Agios Pharmaceuticals, Cambridge, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Agios Pharmaceuticals, Cambridge, MA, USA","institution_ids":["https://openalex.org/I4210092565"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100427284","display_name":"Bin Chen","orcid":"https://orcid.org/0000-0001-8709-2419"},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bin Chen","raw_affiliation_strings":["Michigan State University, Grand Rapids, MI, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Michigan State University, Grand Rapids, MI, USA","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5047215778","display_name":"Jiayu Zhou","orcid":"https://orcid.org/0000-0003-4336-6777"},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jiayu Zhou","raw_affiliation_strings":["Michigan State University, East Lansing, MI, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Michigan State University, East Lansing, MI, USA","institution_ids":["https://openalex.org/I87216513"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":21,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"2022","issue":null,"first_page":"4724","last_page":"4732"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7811107635498047},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.6997976303100586},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.5651074647903442},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.5037931799888611},{"id":"https://openalex.org/keywords/transformation","display_name":"Transformation (genetics)","score":0.48065125942230225},{"id":"https://openalex.org/keywords/property","display_name":"Property (philosophy)","score":0.46280142664909363},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.45407944917678833},{"id":"https://openalex.org/keywords/chemical-space","display_name":"Chemical space","score":0.4230028986930847},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3338969945907593},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.2978334128856659},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.08474791049957275}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7811107635498047},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.6997976303100586},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.5651074647903442},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.5037931799888611},{"id":"https://openalex.org/C204241405","wikidata":"https://www.wikidata.org/wiki/Q461499","display_name":"Transformation (genetics)","level":3,"score":0.48065125942230225},{"id":"https://openalex.org/C189950617","wikidata":"https://www.wikidata.org/wiki/Q937228","display_name":"Property (philosophy)","level":2,"score":0.46280142664909363},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.45407944917678833},{"id":"https://openalex.org/C99726746","wikidata":"https://www.wikidata.org/wiki/Q906396","display_name":"Chemical space","level":3,"score":0.4230028986930847},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3338969945907593},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.2978334128856659},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.08474791049957275},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1145/3534678.3542676","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3534678.3542676","pdf_url":null,"source":{"id":"https://openalex.org/S4363608767","display_name":"Proceedings of the 28th ACM SIGKDD Conference on Knowledge Discovery and Data Mining","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 28th ACM SIGKDD Conference on Knowledge Discovery and Data Mining","raw_type":"proceedings-article"},{"id":"pmid:37056719","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37056719","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"KDD : proceedings. International Conference on Knowledge Discovery & Data Mining","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10097503","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10097503","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10097503/pdf/nihms-1888099.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"KDD","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:10097503","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10097503","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10097503/pdf/nihms-1888099.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"KDD","raw_type":"Text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3577022761","display_name":null,"funder_award_id":"N00014-20-1-2382","funder_id":"https://openalex.org/F4320337345","funder_display_name":"Office of Naval Research"},{"id":"https://openalex.org/G5565921875","display_name":null,"funder_award_id":"RF1 AG072449","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G5993823890","display_name":null,"funder_award_id":"R01 GM134307","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320337337","display_name":"National Institute on Aging","ror":"https://ror.org/049v75w11"},{"id":"https://openalex.org/F4320337345","display_name":"Office of Naval Research","ror":"https://ror.org/00rk2pe57"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4290948309.pdf","grobid_xml":"https://content.openalex.org/works/W4290948309.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W1625390266","https://openalex.org/W1984994707","https://openalex.org/W1988037271","https://openalex.org/W1997840820","https://openalex.org/W2005518172","https://openalex.org/W2034549041","https://openalex.org/W2041686943","https://openalex.org/W2076337359","https://openalex.org/W2112411768","https://openalex.org/W2126316555","https://openalex.org/W2151697120","https://openalex.org/W2160592148","https://openalex.org/W2192203593","https://openalex.org/W2529996553","https://openalex.org/W2554099577","https://openalex.org/W2578240541","https://openalex.org/W2763220183","https://openalex.org/W2765224015","https://openalex.org/W2793945656","https://openalex.org/W2900090807","https://openalex.org/W2914542247","https://openalex.org/W2945551948","https://openalex.org/W2963028280","https://openalex.org/W2963445908","https://openalex.org/W2963609389","https://openalex.org/W2972741532","https://openalex.org/W3036527662","https://openalex.org/W3044646866","https://openalex.org/W3098269892","https://openalex.org/W3099414221","https://openalex.org/W3104956673","https://openalex.org/W3126415747","https://openalex.org/W3139062830","https://openalex.org/W4230189600","https://openalex.org/W6669402789"],"related_works":["https://openalex.org/W2378211422","https://openalex.org/W2902857455","https://openalex.org/W2745001401","https://openalex.org/W4321353415","https://openalex.org/W2130974462","https://openalex.org/W972276598","https://openalex.org/W4246352526","https://openalex.org/W2028665553","https://openalex.org/W2086519370","https://openalex.org/W2601353981"],"abstract_inverted_index":{"Leveraging":[0],"computational":[1,100],"methods":[2,74,85],"to":[3,115],"generate":[4],"small":[5],"molecules":[6,28,108],"with":[7,106],"desired":[8],"properties":[9],"has":[10],"been":[11],"an":[12],"active":[13],"research":[14],"area":[15],"in":[16,137],"the":[17],"drug":[18],"discovery":[19],"field.":[20],"Towards":[21],"real-world":[22],"applications,":[23],"however,":[24],"efficient":[25],"generation":[26,62,140],"of":[27,95],"that":[29,65],"satisfy":[30],"multiple":[31,138],"property":[32],"requirements":[33],"simultaneously":[34],"remains":[35],"a":[36,47,52,111],"key":[37],"challenge.":[38],"In":[39,102],"this":[40,44],"paper,":[41],"we":[42],"tackle":[43],"challenge":[45],"using":[46],"search-based":[48,73],"approach":[49],"and":[50,69,109,128,142,146],"propose":[51],"simple":[53],"yet":[54],"effective":[55],"framework":[56],"called":[57],"MolSearch":[58,104,136],"for":[59],"multi-objective":[60],"molecular":[61],"(optimization).We":[63],"show":[64],"given":[66,98],"proper":[67],"design":[68],"sufficient":[70],"domain":[71],"information,":[72],"can":[75],"achieve":[76],"performance":[77],"comparable":[78],"or":[79],"even":[80],"better":[81],"than":[82],"deep":[83],"learning":[84],"while":[86],"being":[87],"computationally":[88],"efficient.":[89],"Such":[90],"efficiency":[91],"enables":[92],"massive":[93],"exploration":[94],"chemical":[96],"space":[97],"constrained":[99],"resources.":[101],"particular,":[103],"starts":[105],"existing":[107],"uses":[110],"two-stage":[112],"search":[113],"strategy":[114],"gradually":[116],"modify":[117],"them":[118],"into":[119],"new":[120],"ones,":[121],"based":[122],"on":[123],"transformation":[124],"rules":[125],"derived":[126],"systematically":[127],"exhaustively":[129],"from":[130],"large":[131],"compound":[132],"libraries.":[133],"We":[134],"evaluate":[135],"benchmark":[139],"settings":[141],"demonstrate":[143],"its":[144],"effectiveness":[145],"efficiency.":[147]},"counts_by_year":[{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":3}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2022-08-13T00:00:00"}
