{"id":"https://openalex.org/W4290927877","doi":"https://doi.org/10.1145/3534678.3539168","title":"SAMCNet: Towards a Spatially Explainable AI Approach for Classifying MxIF Oncology Data","display_name":"SAMCNet: Towards a Spatially Explainable AI Approach for Classifying MxIF Oncology Data","publication_year":2022,"publication_date":"2022-08-12","ids":{"openalex":"https://openalex.org/W4290927877","doi":"https://doi.org/10.1145/3534678.3539168"},"language":"en","primary_location":{"id":"doi:10.1145/3534678.3539168","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3534678.3539168","pdf_url":null,"source":{"id":"https://openalex.org/S4363608767","display_name":"Proceedings of the 28th ACM SIGKDD Conference on Knowledge Discovery and Data Mining","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 28th ACM SIGKDD Conference on Knowledge Discovery and Data Mining","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059176320","display_name":"Majid Farhadloo","orcid":"https://orcid.org/0000-0001-8602-0165"},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Majid Farhadloo","raw_affiliation_strings":["University of Minnesota, Minneapolis, MN, USA"],"affiliations":[{"raw_affiliation_string":"University of Minnesota, Minneapolis, MN, USA","institution_ids":["https://openalex.org/I130238516"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091336347","display_name":"Carl Molnar","orcid":null},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Carl Molnar","raw_affiliation_strings":["University of Minnesota, Minneapolis, MN, USA"],"affiliations":[{"raw_affiliation_string":"University of Minnesota, Minneapolis, MN, USA","institution_ids":["https://openalex.org/I130238516"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060490066","display_name":"Gaoxiang Luo","orcid":"https://orcid.org/0000-0001-6172-9784"},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gaoxiang Luo","raw_affiliation_strings":["University of Minnesota, Minneapolis, MN, USA"],"affiliations":[{"raw_affiliation_string":"University of Minnesota, Minneapolis, MN, USA","institution_ids":["https://openalex.org/I130238516"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100380453","display_name":"Yan Li","orcid":"https://orcid.org/0009-0000-9658-0545"},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yan Li","raw_affiliation_strings":["University of Minnesota, Minneapolis, MN, USA"],"affiliations":[{"raw_affiliation_string":"University of Minnesota, Minneapolis, MN, USA","institution_ids":["https://openalex.org/I130238516"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037233397","display_name":"Shashi Shekhar","orcid":"https://orcid.org/0000-0001-8837-192X"},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shashi Shekhar","raw_affiliation_strings":["University of Minnesota, Minneapolis, MN, USA"],"affiliations":[{"raw_affiliation_string":"University of Minnesota, Minneapolis, MN, USA","institution_ids":["https://openalex.org/I130238516"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081845545","display_name":"Rachel L.G. Maus","orcid":null},"institutions":[{"id":"https://openalex.org/I4210125099","display_name":"Mayo Clinic in Arizona","ror":"https://ror.org/03jp40720","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210125099"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rachel L. Maus","raw_affiliation_strings":["Mayo Clinic, Rochester , MN, USA"],"affiliations":[{"raw_affiliation_string":"Mayo Clinic, Rochester , MN, USA","institution_ids":["https://openalex.org/I4210125099"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082719040","display_name":"Svetomir N. Markovic","orcid":"https://orcid.org/0000-0002-9238-4325"},"institutions":[{"id":"https://openalex.org/I4210125099","display_name":"Mayo Clinic in Arizona","ror":"https://ror.org/03jp40720","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210125099"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Svetomir Markovic","raw_affiliation_strings":["Mayo Clinic, Rochester, MN, USA"],"affiliations":[{"raw_affiliation_string":"Mayo Clinic, Rochester, MN, USA","institution_ids":["https://openalex.org/I4210125099"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085479273","display_name":"Alexey A. Leontovich","orcid":null},"institutions":[{"id":"https://openalex.org/I4210125099","display_name":"Mayo Clinic in Arizona","ror":"https://ror.org/03jp40720","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210125099"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alexey Leontovich","raw_affiliation_strings":["Mayo Clinic, Rochester, MN, USA"],"affiliations":[{"raw_affiliation_string":"Mayo Clinic, Rochester, MN, USA","institution_ids":["https://openalex.org/I4210125099"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022046310","display_name":"Raymond C. Moore","orcid":null},"institutions":[{"id":"https://openalex.org/I4210125099","display_name":"Mayo Clinic in Arizona","ror":"https://ror.org/03jp40720","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210125099"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Raymond Moore","raw_affiliation_strings":["Mayo Clinic, Rochester, MN, USA"],"affiliations":[{"raw_affiliation_string":"Mayo Clinic, Rochester, MN, USA","institution_ids":["https://openalex.org/I4210125099"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5059176320"],"corresponding_institution_ids":["https://openalex.org/I130238516"],"apc_list":null,"apc_paid":null,"fwci":0.3598,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.66704691,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"2860","last_page":"2870"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10824","display_name":"Image Retrieval and Classification Techniques","score":0.984000027179718,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10824","display_name":"Image Retrieval and Classification Techniques","score":0.984000027179718,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9776999950408936,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9724000096321106,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/prioritization","display_name":"Prioritization","score":0.7148051261901855},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.6871219873428345},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6652591228485107},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6566401720046997},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5604967474937439},{"id":"https://openalex.org/keywords/spatial-analysis","display_name":"Spatial analysis","score":0.5196675062179565},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.4796053171157837},{"id":"https://openalex.org/keywords/architecture","display_name":"Architecture","score":0.44574299454689026},{"id":"https://openalex.org/keywords/point","display_name":"Point (geometry)","score":0.43052539229393005},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.343254029750824},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.16128462553024292},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.13985934853553772},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.107479989528656}],"concepts":[{"id":"https://openalex.org/C2777615720","wikidata":"https://www.wikidata.org/wiki/Q11888847","display_name":"Prioritization","level":2,"score":0.7148051261901855},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.6871219873428345},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6652591228485107},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6566401720046997},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5604967474937439},{"id":"https://openalex.org/C159620131","wikidata":"https://www.wikidata.org/wiki/Q1938983","display_name":"Spatial analysis","level":2,"score":0.5196675062179565},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.4796053171157837},{"id":"https://openalex.org/C123657996","wikidata":"https://www.wikidata.org/wiki/Q12271","display_name":"Architecture","level":2,"score":0.44574299454689026},{"id":"https://openalex.org/C28719098","wikidata":"https://www.wikidata.org/wiki/Q44946","display_name":"Point (geometry)","level":2,"score":0.43052539229393005},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.343254029750824},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.16128462553024292},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.13985934853553772},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.107479989528656},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C539667460","wikidata":"https://www.wikidata.org/wiki/Q2414942","display_name":"Management science","level":1,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3534678.3539168","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3534678.3539168","pdf_url":null,"source":{"id":"https://openalex.org/S4363608767","display_name":"Proceedings of the 28th ACM SIGKDD Conference on Knowledge Discovery and Data Mining","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 28th ACM SIGKDD Conference on Knowledge Discovery and Data Mining","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W1515526911","https://openalex.org/W1938027614","https://openalex.org/W2042284130","https://openalex.org/W2743344672","https://openalex.org/W2793226746","https://openalex.org/W2901512056","https://openalex.org/W2915933710","https://openalex.org/W2980909418","https://openalex.org/W3028857369","https://openalex.org/W3096967708","https://openalex.org/W3104211245","https://openalex.org/W3109019356","https://openalex.org/W3173096232","https://openalex.org/W4200300652","https://openalex.org/W4206193346","https://openalex.org/W4236965008","https://openalex.org/W4247466386"],"related_works":["https://openalex.org/W2506292322","https://openalex.org/W4283209547","https://openalex.org/W4367627632","https://openalex.org/W2184980933","https://openalex.org/W2165268799","https://openalex.org/W653452717","https://openalex.org/W2516182304","https://openalex.org/W2554445088","https://openalex.org/W1595456161","https://openalex.org/W2621003306"],"abstract_inverted_index":{"The":[0],"goal":[1],"of":[2,77,86,116,137],"spatially":[3,168],"explainable":[4,169],"artificial":[5],"intelligence":[6],"(AI)":[7],"classification":[8],"approach":[9],"is":[10,44,70],"to":[11,15,73,128,213],"build":[12],"a":[13,146],"classifier":[14],"distinguish":[16],"two":[17,40],"classes":[18],"(e.g.,":[19,28,110,177],"responder,":[20],"non-responder)":[21],"based":[22],"on":[23,93,173],"the":[24,84,106,121,181,197,206,211],"their":[25,87],"spatial":[26,29,88,97,108],"arrangements":[27],"interactions":[30,109],"between":[31],"different":[32],"point":[33,37,138,163],"categories)":[34],"given":[35],"multi-category":[36],"data":[38],"from":[39],"classes.":[41],"This":[42,68],"problem":[43,69],"important":[45],"for":[46,53,59,104,167],"generating":[47],"hypotheses":[48],"towards":[49],"discovering":[50],"new":[51,215],"immunotherapies":[52],"cancer":[54,175],"treatment":[55],"as":[56,58],"well":[57],"other":[60],"applications":[61],"in":[62,83],"biomedical":[63],"research":[64],"and":[65,131,155,162,209],"microbial":[66],"ecology.":[67],"challenging":[71],"due":[72],"an":[74],"exponential":[75],"number":[76],"category":[78,129],"subsets":[79,136],"which":[80,113],"may":[81,100,114],"vary":[82],"strength":[85],"interactions.":[89],"Most":[90],"prior":[91],"efforts":[92],"using":[94],"human":[95],"selected":[96],"association":[98],"measures":[99],"not":[101,133],"be":[102,115],"sufficient":[103],"capturing":[105],"relevant":[107],"surrounded":[111],"by)":[112],"biological":[117],"significance.":[118],"In":[119],"addition,":[120],"related":[122],"deep":[123,150],"neural":[124,151],"networks":[125],"are":[126,203],"limited":[127],"pairs":[130],"do":[132],"explore":[134],"larger":[135],"categories.":[139],"To":[140],"overcome":[141],"these":[142],"limitations,":[143],"we":[144],"propose":[145],"Spatial-interaction":[147],"Aware":[148],"Multi-Category":[149],"Network":[152],"(SAMCNet)":[153],"architecture":[154,183],"contribute":[156],"novel":[157],"local":[158],"reference":[159],"frame":[160],"characterization":[161],"pair":[164],"prioritization":[165],"layers":[166],"classification.":[170],"Experimental":[171],"results":[172],"multiple":[174],"datasets":[176],"MxIF)":[178],"show":[179],"that":[180,196,202],"proposed":[182,198],"provides":[184],"higher":[185],"prediction":[186],"accuracy":[187],"over":[188],"baseline":[189],"methods.":[190],"A":[191],"real-world":[192],"case":[193],"study":[194],"demonstrates":[195],"work":[199],"discovers":[200],"patterns":[201],"missed":[204],"by":[205],"existing":[207],"methods":[208],"has":[210],"potential":[212],"inspire":[214],"scientific":[216],"discoveries.":[217]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
