{"id":"https://openalex.org/W4225270742","doi":"https://doi.org/10.1145/3529538.3529688","title":"Towards a Portable Drug Discovery Pipeline with SYCL 2020","display_name":"Towards a Portable Drug Discovery Pipeline with SYCL 2020","publication_year":2022,"publication_date":"2022-05-02","ids":{"openalex":"https://openalex.org/W4225270742","doi":"https://doi.org/10.1145/3529538.3529688"},"language":"en","primary_location":{"id":"doi:10.1145/3529538.3529688","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3529538.3529688","pdf_url":null,"source":{"id":"https://openalex.org/S4306420323","display_name":"International Workshop on OpenCL","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Workshop on OpenCL","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085033505","display_name":"Luigi Crisci","orcid":"https://orcid.org/0000-0002-6095-1321"},"institutions":[{"id":"https://openalex.org/I131729948","display_name":"University of Salerno","ror":"https://ror.org/0192m2k53","country_code":"IT","type":"education","lineage":["https://openalex.org/I131729948"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Luigi Crisci","raw_affiliation_strings":["University of Salerno, Italy"],"affiliations":[{"raw_affiliation_string":"University of Salerno, Italy","institution_ids":["https://openalex.org/I131729948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080448779","display_name":"Majid Salimi Beni","orcid":"https://orcid.org/0000-0002-8634-7712"},"institutions":[{"id":"https://openalex.org/I131729948","display_name":"University of Salerno","ror":"https://ror.org/0192m2k53","country_code":"IT","type":"education","lineage":["https://openalex.org/I131729948"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Majid Salimi Beni","raw_affiliation_strings":["University of Salerno, Italy"],"affiliations":[{"raw_affiliation_string":"University of Salerno, Italy","institution_ids":["https://openalex.org/I131729948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031619277","display_name":"Biagio Cosenza","orcid":"https://orcid.org/0000-0002-8869-6705"},"institutions":[{"id":"https://openalex.org/I131729948","display_name":"University of Salerno","ror":"https://ror.org/0192m2k53","country_code":"IT","type":"education","lineage":["https://openalex.org/I131729948"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Biagio Cosenza","raw_affiliation_strings":["University of Salerno, Italy"],"affiliations":[{"raw_affiliation_string":"University of Salerno, Italy","institution_ids":["https://openalex.org/I131729948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003771222","display_name":"Nicol\u00f2 Scipione","orcid":null},"institutions":[{"id":"https://openalex.org/I93860229","display_name":"Politecnico di Milano","ror":"https://ror.org/01nffqt88","country_code":"IT","type":"education","lineage":["https://openalex.org/I93860229"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Nicol\u00f2 Scipione","raw_affiliation_strings":["Politecnico di Milano, Italy"],"affiliations":[{"raw_affiliation_string":"Politecnico di Milano, Italy","institution_ids":["https://openalex.org/I93860229"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059293847","display_name":"Davide Gadioli","orcid":"https://orcid.org/0000-0002-0143-0737"},"institutions":[{"id":"https://openalex.org/I93860229","display_name":"Politecnico di Milano","ror":"https://ror.org/01nffqt88","country_code":"IT","type":"education","lineage":["https://openalex.org/I93860229"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Davide Gadioli","raw_affiliation_strings":["Politecnico di Milano, Italy"],"affiliations":[{"raw_affiliation_string":"Politecnico di Milano, Italy","institution_ids":["https://openalex.org/I93860229"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045006433","display_name":"Emanuele Vitali","orcid":"https://orcid.org/0000-0001-8629-2099"},"institutions":[{"id":"https://openalex.org/I93860229","display_name":"Politecnico di Milano","ror":"https://ror.org/01nffqt88","country_code":"IT","type":"education","lineage":["https://openalex.org/I93860229"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Emanuele Vitali","raw_affiliation_strings":["Politecnico di Milano, Italy"],"affiliations":[{"raw_affiliation_string":"Politecnico di Milano, Italy","institution_ids":["https://openalex.org/I93860229"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077005193","display_name":"Gianluca Palermo","orcid":"https://orcid.org/0000-0001-7955-8012"},"institutions":[{"id":"https://openalex.org/I93860229","display_name":"Politecnico di Milano","ror":"https://ror.org/01nffqt88","country_code":"IT","type":"education","lineage":["https://openalex.org/I93860229"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Gianluca Palermo","raw_affiliation_strings":["Politecnico di Milano, Italy"],"affiliations":[{"raw_affiliation_string":"Politecnico di Milano, Italy","institution_ids":["https://openalex.org/I93860229"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032283822","display_name":"Andrea R. Beccari","orcid":"https://orcid.org/0000-0001-6830-2695"},"institutions":[{"id":"https://openalex.org/I4210140932","display_name":"Domp\u00e9 (Italy)","ror":"https://ror.org/04erezm33","country_code":"IT","type":"company","lineage":["https://openalex.org/I4210140932"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Andrea Beccari","raw_affiliation_strings":["Domp\u00e9 Farmaceutici S.p.A., Italy"],"affiliations":[{"raw_affiliation_string":"Domp\u00e9 Farmaceutici S.p.A., Italy","institution_ids":["https://openalex.org/I4210140932"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5085033505"],"corresponding_institution_ids":["https://openalex.org/I131729948"],"apc_list":null,"apc_paid":null,"fwci":1.3067,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.77569331,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"2"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9814000129699707,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9769999980926514,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.8084264993667603},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.7341150045394897},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6913766860961914},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.666650652885437},{"id":"https://openalex.org/keywords/dock","display_name":"DOCK","score":0.5494368672370911},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.49431610107421875},{"id":"https://openalex.org/keywords/cuda","display_name":"CUDA","score":0.4834621846675873},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.4710400402545929},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.43115493655204773},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.272980272769928},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.19728899002075195},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.17483362555503845},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1699334979057312},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.15743494033813477},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.08461081981658936}],"concepts":[{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.8084264993667603},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.7341150045394897},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6913766860961914},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.666650652885437},{"id":"https://openalex.org/C93073132","wikidata":"https://www.wikidata.org/wiki/Q24726581","display_name":"DOCK","level":2,"score":0.5494368672370911},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.49431610107421875},{"id":"https://openalex.org/C2778119891","wikidata":"https://www.wikidata.org/wiki/Q477690","display_name":"CUDA","level":2,"score":0.4834621846675873},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.4710400402545929},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.43115493655204773},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.272980272769928},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.19728899002075195},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.17483362555503845},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1699334979057312},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.15743494033813477},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.08461081981658936},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3529538.3529688","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3529538.3529688","pdf_url":null,"source":{"id":"https://openalex.org/S4306420323","display_name":"International Workshop on OpenCL","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Workshop on OpenCL","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.7099999785423279}],"awards":[{"id":"https://openalex.org/G4155013421","display_name":null,"funder_award_id":"956137","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4956428346","display_name":null,"funder_award_id":"Horizon 2020 research and innovatio","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5036817778","display_name":null,"funder_award_id":"European Union's Horizon 2020 research and innov","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8318064016","display_name":null,"funder_award_id":"Horizon","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8633428685","display_name":null,"funder_award_id":"European Union's Horizon 2020 research and innovat","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":5,"referenced_works":["https://openalex.org/W2002042437","https://openalex.org/W2094385413","https://openalex.org/W2578119541","https://openalex.org/W2944425327","https://openalex.org/W3023570844"],"related_works":["https://openalex.org/W4393853640","https://openalex.org/W4282913408","https://openalex.org/W2100436540","https://openalex.org/W2300502530","https://openalex.org/W3201417569","https://openalex.org/W3174709249","https://openalex.org/W2070163817","https://openalex.org/W2395175315","https://openalex.org/W1938743025","https://openalex.org/W2102475066"],"abstract_inverted_index":{"The":[0,27,132],"outcome":[1],"of":[2,32,36,82,99,119],"the":[3,15,33,37,80,90,97,117,123],"drug":[4],"discovery":[5,118],"process":[6,38],"is":[7,30],"a":[8,21,58,64,75,85,104],"molecule":[9],"that":[10,78],"has":[11,113],"strong":[12],"interaction":[13,91],"with":[14],"target":[16],"protein.":[17],"Domain":[18],"experts":[19],"expect":[20],"beneficial":[22],"effect":[23],"from":[24],"this":[25,53],"interaction.":[26],"virtual":[28],"screening":[29],"one":[31],"early":[34],"stages":[35],"and":[39,84,128,141],"it":[40],"aims":[41],"at":[42],"finding":[43],"promising":[44],"molecules":[45],"to":[46,48,56,148],"forward":[47],"later":[49],"stages.":[50],"We":[51],"perform":[52],"task":[54],"in-silico":[55],"evaluate":[57],"very":[59],"large":[60],"chemical":[61],"library":[62],"in":[63,122,145],"short":[65],"time":[66],"frame.":[67],"This":[68],"activity":[69],"typically":[70],"comprises":[71],"two":[72,137],"compute-intensive":[73],"tasks:":[74],"docking":[76,106],"function":[77],"predicts":[79],"displacement":[81],"atoms,":[83],"scoring":[86],"function,":[87],"which":[88],"estimates":[89],"strength":[92],"[6]":[93],"Domp\u00e9":[94],"Farmaceutici":[95],"led":[96],"development":[98],"LiGen":[100,112,133],"[1,":[101],"2,":[102],"3],":[103],"molecular":[105],"platform":[107],"targeting":[108],"High-Performance":[109],"Computing":[110],"systems.":[111],"been":[114],"used":[115],"for":[116],"novel":[120],"treatments":[121],"fight":[124],"against":[125],"viral":[126],"infections":[127],"multidrug-resistant":[129],"bacteria":[130],"[4].":[131],"processing":[134],"pipeline":[135],"includes":[136],"main":[138],"components,":[139],"ligen-dock":[140],"ligen-score,":[142],"originally":[143],"developed":[144],"OpenACC,":[146],"refactored":[147],"CUDA":[149],"using":[150],"non-portable":[151],"target-specific":[152],"optimizations":[153],"[7].":[154]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2}],"updated_date":"2026-03-11T14:59:36.786465","created_date":"2025-10-10T00:00:00"}
