{"id":"https://openalex.org/W4280536779","doi":"https://doi.org/10.1145/3524059.3532376","title":"AnySeq/GPU","display_name":"AnySeq/GPU","publication_year":2022,"publication_date":"2022-06-16","ids":{"openalex":"https://openalex.org/W4280536779","doi":"https://doi.org/10.1145/3524059.3532376"},"language":"en","primary_location":{"id":"doi:10.1145/3524059.3532376","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3524059.3532376","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 36th ACM International Conference on Supercomputing","raw_type":"proceedings-article"},"type":"preprint","indexed_in":["arxiv","crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2205.07610","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5107834032","display_name":"Andr\u00e9 C. M\u00fcller","orcid":"https://orcid.org/0000-0002-0608-8176"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Andr\u00e9 M\u00fcller","raw_affiliation_strings":["Johannes Gutenberg University, Mainz, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Johannes Gutenberg University, Mainz, Germany","institution_ids":["https://openalex.org/I197323543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020388832","display_name":"Bertil Schmidt","orcid":"https://orcid.org/0000-0003-2597-8331"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Bertil Schmidt","raw_affiliation_strings":["Johannes Gutenberg University, Mainz, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Johannes Gutenberg University, Mainz, Germany","institution_ids":["https://openalex.org/I197323543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024954324","display_name":"Richard Membarth","orcid":"https://orcid.org/0000-0002-9979-7579"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Richard Membarth","raw_affiliation_strings":["Research Institute AImotion Bavaria, Ingolstadt, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Institute AImotion Bavaria, Ingolstadt, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002266283","display_name":"Roland Lei\u00dfa","orcid":"https://orcid.org/0000-0002-2444-6782"},"institutions":[{"id":"https://openalex.org/I177802217","display_name":"University of Mannheim","ror":"https://ror.org/031bsb921","country_code":"DE","type":"education","lineage":["https://openalex.org/I177802217"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Roland Lei\u00dfa","raw_affiliation_strings":["University of Mannheim, Mannheim, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Mannheim, Mannheim, Germany","institution_ids":["https://openalex.org/I177802217"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018809145","display_name":"Sebastian Hack","orcid":"https://orcid.org/0000-0002-3387-2134"},"institutions":[{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sebastian Hack","raw_affiliation_strings":["Saarland University, Saarbr\u00fccken, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Saarland University, Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I91712215"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.9233,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.71825883,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"11"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9790999889373779,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9688000082969666,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8573614358901978},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.7966024279594421},{"id":"https://openalex.org/keywords/speedup","display_name":"Speedup","score":0.7140734195709229},{"id":"https://openalex.org/keywords/cuda","display_name":"CUDA","score":0.6039927005767822},{"id":"https://openalex.org/keywords/general-purpose-computing-on-graphics-processing-units","display_name":"General-purpose computing on graphics processing units","score":0.5942259430885315},{"id":"https://openalex.org/keywords/compiler","display_name":"Compiler","score":0.590835690498352},{"id":"https://openalex.org/keywords/leverage","display_name":"Leverage (statistics)","score":0.5441246628761292},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5187347531318665},{"id":"https://openalex.org/keywords/massively-parallel","display_name":"Massively parallel","score":0.4678896963596344},{"id":"https://openalex.org/keywords/implementation","display_name":"Implementation","score":0.443087100982666},{"id":"https://openalex.org/keywords/dynamic-programming","display_name":"Dynamic programming","score":0.41750502586364746},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.22487005591392517},{"id":"https://openalex.org/keywords/graphics","display_name":"Graphics","score":0.18905264139175415},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.17552605271339417},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.1499197781085968},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.10455447435379028}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8573614358901978},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.7966024279594421},{"id":"https://openalex.org/C68339613","wikidata":"https://www.wikidata.org/wiki/Q1549489","display_name":"Speedup","level":2,"score":0.7140734195709229},{"id":"https://openalex.org/C2778119891","wikidata":"https://www.wikidata.org/wiki/Q477690","display_name":"CUDA","level":2,"score":0.6039927005767822},{"id":"https://openalex.org/C50630238","wikidata":"https://www.wikidata.org/wiki/Q971505","display_name":"General-purpose computing on graphics processing units","level":3,"score":0.5942259430885315},{"id":"https://openalex.org/C169590947","wikidata":"https://www.wikidata.org/wiki/Q47506","display_name":"Compiler","level":2,"score":0.590835690498352},{"id":"https://openalex.org/C153083717","wikidata":"https://www.wikidata.org/wiki/Q6535263","display_name":"Leverage (statistics)","level":2,"score":0.5441246628761292},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5187347531318665},{"id":"https://openalex.org/C190475519","wikidata":"https://www.wikidata.org/wiki/Q544384","display_name":"Massively parallel","level":2,"score":0.4678896963596344},{"id":"https://openalex.org/C26713055","wikidata":"https://www.wikidata.org/wiki/Q245962","display_name":"Implementation","level":2,"score":0.443087100982666},{"id":"https://openalex.org/C37404715","wikidata":"https://www.wikidata.org/wiki/Q380679","display_name":"Dynamic programming","level":2,"score":0.41750502586364746},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.22487005591392517},{"id":"https://openalex.org/C21442007","wikidata":"https://www.wikidata.org/wiki/Q1027879","display_name":"Graphics","level":2,"score":0.18905264139175415},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.17552605271339417},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.1499197781085968},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.10455447435379028},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1145/3524059.3532376","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3524059.3532376","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 36th ACM International Conference on Supercomputing","raw_type":"proceedings-article"},{"id":"pmh:oai:arXiv.org:2205.07610","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2205.07610","pdf_url":"https://arxiv.org/pdf/2205.07610","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:ub-madoc.bib.uni-mannheim.de:66359","is_oa":false,"landing_page_url":"https://madoc.bib.uni-mannheim.de/66359/","pdf_url":null,"source":{"id":"https://openalex.org/S4377196315","display_name":"MADOC (University of Mannheim)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I177802217","host_organization_name":"University of Mannheim","host_organization_lineage":["https://openalex.org/I177802217"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Konferenzver\u00f6ffentlichung"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2205.07610","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2205.07610","pdf_url":"https://arxiv.org/pdf/2205.07610","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W1595243393","https://openalex.org/W1912157869","https://openalex.org/W2006899413","https://openalex.org/W2021342241","https://openalex.org/W2023226967","https://openalex.org/W2065461987","https://openalex.org/W2066852475","https://openalex.org/W2074231493","https://openalex.org/W2087064593","https://openalex.org/W2096189519","https://openalex.org/W2098232690","https://openalex.org/W2116715773","https://openalex.org/W2116981323","https://openalex.org/W2165654401","https://openalex.org/W2260037449","https://openalex.org/W2283942397","https://openalex.org/W2344543892","https://openalex.org/W2506072259","https://openalex.org/W2572804059","https://openalex.org/W2725215886","https://openalex.org/W2799394118","https://openalex.org/W2885840893","https://openalex.org/W2896791670","https://openalex.org/W2898442528","https://openalex.org/W2900776157","https://openalex.org/W2949526239","https://openalex.org/W2960965208","https://openalex.org/W2981619930","https://openalex.org/W3042796137","https://openalex.org/W3084730237"],"related_works":["https://openalex.org/W2983282793","https://openalex.org/W1973046741","https://openalex.org/W1963859303","https://openalex.org/W2364044215","https://openalex.org/W2056543843","https://openalex.org/W2389600408","https://openalex.org/W240129890","https://openalex.org/W3048701459","https://openalex.org/W2149078538","https://openalex.org/W2370314112"],"abstract_inverted_index":{"In":[0],"recent":[1],"years,":[2],"the":[3,17,36],"rapidly":[4],"increasing":[5],"number":[6],"of":[7,22,41],"reads":[8],"produced":[9],"by":[10],"next-generation":[11],"sequencing":[12],"(NGS)":[13],"technologies":[14],"has":[15],"driven":[16],"demand":[18],"for":[19],"efficient":[20],"implementations":[21],"sequence":[23],"alignments":[24],"in":[25],"bioinformatics.":[26],"However,":[27],"current":[28],"state-of-the-art":[29],"approaches":[30],"are":[31],"not":[32],"able":[33],"to":[34],"leverage":[35],"massively":[37],"parallel":[38],"processing":[39],"capabilities":[40],"modern":[42],"GPUs":[43],"with":[44],"close-to-peak":[45],"performance.":[46]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":2}],"updated_date":"2026-07-11T18:08:03.149640","created_date":"2022-05-22T00:00:00"}
