{"id":"https://openalex.org/W4284965355","doi":"https://doi.org/10.1145/3491418.3535161","title":"ScriptManager: an interactive platform for reducing barriers to genomics analysis","display_name":"ScriptManager: an interactive platform for reducing barriers to genomics analysis","publication_year":2022,"publication_date":"2022-07-08","ids":{"openalex":"https://openalex.org/W4284965355","doi":"https://doi.org/10.1145/3491418.3535161"},"language":"en","primary_location":{"id":"doi:10.1145/3491418.3535161","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3491418.3535161","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3491418.3535161","source":{"id":"https://openalex.org/S4306523034","display_name":"Practice and Experience in Advanced Research Computing","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Practice and Experience in Advanced Research Computing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://dl.acm.org/doi/pdf/10.1145/3491418.3535161","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041492072","display_name":"Olivia Lang","orcid":"https://orcid.org/0000-0002-5886-363X"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Olivia Lang","raw_affiliation_strings":["Computational Biology, Cornell University, USA"],"affiliations":[{"raw_affiliation_string":"Computational Biology, Cornell University, USA","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046527896","display_name":"B. Franklin Pugh","orcid":"https://orcid.org/0000-0001-8341-4476"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"B Franklin Pugh","raw_affiliation_strings":["Molecular Biology and Genetics, Cornell University, USA"],"affiliations":[{"raw_affiliation_string":"Molecular Biology and Genetics, Cornell University, USA","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5000405432","display_name":"William Lai","orcid":"https://orcid.org/0000-0003-4351-7037"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William KM Lai","raw_affiliation_strings":["Computational Biology, Cornell University, USA"],"affiliations":[{"raw_affiliation_string":"Computational Biology, Cornell University, USA","institution_ids":["https://openalex.org/I205783295"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5041492072"],"corresponding_institution_ids":["https://openalex.org/I205783295"],"apc_list":null,"apc_paid":null,"fwci":0.9291,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.87151798,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9896000027656555,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9848999977111816,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8337546586990356},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7685189843177795},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.6490631103515625},{"id":"https://openalex.org/keywords/leverage","display_name":"Leverage (statistics)","score":0.5966396927833557},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5507171154022217},{"id":"https://openalex.org/keywords/supercomputer","display_name":"Supercomputer","score":0.5238276124000549},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.4867992103099823},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.43782609701156616},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.42296987771987915},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.35575634241104126},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3493805527687073},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.26368439197540283}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8337546586990356},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7685189843177795},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.6490631103515625},{"id":"https://openalex.org/C153083717","wikidata":"https://www.wikidata.org/wiki/Q6535263","display_name":"Leverage (statistics)","level":2,"score":0.5966396927833557},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5507171154022217},{"id":"https://openalex.org/C83283714","wikidata":"https://www.wikidata.org/wiki/Q121117","display_name":"Supercomputer","level":2,"score":0.5238276124000549},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.4867992103099823},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.43782609701156616},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.42296987771987915},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.35575634241104126},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3493805527687073},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.26368439197540283},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3491418.3535161","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3491418.3535161","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3491418.3535161","source":{"id":"https://openalex.org/S4306523034","display_name":"Practice and Experience in Advanced Research Computing","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Practice and Experience in Advanced Research Computing","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.1145/3491418.3535161","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3491418.3535161","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3491418.3535161","source":{"id":"https://openalex.org/S4306523034","display_name":"Practice and Experience in Advanced Research Computing","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Practice and Experience in Advanced Research Computing","raw_type":"proceedings-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.6100000143051147,"display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G3497591915","display_name":null,"funder_award_id":"(NIH)","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5924513389","display_name":null,"funder_award_id":"HG004160","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4284965355.pdf"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W1985567287","https://openalex.org/W2043701535","https://openalex.org/W2097464861","https://openalex.org/W2103441770","https://openalex.org/W2124088880","https://openalex.org/W2512201206","https://openalex.org/W2625231465","https://openalex.org/W2883594174","https://openalex.org/W2906318444","https://openalex.org/W2917207851","https://openalex.org/W2947060454","https://openalex.org/W3131443014"],"related_works":["https://openalex.org/W2389372035","https://openalex.org/W4294078452","https://openalex.org/W1864903763","https://openalex.org/W2083578082","https://openalex.org/W2349300438","https://openalex.org/W2610550630","https://openalex.org/W3149566383","https://openalex.org/W1988856717","https://openalex.org/W2915769286","https://openalex.org/W2004521465"],"abstract_inverted_index":{"ScriptManager":[0],"was":[1],"built":[2],"to":[3,9,70,95,102],"be":[4,109],"a":[5,20,33,50,63],"lightweight":[6],"and":[7,28,39,74,99,118],"easy":[8,24],"use":[10],"genomics":[11,89],"analysis":[12],"tool":[13,86],"for":[14,23,37,79],"novice":[15],"bioinformaticians.":[16],"It":[17],"includes":[18],"both":[19],"graphical":[21,64],"interface":[22,36,66],"navigation":[25],"of":[26,84],"inputs":[27],"options":[29],"while":[30],"also":[31],"supporting":[32],"command":[34,55],"line":[35,56],"automation":[38],"integration":[40],"with":[41,53],"workflow":[42],"managers":[43],"like":[44,67],"Galaxy.":[45],"We":[46],"describe":[47],"here":[48],"how":[49],"user":[51],"unfamiliar":[52],"the":[54,88],"can":[57,108],"leverage":[58],"national":[59],"supercomputing":[60,97],"resources":[61,98],"using":[62],"desktop":[65],"Open":[68],"OnDemand":[69],"perform":[71],"their":[72,80,104],"analyses":[73],"generate":[75],"publication":[76],"quality":[77],"figures":[78],"research.":[81],"Widespread":[82],"adoption":[83],"this":[85],"in":[87],"community":[90],"would":[91],"lower":[92],"technical":[93],"barriers":[94],"accessing":[96],"allow":[100],"biochemists":[101],"prototype":[103],"own":[105],"workflows":[106],"that":[107],"integrated":[110],"into":[111],"large":[112],"scale":[113],"production":[114],"pipelines.":[115],"Source":[116],"code":[117],"precompiled":[119],"binaries":[120],"available":[121],"at":[122],"https://github.com/CEGRcode/scriptmanager.":[123]},"counts_by_year":[{"year":2025,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
