{"id":"https://openalex.org/W4284958466","doi":"https://doi.org/10.1145/3491418.3535152","title":"BioContainers on Purdue Clusters","display_name":"BioContainers on Purdue Clusters","publication_year":2022,"publication_date":"2022-07-08","ids":{"openalex":"https://openalex.org/W4284958466","doi":"https://doi.org/10.1145/3491418.3535152"},"language":"en","primary_location":{"id":"doi:10.1145/3491418.3535152","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3491418.3535152","pdf_url":null,"source":{"id":"https://openalex.org/S4306523034","display_name":"Practice and Experience in Advanced Research Computing","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Practice and Experience in Advanced Research Computing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100387028","display_name":"Yucheng Zhang","orcid":"https://orcid.org/0000-0001-9435-6734"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yucheng Zhang","raw_affiliation_strings":["Research Computing, Purdue University, USA"],"affiliations":[{"raw_affiliation_string":"Research Computing, Purdue University, USA","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086503393","display_name":"Lev Gorenstein","orcid":"https://orcid.org/0000-0003-1877-009X"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lev Gorenstein","raw_affiliation_strings":["Research Computing, Purdue University, USA"],"affiliations":[{"raw_affiliation_string":"Research Computing, Purdue University, USA","institution_ids":["https://openalex.org/I219193219"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5100387028"],"corresponding_institution_ids":["https://openalex.org/I219193219"],"apc_list":null,"apc_paid":null,"fwci":1.2715,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.88730478,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"2"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9828000068664551,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/software-portability","display_name":"Software portability","score":0.8835484981536865},{"id":"https://openalex.org/keywords/container","display_name":"Container (type theory)","score":0.8503026962280273},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8223296403884888},{"id":"https://openalex.org/keywords/software-deployment","display_name":"Software deployment","score":0.7158033847808838},{"id":"https://openalex.org/keywords/supercomputer","display_name":"Supercomputer","score":0.5965408086776733},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.5842876434326172},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.571422815322876},{"id":"https://openalex.org/keywords/compiler","display_name":"Compiler","score":0.5252051949501038},{"id":"https://openalex.org/keywords/popularity","display_name":"Popularity","score":0.46091488003730774},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.33861044049263},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.06584116816520691}],"concepts":[{"id":"https://openalex.org/C63000827","wikidata":"https://www.wikidata.org/wiki/Q3080428","display_name":"Software portability","level":2,"score":0.8835484981536865},{"id":"https://openalex.org/C2781018962","wikidata":"https://www.wikidata.org/wiki/Q5164884","display_name":"Container (type theory)","level":2,"score":0.8503026962280273},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8223296403884888},{"id":"https://openalex.org/C105339364","wikidata":"https://www.wikidata.org/wiki/Q2297740","display_name":"Software deployment","level":2,"score":0.7158033847808838},{"id":"https://openalex.org/C83283714","wikidata":"https://www.wikidata.org/wiki/Q121117","display_name":"Supercomputer","level":2,"score":0.5965408086776733},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.5842876434326172},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.571422815322876},{"id":"https://openalex.org/C169590947","wikidata":"https://www.wikidata.org/wiki/Q47506","display_name":"Compiler","level":2,"score":0.5252051949501038},{"id":"https://openalex.org/C2780586970","wikidata":"https://www.wikidata.org/wiki/Q1357284","display_name":"Popularity","level":2,"score":0.46091488003730774},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.33861044049263},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.06584116816520691},{"id":"https://openalex.org/C77805123","wikidata":"https://www.wikidata.org/wiki/Q161272","display_name":"Social psychology","level":1,"score":0.0},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3491418.3535152","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3491418.3535152","pdf_url":null,"source":{"id":"https://openalex.org/S4306523034","display_name":"Practice and Experience in Advanced Research Computing","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Practice and Experience in Advanced Research Computing","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/12","display_name":"Responsible consumption and production","score":0.4399999976158142}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":3,"referenced_works":["https://openalex.org/W2172171827","https://openalex.org/W2604622795","https://openalex.org/W2613409207"],"related_works":["https://openalex.org/W2368605798","https://openalex.org/W1584537303","https://openalex.org/W2750549761","https://openalex.org/W2348524959","https://openalex.org/W2518037665","https://openalex.org/W28826848","https://openalex.org/W2122272819","https://openalex.org/W4367156293","https://openalex.org/W2128640905","https://openalex.org/W2011460173"],"abstract_inverted_index":{"Container":[0],"technologies":[1],"such":[2,35],"as":[3,36,61,132,134],"Docker,":[4],"Kubernetes,":[5],"and":[6,39,121,140],"SingularityCE":[7,94,104],"have":[8,96,124],"been":[9,97,125],"receiving":[10],"an":[11,25],"increasing":[12],"level":[13],"of":[14,50,84,119],"attention":[15],"in":[16,53,127],"academic":[17],"institutions.":[18],"Containers":[19],"wrap":[20],"up":[21],"the":[22,47,51,81,110,117],"application":[23],"into":[24],"isolated":[26],"file":[27],"system":[28],"containing":[29],"everything":[30],"it":[31],"needs":[32],"to":[33,44,108,116],"run,":[34],"compiler,":[37],"libraries":[38],"dependencies.":[40],"This":[41],"enables":[42],"containers":[43,73,95,105],"always":[45],"run":[46],"same,":[48],"regardless":[49],"environment":[52,143],"which":[54],"they":[55,77],"are":[56,106],"running,":[57],"promoting":[58],"container":[59],"technology":[60],"a":[62,138],"critical":[63],"tool":[64,112],"for":[65,144],"reproducible":[66,141],"research.":[67],"In":[68],"high-performance":[69],"computing":[70,142],"(HPC)":[71],"context,":[72],"gain":[74],"popularity":[75],"because":[76],"can":[78],"significantly":[79],"reduce":[80],"administrators\u2019":[82],"work":[83],"deploying":[85],"applications.":[86],"On":[87],"Purdue":[88],"University":[89],"HPC":[90,130],"clusters,":[91],"several":[92],"hundred":[93],"deployed.":[98],"Here,":[99],"we":[100],"will":[101],"introduce":[102],"how":[103],"used":[107],"create":[109],"bioinformatic":[111],"collection":[113],"(biocontainers).":[114],"Due":[115],"ease":[118],"deployment":[120],"portability,":[122],"biocontainers":[123],"deployed":[126],"Purdue\u2019s":[128],"6":[129],"clusters":[131],"well":[133],"XSEDE":[135],"Anvil,":[136],"providing":[137],"reliable":[139],"life":[145],"science":[146],"researchers.":[147]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
