{"id":"https://openalex.org/W4284975894","doi":"https://doi.org/10.1145/3491418.3535149","title":"Migrating a Pipeline for the C-M\u0100IKI gateway from Tapis v2 to Tapis v3","display_name":"Migrating a Pipeline for the C-M\u0100IKI gateway from Tapis v2 to Tapis v3","publication_year":2022,"publication_date":"2022-07-08","ids":{"openalex":"https://openalex.org/W4284975894","doi":"https://doi.org/10.1145/3491418.3535149"},"language":"en","primary_location":{"id":"doi:10.1145/3491418.3535149","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3491418.3535149","pdf_url":null,"source":{"id":"https://openalex.org/S4306523034","display_name":"Practice and Experience in Advanced Research Computing","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Practice and Experience in Advanced Research Computing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029402989","display_name":"Yick Ching Wong","orcid":"https://orcid.org/0000-0002-3837-461X"},"institutions":[{"id":"https://openalex.org/I117965899","display_name":"University of Hawai\u02bbi at M\u0101noa","ror":"https://ror.org/01wspgy28","country_code":"US","type":"education","lineage":["https://openalex.org/I117965899"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yick Ching Wong","raw_affiliation_strings":["University of Hawaii At Manoa, USA"],"affiliations":[{"raw_affiliation_string":"University of Hawaii At Manoa, USA","institution_ids":["https://openalex.org/I117965899"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080587331","display_name":"Sean B. Cleveland","orcid":"https://orcid.org/0000-0002-7130-3434"},"institutions":[{"id":"https://openalex.org/I1331384533","display_name":"University of Hawaii System","ror":"https://ror.org/03tzaeb71","country_code":"US","type":"education","lineage":["https://openalex.org/I1331384533"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sean Cleveland","raw_affiliation_strings":["University of Hawaii, USA"],"affiliations":[{"raw_affiliation_string":"University of Hawaii, USA","institution_ids":["https://openalex.org/I1331384533"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090961587","display_name":"Gwen A. Jacobs","orcid":"https://orcid.org/0000-0002-9925-6916"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gwen A. Jacobs","raw_affiliation_strings":["gwenjh@hawaii.edu, USA"],"affiliations":[{"raw_affiliation_string":"gwenjh@hawaii.edu, USA","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5029402989"],"corresponding_institution_ids":["https://openalex.org/I117965899"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.05968373,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"1"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9352999925613403,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6905517578125},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6436544060707092},{"id":"https://openalex.org/keywords/gateway","display_name":"Gateway (web page)","score":0.5830028057098389},{"id":"https://openalex.org/keywords/leverage","display_name":"Leverage (statistics)","score":0.5270978212356567},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5138493180274963},{"id":"https://openalex.org/keywords/linux-kernel","display_name":"Linux kernel","score":0.4555037021636963},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.4429866373538971},{"id":"https://openalex.org/keywords/computer-cluster","display_name":"Computer cluster","score":0.42100659012794495},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.41545575857162476},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.21370390057563782},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.11464980244636536}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6905517578125},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6436544060707092},{"id":"https://openalex.org/C2777710495","wikidata":"https://www.wikidata.org/wiki/Q5527195","display_name":"Gateway (web page)","level":2,"score":0.5830028057098389},{"id":"https://openalex.org/C153083717","wikidata":"https://www.wikidata.org/wiki/Q6535263","display_name":"Leverage (statistics)","level":2,"score":0.5270978212356567},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5138493180274963},{"id":"https://openalex.org/C553261973","wikidata":"https://www.wikidata.org/wiki/Q14579","display_name":"Linux kernel","level":2,"score":0.4555037021636963},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.4429866373538971},{"id":"https://openalex.org/C29140674","wikidata":"https://www.wikidata.org/wiki/Q206637","display_name":"Computer cluster","level":2,"score":0.42100659012794495},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.41545575857162476},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.21370390057563782},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.11464980244636536}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3491418.3535149","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3491418.3535149","pdf_url":null,"source":{"id":"https://openalex.org/S4306523034","display_name":"Practice and Experience in Advanced Research Computing","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Practice and Experience in Advanced Research Computing","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.6499999761581421}],"awards":[{"id":"https://openalex.org/G3769687137","display_name":null,"funder_award_id":"1931575,1931439, 557349, 1636402","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":1,"referenced_works":["https://openalex.org/W3156001951"],"related_works":["https://openalex.org/W2371792015","https://openalex.org/W2369088478","https://openalex.org/W2388929119","https://openalex.org/W2314153063","https://openalex.org/W2380241064","https://openalex.org/W1581434145","https://openalex.org/W600313189","https://openalex.org/W1570068824","https://openalex.org/W1999737716","https://openalex.org/W2200979091"],"abstract_inverted_index":{"The":[0],"<Url":[1],"href=\"https://cmaiki.its.hawaii.edu/\">C-M\u0100IKI":[2],"science":[3],"gateway</Url>":[4],"allows":[5],"researchers":[6],"to":[7,83,101,140,143,160,175],"run":[8,161],"microbial":[9],"workflows":[10],"on":[11],"a":[12,17,20,53,71,115,129,144,149,165,168,177],"computer":[13],"cluster":[14],"with":[15,108],"just":[16],"click":[18],"of":[19,26,46,110],"button.":[21],"This":[22,80,152],"is":[23,58,158],"possible":[24,159],"because":[25],"the":[27,32,39,43,85,93,96,102,111,134,138,173],"Tapis[1]":[28],"framework":[29,100,106],"developed":[30],"at":[31],"Texas":[33],"Advanced":[34],"Computing":[35],"Center":[36],"(TACC).":[37],"Currently,":[38],"C-M\u0100IKI":[40,86],"gateway":[41,87,94],"uses":[42],"v2":[44,99],"version":[45,56],"Tapis,":[47],"which":[48,117],"has":[49,62],"been":[50],"refactored":[51],"into":[52],"new":[54,72,103,130],"v3":[55,105],"that":[57,156,183],"more":[59],"robust":[60],"and":[61,76,89],"added":[63],"capabilities":[64],"such":[65],"as":[66,114,164],"support":[67],"for":[68,133,170],"containerized":[69],"apps,":[70],"Streaming":[73],"Data":[74],"API,":[75],"multi-site":[77],"security":[78],"kernel.":[79],"project":[81],"aims":[82],"keep":[84],"up-to-date":[88],"modern":[90],"by":[91],"migrating":[92],"from":[95,147],"pre-existing":[97],"Tapis":[98,104,182],"starting":[107],"one":[109],"pipelines":[112,163],"applications":[113],"pilot":[116,154],"required":[118],"three":[119],"major":[120],"steps:":[121],"1)":[122],"Containerizing":[123],"an":[124],"microbiome":[125],"pipeline.":[126],"2)":[127],"Developing":[128],"app":[131],"definition":[132,180],"workflow.":[135],"3)":[136],"Enabling":[137],"ability":[139,174],"submit":[141],"jobs":[142],"SLURM":[145],"scheduler":[146],"inside":[148],"singularity":[150],"container.":[151],"initial":[153],"illustrates":[155],"it":[157],"these":[162],"\u201dcontainer":[166],"within":[167],"container\u201d":[169],"parallelization":[171],"providing":[172],"leverage":[176],"single":[178],"application":[179],"in":[181],"can":[184],"execute":[185],"across":[186],"multiple":[187],"compute":[188],"infrastructures.":[189]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
