{"id":"https://openalex.org/W4284968532","doi":"https://doi.org/10.1145/3491418.3530291","title":"The C-M\u0100IKI Gateway: A Modern Science Platform for Analyzing Microbiome Data","display_name":"The C-M\u0100IKI Gateway: A Modern Science Platform for Analyzing Microbiome Data","publication_year":2022,"publication_date":"2022-07-08","ids":{"openalex":"https://openalex.org/W4284968532","doi":"https://doi.org/10.1145/3491418.3530291"},"language":"en","primary_location":{"id":"doi:10.1145/3491418.3530291","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3491418.3530291","pdf_url":null,"source":{"id":"https://openalex.org/S4306523034","display_name":"Practice and Experience in Advanced Research Computing","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Practice and Experience in Advanced Research Computing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5080587331","display_name":"Sean B. Cleveland","orcid":"https://orcid.org/0000-0002-7130-3434"},"institutions":[{"id":"https://openalex.org/I1331384533","display_name":"University of Hawaii System","ror":"https://ror.org/03tzaeb71","country_code":"US","type":"education","lineage":["https://openalex.org/I1331384533"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Sean Cleveland","raw_affiliation_strings":["Information Technology Services - Cyberinfrastructure, University of Hawaii, USA"],"affiliations":[{"raw_affiliation_string":"Information Technology Services - Cyberinfrastructure, University of Hawaii, USA","institution_ids":["https://openalex.org/I1331384533"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083440317","display_name":"C\u00e9dric Arisdakessian","orcid":"https://orcid.org/0000-0001-5255-0942"},"institutions":[{"id":"https://openalex.org/I117965899","display_name":"University of Hawai\u02bbi at M\u0101noa","ror":"https://ror.org/01wspgy28","country_code":"US","type":"education","lineage":["https://openalex.org/I117965899"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cedric Arisdakessian","raw_affiliation_strings":["Information and Computer Science, University of Hawaii -Manoa, USA"],"affiliations":[{"raw_affiliation_string":"Information and Computer Science, University of Hawaii -Manoa, USA","institution_ids":["https://openalex.org/I117965899"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057578195","display_name":"Craig Nelson","orcid":"https://orcid.org/0000-0003-3548-4167"},"institutions":[{"id":"https://openalex.org/I117965899","display_name":"University of Hawai\u02bbi at M\u0101noa","ror":"https://ror.org/01wspgy28","country_code":"US","type":"education","lineage":["https://openalex.org/I117965899"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Craig Nelson","raw_affiliation_strings":["Hawaii Institute of Marine Biology, University of Hawaii - Manoa, USA"],"affiliations":[{"raw_affiliation_string":"Hawaii Institute of Marine Biology, University of Hawaii - Manoa, USA","institution_ids":["https://openalex.org/I117965899"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035080938","display_name":"Mahdi Belcaid","orcid":"https://orcid.org/0009-0004-5185-0643"},"institutions":[{"id":"https://openalex.org/I117965899","display_name":"University of Hawai\u02bbi at M\u0101noa","ror":"https://ror.org/01wspgy28","country_code":"US","type":"education","lineage":["https://openalex.org/I117965899"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mahdi Belcaid","raw_affiliation_strings":["Information and Computer Sciences, University of Hawaii - Manoa, USA"],"affiliations":[{"raw_affiliation_string":"Information and Computer Sciences, University of Hawaii - Manoa, USA","institution_ids":["https://openalex.org/I117965899"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032958084","display_name":"Kiana L. Frank","orcid":"https://orcid.org/0000-0002-1988-3881"},"institutions":[{"id":"https://openalex.org/I68554272","display_name":"Pacific Biosciences (United States)","ror":"https://ror.org/00fcszb13","country_code":"US","type":"company","lineage":["https://openalex.org/I68554272"]},{"id":"https://openalex.org/I117965899","display_name":"University of Hawai\u02bbi at M\u0101noa","ror":"https://ror.org/01wspgy28","country_code":"US","type":"education","lineage":["https://openalex.org/I117965899"]},{"id":"https://openalex.org/I1331384533","display_name":"University of Hawaii System","ror":"https://ror.org/03tzaeb71","country_code":"US","type":"education","lineage":["https://openalex.org/I1331384533"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kiana Frank","raw_affiliation_strings":["Pacific Biosciences Research Center,, University of Hawaii - Manoa, USA"],"affiliations":[{"raw_affiliation_string":"Pacific Biosciences Research Center,, University of Hawaii - Manoa, USA","institution_ids":["https://openalex.org/I68554272","https://openalex.org/I117965899","https://openalex.org/I1331384533"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090961587","display_name":"Gwen A. Jacobs","orcid":"https://orcid.org/0000-0002-9925-6916"},"institutions":[{"id":"https://openalex.org/I1331384533","display_name":"University of Hawaii System","ror":"https://ror.org/03tzaeb71","country_code":"US","type":"education","lineage":["https://openalex.org/I1331384533"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gwen Jacobs","raw_affiliation_strings":["Information Technology Services - Cyberinfrastructure, University of Hawaii, USA"],"affiliations":[{"raw_affiliation_string":"Information Technology Services - Cyberinfrastructure, University of Hawaii, USA","institution_ids":["https://openalex.org/I1331384533"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5080587331"],"corresponding_institution_ids":["https://openalex.org/I1331384533"],"apc_list":null,"apc_paid":null,"fwci":0.1716,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.4711585,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"7"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9814000129699707,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.98089998960495,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gateway","display_name":"Gateway (web page)","score":0.9087005853652954},{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.7477830648422241},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.7361950874328613},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5811752080917358},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5487703084945679},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5092290639877319},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5091807246208191},{"id":"https://openalex.org/keywords/default-gateway","display_name":"Default gateway","score":0.41868042945861816},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.33359289169311523},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.23355698585510254},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.20352739095687866},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.16988766193389893},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11954799294471741},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.11659076809883118}],"concepts":[{"id":"https://openalex.org/C2777710495","wikidata":"https://www.wikidata.org/wiki/Q5527195","display_name":"Gateway (web page)","level":2,"score":0.9087005853652954},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.7477830648422241},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.7361950874328613},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5811752080917358},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5487703084945679},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5092290639877319},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5091807246208191},{"id":"https://openalex.org/C187713609","wikidata":"https://www.wikidata.org/wiki/Q2465461","display_name":"Default gateway","level":2,"score":0.41868042945861816},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.33359289169311523},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.23355698585510254},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.20352739095687866},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.16988766193389893},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11954799294471741},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.11659076809883118},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3491418.3530291","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3491418.3530291","pdf_url":null,"source":{"id":"https://openalex.org/S4306523034","display_name":"Practice and Experience in Advanced Research Computing","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Practice and Experience in Advanced Research Computing","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6499999761581421,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G4901086961","display_name":null,"funder_award_id":"1931439,1931575, 1557349,1636402","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W1822648038","https://openalex.org/W1899011294","https://openalex.org/W1969435169","https://openalex.org/W2003342954","https://openalex.org/W2106308757","https://openalex.org/W2108718991","https://openalex.org/W2112147882","https://openalex.org/W2117457769","https://openalex.org/W2146176543","https://openalex.org/W2401404581","https://openalex.org/W2513506562","https://openalex.org/W2568671473","https://openalex.org/W2597357676","https://openalex.org/W2784273717","https://openalex.org/W2907644757","https://openalex.org/W2980011270"],"related_works":["https://openalex.org/W2093262417","https://openalex.org/W2123131699","https://openalex.org/W1518499115","https://openalex.org/W2122599377","https://openalex.org/W2915304347","https://openalex.org/W2918879532","https://openalex.org/W3045301923","https://openalex.org/W2794872059","https://openalex.org/W2080562317","https://openalex.org/W76359671"],"abstract_inverted_index":{"In":[0],"collaboration":[1],"with":[2],"the":[3,14,21,30,70],"Center":[4],"for":[5,50,75],"Microbiome":[6],"Analysis":[7],"through":[8,77],"Island":[9],"Knowledge":[10],"and":[11,20,39,55,59,81],"Investigations":[12],"(C-M\u0100IKI),":[13],"Hawaii":[15,22,76],"EPSCoR":[16],"Ike":[17],"Wai":[18],"project":[19],"Data":[23],"Science":[24],"Institute,":[25],"a":[26,47],"new":[27],"science":[28],"gateway,":[29,32],"C-M\u0100IKI":[31,66],"was":[33],"developed":[34],"to":[35,57],"support":[36,60],"modern,":[37],"interoperable":[38],"scalable":[40],"microbiome":[41,62,73],"data":[42,63,74],"analysis.":[43,64],"This":[44],"gateway":[45,67],"provides":[46],"web-based":[48],"interface":[49],"accessing":[51],"high-performance":[52],"computing":[53],"resources":[54],"storage":[56],"enable":[58],"reproducible":[61],"The":[65],"is":[68],"accelerating":[69],"analysis":[71],"of":[72,79],"ease":[78],"use":[80],"centralized":[82],"infrastructure.":[83]},"counts_by_year":[{"year":2024,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}