{"id":"https://openalex.org/W4293023543","doi":"https://doi.org/10.1145/3487553.3524701","title":"Exploring Representations for Singular and Multi-Concept Relations for Biomedical Named Entity Normalization","display_name":"Exploring Representations for Singular and Multi-Concept Relations for Biomedical Named Entity Normalization","publication_year":2022,"publication_date":"2022-04-25","ids":{"openalex":"https://openalex.org/W4293023543","doi":"https://doi.org/10.1145/3487553.3524701","pmid":"https://pubmed.ncbi.nlm.nih.gov/37465200"},"language":"en","primary_location":{"id":"doi:10.1145/3487553.3524701","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3487553.3524701","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3487553.3524701","source":{"id":"https://openalex.org/S4363608846","display_name":"Companion Proceedings of the Web Conference 2022","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Companion Proceedings of the Web Conference 2022","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://dl.acm.org/doi/pdf/10.1145/3487553.3524701","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047189767","display_name":"Clint Cuffy","orcid":null},"institutions":[{"id":"https://openalex.org/I184840846","display_name":"Virginia Commonwealth University","ror":"https://ror.org/02nkdxk79","country_code":"US","type":"education","lineage":["https://openalex.org/I184840846"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Clint Cuffy","raw_affiliation_strings":["Natural Language Processing Lab, Virginia Commonwealth University, USA"],"affiliations":[{"raw_affiliation_string":"Natural Language Processing Lab, Virginia Commonwealth University, USA","institution_ids":["https://openalex.org/I184840846"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036154359","display_name":"Evan French","orcid":"https://orcid.org/0000-0002-5809-5810"},"institutions":[{"id":"https://openalex.org/I184840846","display_name":"Virginia Commonwealth University","ror":"https://ror.org/02nkdxk79","country_code":"US","type":"education","lineage":["https://openalex.org/I184840846"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Evan French","raw_affiliation_strings":["Natural Language Processing Lab, Virginia Commonwealth University, USA"],"affiliations":[{"raw_affiliation_string":"Natural Language Processing Lab, Virginia Commonwealth University, USA","institution_ids":["https://openalex.org/I184840846"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029168118","display_name":"Sophia Fehrmann","orcid":null},"institutions":[{"id":"https://openalex.org/I184840846","display_name":"Virginia Commonwealth University","ror":"https://ror.org/02nkdxk79","country_code":"US","type":"education","lineage":["https://openalex.org/I184840846"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sophia Fehrmann","raw_affiliation_strings":["Natural Language Processing Lab, Virginia Commonwealth University, USA"],"affiliations":[{"raw_affiliation_string":"Natural Language Processing Lab, Virginia Commonwealth University, USA","institution_ids":["https://openalex.org/I184840846"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083901654","display_name":"Bridget T. McInnes","orcid":"https://orcid.org/0000-0003-2297-6672"},"institutions":[{"id":"https://openalex.org/I184840846","display_name":"Virginia Commonwealth University","ror":"https://ror.org/02nkdxk79","country_code":"US","type":"education","lineage":["https://openalex.org/I184840846"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bridget T. McInnes","raw_affiliation_strings":["Natural Language Processing Lab, Virginia Commonwealth University, USA"],"affiliations":[{"raw_affiliation_string":"Natural Language Processing Lab, Virginia Commonwealth University, USA","institution_ids":["https://openalex.org/I184840846"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5047189767"],"corresponding_institution_ids":["https://openalex.org/I184840846"],"apc_list":null,"apc_paid":null,"fwci":0.8803,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.70259638,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":"2022","issue":null,"first_page":"823","last_page":"832"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8183094263076782},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.640498161315918},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.6138468384742737},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.523230254650116},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4752114713191986},{"id":"https://openalex.org/keywords/entity-linking","display_name":"Entity linking","score":0.47309258580207825},{"id":"https://openalex.org/keywords/knowledge-base","display_name":"Knowledge base","score":0.43396061658859253},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.4200521409511566},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.4186883270740509},{"id":"https://openalex.org/keywords/formal-concept-analysis","display_name":"Formal concept analysis","score":0.4185813367366791},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.38092178106307983},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.33535465598106384}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8183094263076782},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.640498161315918},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6138468384742737},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.523230254650116},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4752114713191986},{"id":"https://openalex.org/C96711827","wikidata":"https://www.wikidata.org/wiki/Q17012245","display_name":"Entity linking","level":3,"score":0.47309258580207825},{"id":"https://openalex.org/C4554734","wikidata":"https://www.wikidata.org/wiki/Q593744","display_name":"Knowledge base","level":2,"score":0.43396061658859253},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.4200521409511566},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.4186883270740509},{"id":"https://openalex.org/C76363472","wikidata":"https://www.wikidata.org/wiki/Q1437394","display_name":"Formal concept analysis","level":2,"score":0.4185813367366791},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.38092178106307983},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.33535465598106384},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1145/3487553.3524701","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3487553.3524701","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3487553.3524701","source":{"id":"https://openalex.org/S4363608846","display_name":"Companion Proceedings of the Web Conference 2022","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Companion Proceedings of the Web Conference 2022","raw_type":"proceedings-article"},{"id":"pmid:37465200","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37465200","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the ... International World-Wide Web Conference. International WWW Conference","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10353314","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10353314","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10353314/pdf/nihms-1914411.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nd","license_id":"https://openalex.org/licenses/cc-by-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proc Int World Wide Web Conf","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1145/3487553.3524701","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3487553.3524701","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3487553.3524701","source":{"id":"https://openalex.org/S4363608846","display_name":"Companion Proceedings of the Web Conference 2022","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Companion Proceedings of the Web Conference 2022","raw_type":"proceedings-article"},"sustainable_development_goals":[{"score":0.7799999713897705,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G3015141988","display_name":null,"funder_award_id":"UL1TR002649","funder_id":"https://openalex.org/F4320316438","funder_display_name":"Georgia Clinical and Translational Science Alliance"},{"id":"https://openalex.org/G3999804545","display_name":null,"funder_award_id":"UL1TR002649","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G909397616","display_name":null,"funder_award_id":"1939951","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320316438","display_name":"Georgia Clinical and Translational Science Alliance","ror":null},{"id":"https://openalex.org/F4320337472","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4293023543.pdf","grobid_xml":"https://content.openalex.org/works/W4293023543.grobid-xml"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W1550258693","https://openalex.org/W1981208470","https://openalex.org/W2131546905","https://openalex.org/W2142016317","https://openalex.org/W2169099542","https://openalex.org/W2346452181","https://openalex.org/W2808598571","https://openalex.org/W2911489562","https://openalex.org/W2962872978","https://openalex.org/W2995349381","https://openalex.org/W3034229721","https://openalex.org/W3098749353","https://openalex.org/W3104578551","https://openalex.org/W3137481621","https://openalex.org/W3170822064"],"related_works":["https://openalex.org/W2186562580","https://openalex.org/W3198729192","https://openalex.org/W4255258373","https://openalex.org/W2593907245","https://openalex.org/W3000685722","https://openalex.org/W2793132289","https://openalex.org/W2520117834","https://openalex.org/W626980589","https://openalex.org/W4313162113","https://openalex.org/W1884363728"],"abstract_inverted_index":{"Since":[0],"the":[1,4,95],"rise":[2],"of":[3,26],"COVID-19":[5],"pandemic,":[6],"peer-reviewed":[7],"biomedical":[8,79],"repositories":[9],"have":[10,22],"experienced":[11],"a":[12,23,78],"surge":[13],"in":[14,91],"chemical":[15,36],"and":[16,29,33,48],"disease":[17],"related":[18],"queries.":[19],"These":[20],"queries":[21],"wide":[24],"variety":[25],"naming":[27],"conventions":[28],"nomenclatures":[30],"from":[31],"trademark":[32],"generic,":[34],"to":[35,63,93],"composition":[37],"mentions.":[38],"Normalizing":[39],"or":[40,82,113],"disambiguating":[41],"these":[42],"mentions":[43,71],"within":[44,77,116],"texts":[45],"provides":[46],"researchers":[47],"data-curators":[49],"with":[50],"more":[51],"relevant":[52],"articles":[53],"returned":[54],"by":[55,68],"their":[56,73],"search":[57],"query.":[58],"Named":[59],"entity":[60,70],"normalization":[61],"aims":[62],"automate":[64],"this":[65],"disambiguation":[66],"process":[67],"linking":[69],"onto":[72],"appropriate":[74],"candidate":[75],"concepts":[76],"knowledge":[80],"base":[81],"ontology.":[83],"We":[84,101],"explore":[85],"several":[86],"term":[87,109],"embedding":[88,105],"aggregation":[89],"techniques":[90],"addition":[92],"how":[94],"term's":[96],"context":[97],"affects":[98],"evaluation":[99],"performance.":[100],"also":[102],"evaluate":[103],"our":[104],"approaches":[106],"for":[107],"normalizing":[108],"instances":[110],"containing":[111],"one":[112],"many":[114],"relations":[115],"unstructured":[117],"texts.":[118]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
