{"id":"https://openalex.org/W4206412650","doi":"https://doi.org/10.1145/3473258.3473271","title":"Extracting and Evaluating Features from RNA Virus Sequences to Predict Host Species Susceptibility Using Deep Learning","display_name":"Extracting and Evaluating Features from RNA Virus Sequences to Predict Host Species Susceptibility Using Deep Learning","publication_year":2021,"publication_date":"2021-05-21","ids":{"openalex":"https://openalex.org/W4206412650","doi":"https://doi.org/10.1145/3473258.3473271"},"language":"en","primary_location":{"id":"doi:10.1145/3473258.3473271","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3473258.3473271","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3473258.3473271","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 13th International Conference on Bioinformatics and Biomedical Technology","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://dl.acm.org/doi/pdf/10.1145/3473258.3473271","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062822133","display_name":"Kevin Sutanto","orcid":null},"institutions":[{"id":"https://openalex.org/I153718931","display_name":"University of Ottawa","ror":"https://ror.org/03c4mmv16","country_code":"CA","type":"education","lineage":["https://openalex.org/I153718931"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Kevin Sutanto","raw_affiliation_strings":["University of Ottawa, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Ottawa, Canada","institution_ids":["https://openalex.org/I153718931"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016281244","display_name":"Marcel Turcotte","orcid":"https://orcid.org/0000-0002-4877-1029"},"institutions":[{"id":"https://openalex.org/I153718931","display_name":"University of Ottawa","ror":"https://ror.org/03c4mmv16","country_code":"CA","type":"education","lineage":["https://openalex.org/I153718931"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Marcel Turcotte","raw_affiliation_strings":["University of Ottawa, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Ottawa, Canada","institution_ids":["https://openalex.org/I153718931"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I153718931"],"apc_list":null,"apc_paid":null,"fwci":1.6867,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.84893883,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"81","last_page":"89"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.989799976348877,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.989799976348877,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9886999726295471,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12492","display_name":"Zoonotic diseases and public health","score":0.9836000204086304,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.7632749676704407},{"id":"https://openalex.org/keywords/host","display_name":"Host (biology)","score":0.6854637861251831},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.6297167539596558},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6004663705825806},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5249913930892944},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.48341357707977295},{"id":"https://openalex.org/keywords/rna-virus","display_name":"RNA virus","score":0.41835179924964905},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.27550095319747925},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2524123191833496}],"concepts":[{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.7632749676704407},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.6854637861251831},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.6297167539596558},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6004663705825806},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5249913930892944},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.48341357707977295},{"id":"https://openalex.org/C2779174946","wikidata":"https://www.wikidata.org/wiki/Q751911","display_name":"RNA virus","level":4,"score":0.41835179924964905},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.27550095319747925},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2524123191833496}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3473258.3473271","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3473258.3473271","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3473258.3473271","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 13th International Conference on Bioinformatics and Biomedical Technology","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.1145/3473258.3473271","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3473258.3473271","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3473258.3473271","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 13th International Conference on Bioinformatics and Biomedical Technology","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320314000","display_name":"Compute Canada","ror":"https://ror.org/03ty8yr27"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4206412650.pdf","grobid_xml":"https://content.openalex.org/works/W4206412650.grobid-xml"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W1492465290","https://openalex.org/W1612034467","https://openalex.org/W1971454748","https://openalex.org/W2020496613","https://openalex.org/W2025890951","https://openalex.org/W2027195993","https://openalex.org/W2058069729","https://openalex.org/W2076063813","https://openalex.org/W2085281262","https://openalex.org/W2103685216","https://openalex.org/W2105070391","https://openalex.org/W2108982334","https://openalex.org/W2122403585","https://openalex.org/W2122612332","https://openalex.org/W2128486459","https://openalex.org/W2133609692","https://openalex.org/W2140251504","https://openalex.org/W2144802497","https://openalex.org/W2154963941","https://openalex.org/W2156125289","https://openalex.org/W2157475700","https://openalex.org/W2170747616","https://openalex.org/W2205922906","https://openalex.org/W2559100382","https://openalex.org/W2603067364","https://openalex.org/W2700382303","https://openalex.org/W2732139758","https://openalex.org/W2734399491","https://openalex.org/W2749072282","https://openalex.org/W2799487719","https://openalex.org/W2810889556","https://openalex.org/W2888784731","https://openalex.org/W2890017579","https://openalex.org/W2915583118","https://openalex.org/W3003110834","https://openalex.org/W3010059301","https://openalex.org/W3012078024","https://openalex.org/W3016074853","https://openalex.org/W3024003125","https://openalex.org/W3024057275","https://openalex.org/W3048846953","https://openalex.org/W3098049011","https://openalex.org/W3128772323","https://openalex.org/W4253153605"],"related_works":["https://openalex.org/W2117112636","https://openalex.org/W2001981265","https://openalex.org/W2147993839","https://openalex.org/W1840103016","https://openalex.org/W2098803005","https://openalex.org/W1965478554","https://openalex.org/W2255974537","https://openalex.org/W3092640155","https://openalex.org/W1998441997","https://openalex.org/W2089686585"],"abstract_inverted_index":{"Identifying":[0],"and":[1,97,133,145],"monitoring":[2],"hosts":[3,55],"of":[4,71,130,151,169,179],"zoonotic":[5,60],"RNA":[6,10,72,103,115,142],"viruses,":[7,61,73],"that":[8,56,66,106,166],"is,":[9],"viruses":[11],"which":[12],"can":[13,107],"be":[14,42,108],"transmitted":[15],"from":[16,69,101,155],"one":[17],"species":[18,85],"to":[19,31,37,82,89,120],"another,":[20],"including":[21],"the":[22,26,76,102,111,128,134,146,152,156,170,174],"recent":[23],"SARS-CoV-2":[24],"causing":[25],"COVID-19":[27],"pandemic,":[28],"is":[29],"paramount":[30],"control":[32,38],"their":[33],"spread.":[34],"However,":[35],"efforts":[36],"such":[39,59],"spread":[40],"may":[41,57],"affected":[43],"if":[44],"there":[45],"are":[46,118],"unmonitored":[47],"or":[48],"unknown":[49],"hosts.":[50],"To":[51],"help":[52],"identify":[53],"potential":[54],"harbour":[58],"we":[62,164],"propose":[63],"a":[64,139,167],"pipeline":[65],"extracts":[67,96],"features":[68,78,99,137,172],"sequences":[70,144],"then":[74],"uses":[75,98],"extracted":[77,136,171],"with":[79,138],"deep":[80],"learning":[81],"predict":[83],"host":[84,147],"susceptibility.":[86],"In":[87],"addition":[88],"using":[90],"sequence-related":[91],"features,":[92],"our":[93,131],"method":[94,132],"also":[95],"derived":[100],"secondary":[104,116],"structures":[105,117],"formed":[109],"by":[110],"viral":[112,153],"sequences,":[113],"since":[114],"known":[119],"take":[121],"part":[122],"in":[123],"virus-host":[124],"interaction.":[125],"We":[126],"evaluated":[127],"performance":[129],"different":[135],"dataset":[140],"containing":[141],"virus":[143],"they":[148],"infect,":[149],"regardless":[150],"species,":[154],"NCBI":[157],"Virus":[158],"database.":[159],"Using":[160],"10-fold":[161],"cross":[162],"validation,":[163],"found":[165],"combination":[168],"yielded":[173],"highest":[175],"overall":[176],"prediction":[177],"accuracy":[178],"86.89%.":[180]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2026-07-30T17:31:21.811387","created_date":"2025-10-10T00:00:00"}
