{"id":"https://openalex.org/W4206357390","doi":"https://doi.org/10.1145/3473258.3473269","title":"Cellular Similarity based Imputation for Single cell RNA Sequencing Data","display_name":"Cellular Similarity based Imputation for Single cell RNA Sequencing Data","publication_year":2021,"publication_date":"2021-05-21","ids":{"openalex":"https://openalex.org/W4206357390","doi":"https://doi.org/10.1145/3473258.3473269"},"language":"en","primary_location":{"id":"doi:10.1145/3473258.3473269","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3473258.3473269","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 13th International Conference on Bioinformatics and Biomedical Technology","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041553936","display_name":"Chenliang Liu","orcid":"https://orcid.org/0000-0003-2983-3105"},"institutions":[{"id":"https://openalex.org/I1327237609","display_name":"Ministry of Education of the People's Republic of China","ror":"https://ror.org/01mv9t934","country_code":"CN","type":"government","lineage":["https://openalex.org/I1327237609","https://openalex.org/I4210127390"]},{"id":"https://openalex.org/I3125743391","display_name":"China University of Geosciences (Beijing)","ror":"https://ror.org/04q6c7p66","country_code":"CN","type":"education","lineage":["https://openalex.org/I3125743391"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chenliang Liu","raw_affiliation_strings":["China University of Geosciences and Hubei Key Laboratory of Advanced Control and Intelligent Automation for Complex Systems;Engineering Research Center of Intelligent Technology for Geo-Exploration,Ministry of Education, China","Engineering Research Center of Intelligent Technology for Geo-Exploration,Ministry of Education, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"China University of Geosciences and Hubei Key Laboratory of Advanced Control and Intelligent Automation for Complex Systems;Engineering Research Center of Intelligent Technology for Geo-Exploration,Ministry of Education, China","institution_ids":["https://openalex.org/I3125743391"]},{"raw_affiliation_string":"Engineering Research Center of Intelligent Technology for Geo-Exploration,Ministry of Education, China","institution_ids":["https://openalex.org/I1327237609"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046009262","display_name":"Yuan Zhu","orcid":"https://orcid.org/0000-0003-1372-9135"},"institutions":[{"id":"https://openalex.org/I1327237609","display_name":"Ministry of Education of the People's Republic of China","ror":"https://ror.org/01mv9t934","country_code":"CN","type":"government","lineage":["https://openalex.org/I1327237609","https://openalex.org/I4210127390"]},{"id":"https://openalex.org/I3125743391","display_name":"China University of Geosciences (Beijing)","ror":"https://ror.org/04q6c7p66","country_code":"CN","type":"education","lineage":["https://openalex.org/I3125743391"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuan Zhu","raw_affiliation_strings":["China University of Geosciences and Hubei Key Laboratory of Advanced Control and Intelligent Automation for Complex Systems;Engineering Research Center of Intelligent Technology for Geo-Exploration,Ministry of Education, China","Engineering Research Center of Intelligent Technology for Geo-Exploration,Ministry of Education, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"China University of Geosciences and Hubei Key Laboratory of Advanced Control and Intelligent Automation for Complex Systems;Engineering Research Center of Intelligent Technology for Geo-Exploration,Ministry of Education, China","institution_ids":["https://openalex.org/I3125743391"]},{"raw_affiliation_string":"Engineering Research Center of Intelligent Technology for Geo-Exploration,Ministry of Education, China","institution_ids":["https://openalex.org/I1327237609"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020255809","display_name":"Houwang Zhang","orcid":"https://orcid.org/0000-0002-2358-0613"},"institutions":[{"id":"https://openalex.org/I1327237609","display_name":"Ministry of Education of the People's Republic of China","ror":"https://ror.org/01mv9t934","country_code":"CN","type":"government","lineage":["https://openalex.org/I1327237609","https://openalex.org/I4210127390"]},{"id":"https://openalex.org/I3125743391","display_name":"China University of Geosciences (Beijing)","ror":"https://ror.org/04q6c7p66","country_code":"CN","type":"education","lineage":["https://openalex.org/I3125743391"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Houwang Zhang","raw_affiliation_strings":["China University of Geosciences and Hubei Key Laboratory of Advanced Control and Intelligent Automation for Complex Systems;Engineering Research Center of Intelligent Technology for Geo-Exploration,Ministry of Education, China","Engineering Research Center of Intelligent Technology for Geo-Exploration,Ministry of Education, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"China University of Geosciences and Hubei Key Laboratory of Advanced Control and Intelligent Automation for Complex Systems;Engineering Research Center of Intelligent Technology for Geo-Exploration,Ministry of Education, China","institution_ids":["https://openalex.org/I3125743391"]},{"raw_affiliation_string":"Engineering Research Center of Intelligent Technology for Geo-Exploration,Ministry of Education, China","institution_ids":["https://openalex.org/I1327237609"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.29379479,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"65","last_page":"70"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9771999716758728,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9682000279426575,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/imputation","display_name":"Imputation (statistics)","score":0.8426604270935059},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6405868530273438},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6072765588760376},{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-Seq","score":0.583584189414978},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5124750733375549},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.47566550970077515},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.46146634221076965},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3552435040473938},{"id":"https://openalex.org/keywords/missing-data","display_name":"Missing data","score":0.3476608395576477},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3319869637489319},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.24750488996505737},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.23263278603553772},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.18944698572158813},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1766604781150818},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.10877639055252075},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1076306700706482}],"concepts":[{"id":"https://openalex.org/C58041806","wikidata":"https://www.wikidata.org/wiki/Q1660484","display_name":"Imputation (statistics)","level":3,"score":0.8426604270935059},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6405868530273438},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6072765588760376},{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.583584189414978},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5124750733375549},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.47566550970077515},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.46146634221076965},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3552435040473938},{"id":"https://openalex.org/C9357733","wikidata":"https://www.wikidata.org/wiki/Q6878417","display_name":"Missing data","level":2,"score":0.3476608395576477},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3319869637489319},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.24750488996505737},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.23263278603553772},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.18944698572158813},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1766604781150818},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.10877639055252075},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1076306700706482},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3473258.3473269","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3473258.3473269","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 13th International Conference on Bioinformatics and Biomedical Technology","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","score":0.47999998927116394,"display_name":"Zero hunger"}],"awards":[{"id":"https://openalex.org/G3725255849","display_name":null,"funder_award_id":"CUGGC02","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"}],"funders":[{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W1523794535","https://openalex.org/W1967327758","https://openalex.org/W1981509058","https://openalex.org/W1988391018","https://openalex.org/W2069295116","https://openalex.org/W2122374500","https://openalex.org/W2137460766","https://openalex.org/W2143787026","https://openalex.org/W2148358298","https://openalex.org/W2187089797","https://openalex.org/W2747877289","https://openalex.org/W2751468300","https://openalex.org/W2784581489","https://openalex.org/W2792693509","https://openalex.org/W2805619986","https://openalex.org/W2900510132","https://openalex.org/W2950104637","https://openalex.org/W2951217100","https://openalex.org/W3009560560","https://openalex.org/W3081929186","https://openalex.org/W3091601777","https://openalex.org/W3121210620"],"related_works":["https://openalex.org/W2181530120","https://openalex.org/W4211215373","https://openalex.org/W2024529227","https://openalex.org/W2055961818","https://openalex.org/W1574575415","https://openalex.org/W3144172081","https://openalex.org/W3179858851","https://openalex.org/W3028371478","https://openalex.org/W2081476516","https://openalex.org/W2581984549"],"abstract_inverted_index":{"Single":[0],"cell":[1,12,16,57,125],"RNA":[2,25],"sequencing":[3,26,58],"(scRNA-seq)":[4],"technology":[5],"can":[6],"study":[7,38],"gene":[8,135],"expression":[9,136],"in":[10,100,143,168],"single":[11,56],"resolution":[13],"and":[14,44,49,176],"solve":[15],"heterogeneity":[17],"that":[18],"cannot":[19],"be":[20],"solved":[21],"by":[22,62,107],"the":[23,40,79,96,108,120,130,134,140,144,152],"traditional":[24],"(Bulk":[27],"RNA-seq)":[28],"technology.":[29],"It":[30],"provides":[31],"a":[32,71,85],"powerful":[33],"analytical":[34],"tool":[35],"for":[36],"in-depth":[37],"of":[39,47,51,74,81,88],"immune,":[41],"regulatory,":[42],"replication,":[43],"other":[45,151],"activities":[46,53],"cells":[48],"explanations":[50],"life":[52],"rules.":[54],"However,":[55],"experiments":[59],"are":[60],"hindered":[61],"several":[63],"technical":[64],"issues,":[65],"which":[66],"cause":[67],"output":[68],"scRNA-seq":[69,101,156,162],"with":[70],"high":[72],"percentage":[73],"zeros":[75],"(dropout":[76],"events),":[77],"impacting":[78],"reliability":[80],"downstream":[82,170],"analyses.":[83],"Therefore,":[84],"great":[86],"number":[87],"computational":[89],"methods":[90,158],"have":[91],"been":[92],"proposed":[93],"to":[94,132,138],"address":[95],"increased":[97],"sparsity":[98],"observed":[99],"data.":[102,145],"In":[103],"this":[104],"paper,":[105],"motivated":[106],"image":[109],"denoising":[110],"method,":[111],"we":[112],"propose":[113],"an":[114],"imputation":[115,157],"algorithm":[116],"CSI":[117,146],"based":[118],"on":[119,159],"similarity":[121,126],"between":[122],"cells.":[123],"The":[124],"is":[127],"considered":[128],"as":[129,173],"weight":[131],"average":[133],"values":[137,142],"impute":[139],"missing":[141],"achieves":[147],"better":[148,166],"accuracy":[149],"than":[150],"7":[153],"publicly":[154],"notable":[155],"some":[160,169],"real":[161],"data,":[163],"especially":[164],"gains":[165],"performance":[167],"analysis":[171,175],"such":[172],"cluster":[174],"pseudo":[177],"trajectory":[178],"inference.":[179]},"counts_by_year":[],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
