{"id":"https://openalex.org/W4281647104","doi":"https://doi.org/10.1145/3470496.3527436","title":"SeGraM","display_name":"SeGraM","publication_year":2022,"publication_date":"2022-05-31","ids":{"openalex":"https://openalex.org/W4281647104","doi":"https://doi.org/10.1145/3470496.3527436"},"language":"en","primary_location":{"id":"doi:10.1145/3470496.3527436","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3470496.3527436","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 49th Annual International Symposium on Computer Architecture","raw_type":"proceedings-article"},"type":"preprint","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026337594","display_name":"Damla Senol Cali","orcid":"https://orcid.org/0000-0002-3665-6285"},"institutions":[{"id":"https://openalex.org/I4210099505","display_name":"BioNano Genomics (United States)","ror":"https://ror.org/014pv7733","country_code":"US","type":"company","lineage":["https://openalex.org/I4210099505"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Damla Senol Cali","raw_affiliation_strings":["Bionano Genomics"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bionano Genomics","institution_ids":["https://openalex.org/I4210099505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083376338","display_name":"Konstantinos Kanellopoulos","orcid":"https://orcid.org/0000-0002-5637-6088"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Konstantinos Kanellopoulos","raw_affiliation_strings":["ETH Z\u00fcrich"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ETH Z\u00fcrich","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042072020","display_name":"Jo\u00ebl Lindegger","orcid":"https://orcid.org/0000-0003-2581-8637"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Jo\u00ebl Lindegger","raw_affiliation_strings":["ETH Z\u00fcrich"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ETH Z\u00fcrich","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076512151","display_name":"Z\u00fclal Bing\u00f6l","orcid":"https://orcid.org/0000-0002-2828-9665"},"institutions":[{"id":"https://openalex.org/I168864056","display_name":"Bilkent University","ror":"https://ror.org/02vh8a032","country_code":"TR","type":"education","lineage":["https://openalex.org/I168864056"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Z\u00fclal Bing\u00f6l","raw_affiliation_strings":["Bilkent University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bilkent University","institution_ids":["https://openalex.org/I168864056"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072395015","display_name":"Gurpreet S. Kalsi","orcid":"https://orcid.org/0009-0000-7018-7585"},"institutions":[{"id":"https://openalex.org/I1343180700","display_name":"Intel (United States)","ror":"https://ror.org/01ek73717","country_code":"US","type":"company","lineage":["https://openalex.org/I1343180700"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gurpreet S. Kalsi","raw_affiliation_strings":["Intel Labs"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Intel Labs","institution_ids":["https://openalex.org/I1343180700"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088769114","display_name":"Ziyi Zuo","orcid":"https://orcid.org/0000-0002-9979-7536"},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ziyi Zuo","raw_affiliation_strings":["Carnegie Mellon University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Carnegie Mellon University","institution_ids":["https://openalex.org/I74973139"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066286509","display_name":"Can F\u0131rt\u0131na","orcid":"https://orcid.org/0000-0002-6548-7863"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Can Firtina","raw_affiliation_strings":["ETH Z\u00fcrich"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ETH Z\u00fcrich","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060363985","display_name":"Meryem Banu Cavlak","orcid":"https://orcid.org/0000-0003-4475-6945"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Meryem Banu Cavlak","raw_affiliation_strings":["ETH Z\u00fcrich"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ETH Z\u00fcrich","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002255450","display_name":"Jeremie Kim","orcid":null},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Jeremie Kim","raw_affiliation_strings":["ETH Z\u00fcrich"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ETH Z\u00fcrich","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048764555","display_name":"Nika Mansouri Ghiasi","orcid":"https://orcid.org/0000-0002-0833-0042"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Nika Mansouri Ghiasi","raw_affiliation_strings":["ETH Z\u00fcrich"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ETH Z\u00fcrich","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100760604","display_name":"Gagandeep Singh","orcid":"https://orcid.org/0000-0002-9299-2961"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Gagandeep Singh","raw_affiliation_strings":["ETH Z\u00fcrich"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ETH Z\u00fcrich","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044416322","display_name":"Juan G\u00f3mez-Luna","orcid":"https://orcid.org/0000-0002-6514-1571"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Juan G\u00f3mez-Luna","raw_affiliation_strings":["ETH Z\u00fcrich"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ETH Z\u00fcrich","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011927657","display_name":"Nour Almadhoun Alserr","orcid":null},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Nour Almadhoun Alserr","raw_affiliation_strings":["ETH Z\u00fcrich"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ETH Z\u00fcrich","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081055664","display_name":"Mohammed Alser","orcid":"https://orcid.org/0000-0002-6117-3701"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Mohammed Alser","raw_affiliation_strings":["ETH Z\u00fcrich"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ETH Z\u00fcrich","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036799188","display_name":"Sreenivas Subramoney","orcid":"https://orcid.org/0000-0001-5372-0173"},"institutions":[{"id":"https://openalex.org/I1343180700","display_name":"Intel (United States)","ror":"https://ror.org/01ek73717","country_code":"US","type":"company","lineage":["https://openalex.org/I1343180700"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sreenivas Subramoney","raw_affiliation_strings":["Intel Labs"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Intel Labs","institution_ids":["https://openalex.org/I1343180700"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074885623","display_name":"Can Alkan","orcid":"https://orcid.org/0000-0002-5443-0706"},"institutions":[{"id":"https://openalex.org/I168864056","display_name":"Bilkent University","ror":"https://ror.org/02vh8a032","country_code":"TR","type":"education","lineage":["https://openalex.org/I168864056"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Can Alkan","raw_affiliation_strings":["Bilkent University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bilkent University","institution_ids":["https://openalex.org/I168864056"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036666743","display_name":"Saugata Ghose","orcid":"https://orcid.org/0000-0002-9138-0613"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Saugata Ghose","raw_affiliation_strings":["University of Illinois Urbana-Champaign"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Illinois Urbana-Champaign","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054655832","display_name":"Onur Mutlu","orcid":null},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Onur Mutlu","raw_affiliation_strings":["ETH Z\u00fcrich"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ETH Z\u00fcrich","institution_ids":["https://openalex.org/I35440088"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":18,"corresponding_author_ids":["https://openalex.org/A5026337594"],"corresponding_institution_ids":["https://openalex.org/I4210099505"],"apc_list":null,"apc_paid":null,"fwci":2.6038,"has_fulltext":false,"cited_by_count":33,"citation_normalized_percentile":{"value":0.90714476,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"638","last_page":"655"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.988099992275238,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.6435115337371826},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5872461199760437},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5478406548500061},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5273873805999756},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.48836347460746765},{"id":"https://openalex.org/keywords/alignment-free-sequence-analysis","display_name":"Alignment-free sequence analysis","score":0.45631301403045654},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.4419594705104828},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.32019364833831787},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.3195444643497467},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.27314895391464233},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.25676101446151733},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.18314579129219055},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17611229419708252},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11505246162414551},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.10948207974433899}],"concepts":[{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.6435115337371826},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5872461199760437},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5478406548500061},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5273873805999756},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.48836347460746765},{"id":"https://openalex.org/C180384323","wikidata":"https://www.wikidata.org/wiki/Q16335137","display_name":"Alignment-free sequence analysis","level":5,"score":0.45631301403045654},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.4419594705104828},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.32019364833831787},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.3195444643497467},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.27314895391464233},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.25676101446151733},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18314579129219055},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17611229419708252},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11505246162414551},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.10948207974433899},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3470496.3527436","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3470496.3527436","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 49th Annual International Symposium on Computer Architecture","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":186,"referenced_works":["https://openalex.org/W26356079","https://openalex.org/W87616783","https://openalex.org/W1568015765","https://openalex.org/W1647671624","https://openalex.org/W1661539689","https://openalex.org/W1912672559","https://openalex.org/W1965830721","https://openalex.org/W1966822396","https://openalex.org/W1971522751","https://openalex.org/W1981943579","https://openalex.org/W1996373267","https://openalex.org/W1999790144","https://openalex.org/W2001496424","https://openalex.org/W2011632873","https://openalex.org/W2011963492","https://openalex.org/W2017369466","https://openalex.org/W2030966511","https://openalex.org/W2035239012","https://openalex.org/W2037412015","https://openalex.org/W2042210471","https://openalex.org/W2064280842","https://openalex.org/W2068448872","https://openalex.org/W2074231493","https://openalex.org/W2083870688","https://openalex.org/W2085668020","https://openalex.org/W2088749788","https://openalex.org/W2095680943","https://openalex.org/W2103624880","https://openalex.org/W2104105892","https://openalex.org/W2104549677","https://openalex.org/W2111295912","https://openalex.org/W2113312463","https://openalex.org/W2116020886","https://openalex.org/W2118532220","https://openalex.org/W2120230074","https://openalex.org/W2121716038","https://openalex.org/W2125345961","https://openalex.org/W2139747296","https://openalex.org/W2142113273","https://openalex.org/W2142875853","https://openalex.org/W2144560237","https://openalex.org/W2152872804","https://openalex.org/W2157534438","https://openalex.org/W2160177274","https://openalex.org/W2160969485","https://openalex.org/W2166825456","https://openalex.org/W2194172909","https://openalex.org/W2259815689","https://openalex.org/W2282294254","https://openalex.org/W2294783954","https://openalex.org/W2508029414","https://openalex.org/W2515673159","https://openalex.org/W2547528004","https://openalex.org/W2560228154","https://openalex.org/W2566870951","https://openalex.org/W2579012589","https://openalex.org/W2583135230","https://openalex.org/W2583377988","https://openalex.org/W2584785188","https://openalex.org/W2606268188","https://openalex.org/W2606984267","https://openalex.org/W2607669908","https://openalex.org/W2612654866","https://openalex.org/W2729477418","https://openalex.org/W2731064643","https://openalex.org/W2759946193","https://openalex.org/W2760599003","https://openalex.org/W2761132374","https://openalex.org/W2789007918","https://openalex.org/W2792035812","https://openalex.org/W2792451020","https://openalex.org/W2794532328","https://openalex.org/W2795118915","https://openalex.org/W2809195560","https://openalex.org/W2809646241","https://openalex.org/W2870561134","https://openalex.org/W2888300707","https://openalex.org/W2900405058","https://openalex.org/W2900776157","https://openalex.org/W2901214479","https://openalex.org/W2903388693","https://openalex.org/W2904739694","https://openalex.org/W2910081202","https://openalex.org/W2921796727","https://openalex.org/W2922398414","https://openalex.org/W2923143097","https://openalex.org/W2923172207","https://openalex.org/W2951135776","https://openalex.org/W2951591319","https://openalex.org/W2952097909","https://openalex.org/W2955563193","https://openalex.org/W2958016817","https://openalex.org/W2964849163","https://openalex.org/W2965566614","https://openalex.org/W2971801673","https://openalex.org/W2979823675","https://openalex.org/W2980639821","https://openalex.org/W2980982284","https://openalex.org/W2995027388","https://openalex.org/W2995418367","https://openalex.org/W2996409412","https://openalex.org/W2997518568","https://openalex.org/W3001121439","https://openalex.org/W3005029022","https://openalex.org/W3007172120","https://openalex.org/W3008701988","https://openalex.org/W3011176674","https://openalex.org/W3013878438","https://openalex.org/W3016287095","https://openalex.org/W3023531100","https://openalex.org/W3035003252","https://openalex.org/W3035066704","https://openalex.org/W3036029011","https://openalex.org/W3036478084","https://openalex.org/W3042538963","https://openalex.org/W3083902223","https://openalex.org/W3085951696","https://openalex.org/W3086246013","https://openalex.org/W3086574032","https://openalex.org/W3088711112","https://openalex.org/W3091333637","https://openalex.org/W3091803956","https://openalex.org/W3092652421","https://openalex.org/W3099458570","https://openalex.org/W3101227640","https://openalex.org/W3101704407","https://openalex.org/W3103269557","https://openalex.org/W3110777056","https://openalex.org/W3111918943","https://openalex.org/W3120923229","https://openalex.org/W3167833281","https://openalex.org/W3191503410","https://openalex.org/W3201830280","https://openalex.org/W3202731849","https://openalex.org/W3203675953","https://openalex.org/W3205889289","https://openalex.org/W3206914323","https://openalex.org/W3211833515","https://openalex.org/W4214546858","https://openalex.org/W4214559301","https://openalex.org/W4225293672","https://openalex.org/W4254753097","https://openalex.org/W6630562399","https://openalex.org/W6638564077","https://openalex.org/W6645806222","https://openalex.org/W6660885796","https://openalex.org/W6672163627","https://openalex.org/W6672364634","https://openalex.org/W6673225110","https://openalex.org/W6674170611","https://openalex.org/W6674373410","https://openalex.org/W6675061135","https://openalex.org/W6677862393","https://openalex.org/W6678995114","https://openalex.org/W6680002762","https://openalex.org/W6680106728","https://openalex.org/W6682885661","https://openalex.org/W6685184340","https://openalex.org/W6685290738","https://openalex.org/W6725510526","https://openalex.org/W6735985753","https://openalex.org/W6743970594","https://openalex.org/W6748810007","https://openalex.org/W6751639929","https://openalex.org/W6753059007","https://openalex.org/W6758210228","https://openalex.org/W6761045722","https://openalex.org/W6763069391","https://openalex.org/W6763279951","https://openalex.org/W6764588805","https://openalex.org/W6764880546","https://openalex.org/W6766461518","https://openalex.org/W6766785479","https://openalex.org/W6769014509","https://openalex.org/W6769616836","https://openalex.org/W6774023352","https://openalex.org/W6786790660","https://openalex.org/W6788713498","https://openalex.org/W6788939328","https://openalex.org/W6789460812","https://openalex.org/W6791801599","https://openalex.org/W6792319920","https://openalex.org/W6795410112","https://openalex.org/W6805507004","https://openalex.org/W6838138771","https://openalex.org/W6891762763"],"related_works":["https://openalex.org/W4210830088","https://openalex.org/W2767590279","https://openalex.org/W3011183076","https://openalex.org/W2794893153","https://openalex.org/W2721624558","https://openalex.org/W2079322808","https://openalex.org/W2216477337","https://openalex.org/W2772185703","https://openalex.org/W2584868213","https://openalex.org/W2795731640"],"abstract_inverted_index":{"A":[0],"critical":[1],"step":[2],"of":[3,10,41,102],"genome":[4,25,64,74],"sequence":[5,26,36],"analysis":[6],"is":[7,80,91],"the":[8,33,42,47,61],"mapping":[9,79,90],"sequenced":[11],"DNA":[12],"fragments":[13],"(i.e.,":[14,27,65],"reads)":[15],"collected":[16],"from":[17],"an":[18],"individual":[19],"to":[20,60],"a":[21,38,56,92,98],"known":[22],"linear":[23,34],"reference":[24,35,43,63],"sequence-to-sequence":[28,78],"mapping).":[29],"Recent":[30],"works":[31],"replace":[32],"with":[37,83,97],"graph-based":[39,62],"representation":[40],"genome,":[44],"which":[45],"captures":[46],"genetic":[48],"variations":[49],"and":[50,87],"diversity":[51],"across":[52],"many":[53,84],"individuals":[54],"in":[55,69,73],"population.":[57],"Mapping":[58],"reads":[59],"sequence-to-graph":[66,89],"mapping)":[67],"results":[68],"notable":[70],"quality":[71],"improvements":[72],"analysis.":[75],"Unfortunately,":[76],"while":[77],"well":[81],"studied":[82],"available":[85],"tools":[86,105],"accelerators,":[88],"more":[93],"difficult":[94],"computational":[95],"problem,":[96],"much":[99],"smaller":[100],"number":[101],"practical":[103],"software":[104],"currently":[106],"available.":[107]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":2}],"updated_date":"2026-04-28T14:05:53.105641","created_date":"2022-06-13T00:00:00"}
