{"id":"https://openalex.org/W3210047337","doi":"https://doi.org/10.1145/3458817.3476207","title":"Parallel construction of module networks","display_name":"Parallel construction of module networks","publication_year":2021,"publication_date":"2021-10-21","ids":{"openalex":"https://openalex.org/W3210047337","doi":"https://doi.org/10.1145/3458817.3476207","mag":"3210047337"},"language":"en","primary_location":{"id":"doi:10.1145/3458817.3476207","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3458817.3476207","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059632472","display_name":"Ankit Srivastava","orcid":"https://orcid.org/0000-0002-2206-094X"},"institutions":[{"id":"https://openalex.org/I130701444","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44","country_code":"US","type":"education","lineage":["https://openalex.org/I130701444"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ankit Srivastava","raw_affiliation_strings":["Georgia Institute of Technology"],"affiliations":[{"raw_affiliation_string":"Georgia Institute of Technology","institution_ids":["https://openalex.org/I130701444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070968071","display_name":"Sriram P. Chockalingam","orcid":"https://orcid.org/0000-0003-1358-7691"},"institutions":[{"id":"https://openalex.org/I130701444","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44","country_code":"US","type":"education","lineage":["https://openalex.org/I130701444"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sriram P. Chockalingam","raw_affiliation_strings":["Georgia Institute of Technology"],"affiliations":[{"raw_affiliation_string":"Georgia Institute of Technology","institution_ids":["https://openalex.org/I130701444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081855361","display_name":"Maneesha Aluru","orcid":"https://orcid.org/0000-0003-1353-9622"},"institutions":[{"id":"https://openalex.org/I130701444","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44","country_code":"US","type":"education","lineage":["https://openalex.org/I130701444"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Maneesha Aluru","raw_affiliation_strings":["Georgia Institute of Technology"],"affiliations":[{"raw_affiliation_string":"Georgia Institute of Technology","institution_ids":["https://openalex.org/I130701444"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5074347913","display_name":"Srinivas Aluru","orcid":"https://orcid.org/0000-0003-4279-469X"},"institutions":[{"id":"https://openalex.org/I130701444","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44","country_code":"US","type":"education","lineage":["https://openalex.org/I130701444"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Srinivas Aluru","raw_affiliation_strings":["Georgia Institute of Technology"],"affiliations":[{"raw_affiliation_string":"Georgia Institute of Technology","institution_ids":["https://openalex.org/I130701444"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5059632472"],"corresponding_institution_ids":["https://openalex.org/I130701444"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.15885428,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"14"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11303","display_name":"Bayesian Modeling and Causal Inference","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11303","display_name":"Bayesian Modeling and Causal Inference","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9810000061988831,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9772999882698059,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.8508099317550659},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7805240154266357},{"id":"https://openalex.org/keywords/bayesian-network","display_name":"Bayesian network","score":0.6309360861778259},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.5420303344726562},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.5420026183128357},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.48444488644599915},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.45501673221588135},{"id":"https://openalex.org/keywords/shared-memory","display_name":"Shared memory","score":0.45052701234817505},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.41916632652282715},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.28874123096466064},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.11035412549972534}],"concepts":[{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.8508099317550659},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7805240154266357},{"id":"https://openalex.org/C33724603","wikidata":"https://www.wikidata.org/wiki/Q812540","display_name":"Bayesian network","level":2,"score":0.6309360861778259},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.5420303344726562},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.5420026183128357},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.48444488644599915},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.45501673221588135},{"id":"https://openalex.org/C133875982","wikidata":"https://www.wikidata.org/wiki/Q764810","display_name":"Shared memory","level":2,"score":0.45052701234817505},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.41916632652282715},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.28874123096466064},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.11035412549972534},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3458817.3476207","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3458817.3476207","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7108550778","display_name":null,"funder_award_id":"OAC-1828187,OAC-1854828","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":63,"referenced_works":["https://openalex.org/W106646882","https://openalex.org/W201565394","https://openalex.org/W1492767570","https://openalex.org/W1493357981","https://openalex.org/W1494732973","https://openalex.org/W1520618518","https://openalex.org/W1530398305","https://openalex.org/W1581645897","https://openalex.org/W1594007058","https://openalex.org/W1608748481","https://openalex.org/W1615454278","https://openalex.org/W1821016918","https://openalex.org/W1832761773","https://openalex.org/W1837392992","https://openalex.org/W1942633596","https://openalex.org/W1965831205","https://openalex.org/W1979141644","https://openalex.org/W1985942733","https://openalex.org/W1988391018","https://openalex.org/W2012053950","https://openalex.org/W2055575746","https://openalex.org/W2074490119","https://openalex.org/W2094171104","https://openalex.org/W2099900459","https://openalex.org/W2100603120","https://openalex.org/W2104877015","https://openalex.org/W2107923541","https://openalex.org/W2108191052","https://openalex.org/W2121278962","https://openalex.org/W2121781315","https://openalex.org/W2127053639","https://openalex.org/W2128181599","https://openalex.org/W2128563079","https://openalex.org/W2128999403","https://openalex.org/W2130688920","https://openalex.org/W2140360868","https://openalex.org/W2151303132","https://openalex.org/W2151992080","https://openalex.org/W2152482800","https://openalex.org/W2154354945","https://openalex.org/W2160103276","https://openalex.org/W2161986541","https://openalex.org/W2197990644","https://openalex.org/W2507556282","https://openalex.org/W2559770535","https://openalex.org/W2737189355","https://openalex.org/W2739439313","https://openalex.org/W2746258700","https://openalex.org/W2752061190","https://openalex.org/W2752853835","https://openalex.org/W2773775195","https://openalex.org/W2798124328","https://openalex.org/W2888860273","https://openalex.org/W2911499856","https://openalex.org/W2978334798","https://openalex.org/W3000437955","https://openalex.org/W3085162807","https://openalex.org/W3103408694","https://openalex.org/W3104533353","https://openalex.org/W4235272722","https://openalex.org/W4389138872","https://openalex.org/W4393536851","https://openalex.org/W6676167818"],"related_works":["https://openalex.org/W4401278057","https://openalex.org/W1837558792","https://openalex.org/W2098482419","https://openalex.org/W4254638342","https://openalex.org/W1982466989","https://openalex.org/W2070983336","https://openalex.org/W4384344236","https://openalex.org/W2465501459","https://openalex.org/W2033847453","https://openalex.org/W2995170196"],"abstract_inverted_index":{"Module":[0],"networks":[1,9,37,95],"(MoNets)":[2],"are":[3,11],"a":[4,39,60,74],"parameter-sharing":[5],"specialization":[6],"of":[7,23,26,69,77,82,103,140,145,149],"Bayesian":[8],"that":[10],"used":[12,62],"for":[13,35,54,96,123,143],"reasoning":[14],"about":[15],"multi-dimensional":[16],"entities":[17],"with":[18,30,38],"concerted":[19],"interactions":[20],"between":[21],"groups":[22],"variables.":[24,42],"Construction":[25],"MoNets":[27,56,78,142],"is":[28,132],"compute-intensive,":[29],"sequential":[31,63],"methods":[32],"requiring":[33],"months":[34],"learning":[36,139],"few":[40],"thousand":[41],"In":[43],"this":[44],"paper,":[45],"we":[46],"present":[47],"the":[48,67,80,126,138],"first":[49],"scalable":[50],"distributed-memory":[51],"parallel":[52,71,91],"solution":[53],"constructing":[55],"by":[57],"parallelizing":[58],"Lemon-Tree,":[59],"widely":[61],"software.":[64],"We":[65],"demonstrate":[66],"scalability":[68],"our":[70,90],"method":[72,131],"on":[73],"key":[75],"application":[76],"-":[79],"construction":[81],"genome-scale":[83],"gene":[84],"regulatory":[85,94],"networks.":[86],"Using":[87],"4096":[88],"cores,":[89],"implementation":[92],"constructs":[93],"5,":[97],"716":[98],"and":[99,110,118,134],"18,":[100],"373":[101],"genes":[102],"two":[104],"model":[105],"organisms":[106],"in":[107],"24":[108],"minutes":[109],"4.2":[111],"hours,":[112],"compared":[113],"to":[114,137],"an":[115],"estimated":[116],"49":[117],"1561":[119],"days":[120],"using":[121],"Lemon-Tree":[122],"generating":[124],"exactly":[125],"same":[127],"networks,":[128],"respectively.":[129],"Our":[130],"application-agnostic":[133],"broadly":[135],"applicable":[136],"high-dimensional":[141],"any":[144],"its":[146],"wide":[147],"array":[148],"applications.":[150]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
