{"id":"https://openalex.org/W3175504678","doi":"https://doi.org/10.1145/3457682.3457767","title":"Identifying the Key Residues Regulating the Binding between Antibody Avelumab and PD-L1 VIA Molecular Dynamics Simulation","display_name":"Identifying the Key Residues Regulating the Binding between Antibody Avelumab and PD-L1 VIA Molecular Dynamics Simulation","publication_year":2021,"publication_date":"2021-02-26","ids":{"openalex":"https://openalex.org/W3175504678","doi":"https://doi.org/10.1145/3457682.3457767","mag":"3175504678"},"language":"en","primary_location":{"id":"doi:10.1145/3457682.3457767","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3457682.3457767","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 13th International Conference on Machine Learning and Computing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101516791","display_name":"Wenping Liu","orcid":"https://orcid.org/0000-0002-9949-0972"},"institutions":[{"id":"https://openalex.org/I4210152216","display_name":"Guangdong Food and Drug Vocational College","ror":"https://ror.org/04xhre718","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210152216"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Wenping Liu","raw_affiliation_strings":["Guangdong Food and Drug Vocational College, China"],"affiliations":[{"raw_affiliation_string":"Guangdong Food and Drug Vocational College, China","institution_ids":["https://openalex.org/I4210152216"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100443173","display_name":"Ting Chen","orcid":"https://orcid.org/0000-0001-8414-6346"},"institutions":[{"id":"https://openalex.org/I4210152216","display_name":"Guangdong Food and Drug Vocational College","ror":"https://ror.org/04xhre718","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210152216"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ting Chen","raw_affiliation_strings":["Guangdong Food and Drug Vocational College, China"],"affiliations":[{"raw_affiliation_string":"Guangdong Food and Drug Vocational College, China","institution_ids":["https://openalex.org/I4210152216"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102205197","display_name":"Shengsheng Lai","orcid":null},"institutions":[{"id":"https://openalex.org/I4210152216","display_name":"Guangdong Food and Drug Vocational College","ror":"https://ror.org/04xhre718","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210152216"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shengsheng Lai","raw_affiliation_strings":["Guangdong Food and Drug Vocational College, China"],"affiliations":[{"raw_affiliation_string":"Guangdong Food and Drug Vocational College, China","institution_ids":["https://openalex.org/I4210152216"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076104480","display_name":"Gangping Zhang","orcid":"https://orcid.org/0009-0006-0290-8284"},"institutions":[{"id":"https://openalex.org/I4210152216","display_name":"Guangdong Food and Drug Vocational College","ror":"https://ror.org/04xhre718","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210152216"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Gangping Zhang","raw_affiliation_strings":["Guangdong Food and Drug Vocational College, China"],"affiliations":[{"raw_affiliation_string":"Guangdong Food and Drug Vocational College, China","institution_ids":["https://openalex.org/I4210152216"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041388103","display_name":"Guangjian Liu","orcid":"https://orcid.org/0000-0001-9275-9214"},"institutions":[{"id":"https://openalex.org/I92039509","display_name":"Guangzhou Medical University","ror":"https://ror.org/00zat6v61","country_code":"CN","type":"education","lineage":["https://openalex.org/I92039509"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guangjian Liu","raw_affiliation_strings":["Guangzhou Women and Children's Medical Center and Guangzhou Medical University, China"],"affiliations":[{"raw_affiliation_string":"Guangzhou Women and Children's Medical Center and Guangzhou Medical University, China","institution_ids":["https://openalex.org/I92039509"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053838491","display_name":"Haoyu Jin","orcid":"https://orcid.org/0000-0003-0423-4667"},"institutions":[{"id":"https://openalex.org/I4210152216","display_name":"Guangdong Food and Drug Vocational College","ror":"https://ror.org/04xhre718","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210152216"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haoyu Jin","raw_affiliation_strings":["Guangdong Food and Drug Vocational College, China"],"affiliations":[{"raw_affiliation_string":"Guangdong Food and Drug Vocational College, China","institution_ids":["https://openalex.org/I4210152216"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5101516791"],"corresponding_institution_ids":["https://openalex.org/I4210152216"],"apc_list":null,"apc_paid":null,"fwci":0.1375,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.47450074,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"77","issue":null,"first_page":"557","last_page":"561"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10158","display_name":"Cancer Immunotherapy and Biomarkers","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11491","display_name":"CAR-T cell therapy research","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.5952455997467041},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.5770536661148071},{"id":"https://openalex.org/keywords/avelumab","display_name":"Avelumab","score":0.5700281858444214},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.48530787229537964},{"id":"https://openalex.org/keywords/antibody","display_name":"Antibody","score":0.4830825626850128},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4284512996673584},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.15417489409446716},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.14092528820037842},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.13307324051856995},{"id":"https://openalex.org/keywords/immunotherapy","display_name":"Immunotherapy","score":0.12641775608062744},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.12250378727912903},{"id":"https://openalex.org/keywords/computer-security","display_name":"Computer security","score":0.08577245473861694}],"concepts":[{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.5952455997467041},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.5770536661148071},{"id":"https://openalex.org/C2777381376","wikidata":"https://www.wikidata.org/wiki/Q21083261","display_name":"Avelumab","level":5,"score":0.5700281858444214},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.48530787229537964},{"id":"https://openalex.org/C159654299","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody","level":2,"score":0.4830825626850128},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4284512996673584},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.15417489409446716},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.14092528820037842},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.13307324051856995},{"id":"https://openalex.org/C2777701055","wikidata":"https://www.wikidata.org/wiki/Q1427096","display_name":"Immunotherapy","level":3,"score":0.12641775608062744},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.12250378727912903},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.08577245473861694},{"id":"https://openalex.org/C2780057760","wikidata":"https://www.wikidata.org/wiki/Q13896859","display_name":"Pembrolizumab","level":4,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3457682.3457767","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3457682.3457767","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 13th International Conference on Machine Learning and Computing","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W1974030600","https://openalex.org/W2001506085","https://openalex.org/W2027408247","https://openalex.org/W2047399603","https://openalex.org/W2150981663","https://openalex.org/W2163816642","https://openalex.org/W2234650031","https://openalex.org/W2510686645","https://openalex.org/W2516527638","https://openalex.org/W2562200138","https://openalex.org/W2599964303","https://openalex.org/W2617900819","https://openalex.org/W2750667003","https://openalex.org/W3087972878","https://openalex.org/W6657818778","https://openalex.org/W6756371607"],"related_works":["https://openalex.org/W4387497383","https://openalex.org/W2948807893","https://openalex.org/W2778153218","https://openalex.org/W2748952813","https://openalex.org/W1531601525","https://openalex.org/W4391375266","https://openalex.org/W2078814861","https://openalex.org/W2527526854","https://openalex.org/W1976181487","https://openalex.org/W1986764834"],"abstract_inverted_index":{"Avelumab,":[0],"approved":[1],"by":[2],"the":[3,11,37,41,51,57,61,85,90,99,104,127,168],"US":[4],"Food":[5],"and":[6,19,65,108,114,119,143],"Drug":[7],"Administration":[8],"(FDA)":[9],"for":[10,84,155],"treatment":[12],"of":[13,40,60,123,148,167,171],"Merkel":[14],"cell":[15],"carcinoma":[16],"in":[17,22,46,73],"adults":[18],"paediatric":[20],"patients":[21],"2017,":[23,47],"is":[24,63,150],"an":[25],"investigational":[26],"fully":[27],"human":[28],"anti\u2013PD-L1":[29],"IgG1":[30],"antibody":[31,158],"that":[32,74,98],"inhibits":[33],"PD-1/PD-L1":[34,161],"interactions.":[35],"Although":[36],"crystal":[38,76],"structure":[39],"avelumab/PD-L1":[42,86],"complex":[43,62,87],"was":[44],"reported":[45],"which":[48],"provided":[49],"us":[50],"interface":[52,128],"information":[53,59],"at":[54],"atom":[55],"level,":[56],"dynamics":[58,80],"missed,":[64],"some":[66],"key":[67],"residues":[68,101,133],"could":[69],"not":[70],"be":[71],"detected":[72],"static":[75],"structure.":[77],"Here,":[78],"molecular":[79],"simulations":[81],"were":[82],"performed":[83],"to":[88,92],"map":[89],"epitope":[91,100],"paratope":[93,132],"residues.":[94],"The":[95,131,145],"results":[96],"showed":[97],"locating":[102],"on":[103,134],"C":[105],"strand":[106,117,147,170],"(PD-L1TYR56":[107],"PD-L1GLU58),":[109],"CC\u2019":[110],"loop":[111,121],"(PD-L1GLU60,":[112],"PD-L1ASP61":[113],"PD-L1LYS62),":[115],"C\u2019":[116,146,169],"(PD-L1ASN63),":[118],"C'D":[120],"(PD-L1HIS69)":[122],"PD-L1":[124,149],"mainly":[125],"form":[126],"with":[129],"avelumab.":[130],"avelumab":[135,159],"include":[136],"TYR52H,":[137],"SER54H,":[138],"GLY102H,":[139],"THR105H,":[140],"TYR34L,":[141],"ASP52L":[142],"ARG99L.":[144],"also":[151],"a":[152],"binding":[153,166],"region":[154],"PD-1.":[156],"Thus,":[157],"block":[160],"interaction":[162],"through":[163],"direct":[164],"competitive":[165],"PD-L1.":[172]},"counts_by_year":[{"year":2023,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
