{"id":"https://openalex.org/W3174903146","doi":"https://doi.org/10.1145/3453800.3453810","title":"Parallel algorithm for the unsupervised binning of metagenomic sequences","display_name":"Parallel algorithm for the unsupervised binning of metagenomic sequences","publication_year":2021,"publication_date":"2021-01-29","ids":{"openalex":"https://openalex.org/W3174903146","doi":"https://doi.org/10.1145/3453800.3453810","mag":"3174903146"},"language":"en","primary_location":{"id":"doi:10.1145/3453800.3453810","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3453800.3453810","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 The 5th International Conference on Machine Learning and Soft Computing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101193943","display_name":"Vu Dang Hoang","orcid":"https://orcid.org/0000-0001-9605-3470"},"institutions":[{"id":"https://openalex.org/I4210148201","display_name":"Ho Chi Minh City University of Technology and Engineering","ror":"https://ror.org/05hzn5427","country_code":"VN","type":"education","lineage":["https://openalex.org/I4210148201"]}],"countries":["VN"],"is_corresponding":false,"raw_author_name":"Vu Hoang","raw_affiliation_strings":["HCMC University of Technology and Education, Vietnam"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"HCMC University of Technology and Education, Vietnam","institution_ids":["https://openalex.org/I4210148201"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027397613","display_name":"Vinh V. Le","orcid":"https://orcid.org/0000-0002-6996-1999"},"institutions":[{"id":"https://openalex.org/I4210148201","display_name":"Ho Chi Minh City University of Technology and Engineering","ror":"https://ror.org/05hzn5427","country_code":"VN","type":"education","lineage":["https://openalex.org/I4210148201"]}],"countries":["VN"],"is_corresponding":false,"raw_author_name":"Vinh V. Le","raw_affiliation_strings":["HCMC University of Technology and Education, Vietnam"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"HCMC University of Technology and Education, Vietnam","institution_ids":["https://openalex.org/I4210148201"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047751981","display_name":"Hoai Van Tran","orcid":null},"institutions":[{"id":"https://openalex.org/I123565023","display_name":"Vietnam National University Ho Chi Minh City","ror":"https://ror.org/00waaqh38","country_code":"VN","type":"education","lineage":["https://openalex.org/I123565023"]},{"id":"https://openalex.org/I47265099","display_name":"Ho Chi Minh City University of Technology","ror":"https://ror.org/04qva2324","country_code":"VN","type":"education","lineage":["https://openalex.org/I123565023","https://openalex.org/I47265099"]}],"countries":["VN"],"is_corresponding":false,"raw_author_name":"Hoai V. Tran","raw_affiliation_strings":["HCMC University of Technology-VNUHCM, Vietnam"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"HCMC University of Technology-VNUHCM, Vietnam","institution_ids":["https://openalex.org/I47265099","https://openalex.org/I123565023"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032730693","display_name":"Lang Tran","orcid":"https://orcid.org/0000-0002-8925-5549"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lang V. Tran","raw_affiliation_strings":["Institute of Applied Mechanics and Informatics,VAST, Vietnam"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Applied Mechanics and Informatics,VAST, Vietnam","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082022534","display_name":"H. Bao","orcid":"https://orcid.org/0000-0003-2652-6935"},"institutions":[{"id":"https://openalex.org/I123565023","display_name":"Vietnam National University Ho Chi Minh City","ror":"https://ror.org/00waaqh38","country_code":"VN","type":"education","lineage":["https://openalex.org/I123565023"]},{"id":"https://openalex.org/I47265099","display_name":"Ho Chi Minh City University of Technology","ror":"https://ror.org/04qva2324","country_code":"VN","type":"education","lineage":["https://openalex.org/I123565023","https://openalex.org/I47265099"]}],"countries":["VN"],"is_corresponding":false,"raw_author_name":"Bao Q. Huynh","raw_affiliation_strings":["HCMC University of Technology-VNUHCM, Vietnam"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"HCMC University of Technology-VNUHCM, Vietnam","institution_ids":["https://openalex.org/I47265099","https://openalex.org/I123565023"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.05583196,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"48","last_page":"53"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9868999719619751,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.967199981212616,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.8537584543228149},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8083782196044922},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5110400915145874},{"id":"https://openalex.org/keywords/multiprocessing","display_name":"Multiprocessing","score":0.5084285140037537},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5032667517662048},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.39839112758636475}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.8537584543228149},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8083782196044922},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5110400915145874},{"id":"https://openalex.org/C4822641","wikidata":"https://www.wikidata.org/wiki/Q846651","display_name":"Multiprocessing","level":2,"score":0.5084285140037537},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5032667517662048},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.39839112758636475},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3453800.3453810","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3453800.3453810","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 The 5th International Conference on Machine Learning and Soft Computing","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W1584790813","https://openalex.org/W1997673861","https://openalex.org/W2003347102","https://openalex.org/W2006907251","https://openalex.org/W2045204781","https://openalex.org/W2055043387","https://openalex.org/W2061680337","https://openalex.org/W2093634337","https://openalex.org/W2112888758","https://openalex.org/W2116572549","https://openalex.org/W2122646534","https://openalex.org/W2123372159","https://openalex.org/W2124637227","https://openalex.org/W2125826054","https://openalex.org/W2136145671","https://openalex.org/W2137604316","https://openalex.org/W2143377027","https://openalex.org/W2143842034","https://openalex.org/W2150208009","https://openalex.org/W2150484441","https://openalex.org/W2150593711","https://openalex.org/W2515836512","https://openalex.org/W2908149669","https://openalex.org/W2950686248","https://openalex.org/W2990618091","https://openalex.org/W3008594856","https://openalex.org/W3013665047","https://openalex.org/W3047746238"],"related_works":["https://openalex.org/W1980880150","https://openalex.org/W325986762","https://openalex.org/W2092845486","https://openalex.org/W4237297230","https://openalex.org/W1809394610","https://openalex.org/W2123607806","https://openalex.org/W2159088946","https://openalex.org/W2509294597","https://openalex.org/W2148915962","https://openalex.org/W2070426974"],"abstract_inverted_index":{"The":[0,58,103],"binning":[1,33,50,89],"of":[2,7,17,29,66,94],"metagenomic":[3,11,53],"sequences":[4,54],"is":[5,60],"one":[6],"crucial":[8],"steps":[9],"in":[10,36,91,109],"projects":[12,22],"which":[13],"allow":[14],"the":[15,21,64,83,92],"study":[16],"uncultured":[18],"organisms.":[19],"Although":[20],"need":[23],"to":[24,62],"analyze":[25],"a":[26,48,87],"huge":[27],"amount":[28],"data,":[30],"most":[31],"available":[32],"methods":[34],"run":[35],"single":[37],"mode,":[38],"and":[39,69,76,106],"thus":[40],"require":[41],"much":[42],"processing":[43],"time.":[44],"This":[45],"paper":[46],"proposes":[47],"parallel":[49],"algorithm":[51,85,90],"for":[52],"without":[55],"reference":[56],"databases.":[57],"method":[59],"able":[61],"utilize":[63],"strength":[65],"computing":[67],"clusters":[68],"shared-memory":[70],"multiprocessing":[71],"systems":[72],"by":[73],"using":[74],"MPI":[75],"OpenMP":[77],"techniques.":[78],"Experimental":[79],"results":[80],"show":[81],"that":[82],"proposed":[84],"outperforms":[86],"single-mode":[88],"aspect":[93],"computational":[95],"performance":[96],"while":[97],"still":[98],"achieving":[99],"similar":[100],"classification":[101],"quality.":[102],"source":[104],"codes":[105],"datasets":[107],"used":[108],"this":[110],"work":[111],"can":[112],"be":[113],"downloaded":[114],"from":[115],"https://bioinfolab.fit.hcmute.edu.vn/BiMetaPL.":[116]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}