{"id":"https://openalex.org/W3135348097","doi":"https://doi.org/10.1145/3434399","title":"Indexing Highly Repetitive String Collections, Part I","display_name":"Indexing Highly Repetitive String Collections, Part I","publication_year":2021,"publication_date":"2021-03-05","ids":{"openalex":"https://openalex.org/W3135348097","doi":"https://doi.org/10.1145/3434399","mag":"3135348097"},"language":"en","primary_location":{"id":"doi:10.1145/3434399","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3434399","pdf_url":null,"source":{"id":"https://openalex.org/S157921468","display_name":"ACM Computing Surveys","issn_l":"0360-0300","issn":["0360-0300","1557-7341"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ACM Computing Surveys","raw_type":"journal-article"},"type":"review","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5080743153","display_name":"Gonzalo Navarro","orcid":"https://orcid.org/0000-0002-2286-741X"},"institutions":[{"id":"https://openalex.org/I69737025","display_name":"University of Chile","ror":"https://ror.org/047gc3g35","country_code":"CL","type":"education","lineage":["https://openalex.org/I69737025"]}],"countries":["CL"],"is_corresponding":true,"raw_author_name":"Gonzalo Navarro","raw_affiliation_strings":["University of Chile, Santiago, Chile"],"affiliations":[{"raw_affiliation_string":"University of Chile, Santiago, Chile","institution_ids":["https://openalex.org/I69737025"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5080743153"],"corresponding_institution_ids":["https://openalex.org/I69737025"],"apc_list":null,"apc_paid":null,"fwci":4.4738,"has_fulltext":false,"cited_by_count":45,"citation_normalized_percentile":{"value":0.95287759,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"54","issue":"2","first_page":"1","last_page":"31"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11309","display_name":"Music and Audio Processing","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1711","display_name":"Signal Processing"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9765999913215637,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8209861516952515},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.7993897199630737},{"id":"https://openalex.org/keywords/string","display_name":"String (physics)","score":0.7531933784484863},{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.7066192030906677},{"id":"https://openalex.org/keywords/ideal","display_name":"Ideal (ethics)","score":0.5287154316902161},{"id":"https://openalex.org/keywords/string-searching-algorithm","display_name":"String searching algorithm","score":0.49686434864997864},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.49393779039382935},{"id":"https://openalex.org/keywords/space","display_name":"Space (punctuation)","score":0.4703291356563568},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.46455973386764526},{"id":"https://openalex.org/keywords/cover","display_name":"Cover (algebra)","score":0.45437073707580566},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.4452402591705322},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4339507818222046},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3813368082046509},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3322634696960449},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.11776643991470337},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.07983368635177612}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8209861516952515},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.7993897199630737},{"id":"https://openalex.org/C157486923","wikidata":"https://www.wikidata.org/wiki/Q1376436","display_name":"String (physics)","level":2,"score":0.7531933784484863},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.7066192030906677},{"id":"https://openalex.org/C2776639384","wikidata":"https://www.wikidata.org/wiki/Q840396","display_name":"Ideal (ethics)","level":2,"score":0.5287154316902161},{"id":"https://openalex.org/C7757238","wikidata":"https://www.wikidata.org/wiki/Q374040","display_name":"String searching algorithm","level":3,"score":0.49686434864997864},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.49393779039382935},{"id":"https://openalex.org/C2778572836","wikidata":"https://www.wikidata.org/wiki/Q380933","display_name":"Space (punctuation)","level":2,"score":0.4703291356563568},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.46455973386764526},{"id":"https://openalex.org/C2780428219","wikidata":"https://www.wikidata.org/wiki/Q16952335","display_name":"Cover (algebra)","level":2,"score":0.45437073707580566},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.4452402591705322},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4339507818222046},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3813368082046509},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3322634696960449},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.11776643991470337},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.07983368635177612},{"id":"https://openalex.org/C37914503","wikidata":"https://www.wikidata.org/wiki/Q156495","display_name":"Mathematical physics","level":1,"score":0.0},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3434399","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3434399","pdf_url":null,"source":{"id":"https://openalex.org/S157921468","display_name":"ACM Computing Surveys","issn_l":"0360-0300","issn":["0360-0300","1557-7341"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ACM Computing Surveys","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5199999809265137,"display_name":"Peace, Justice and strong institutions","id":"https://metadata.un.org/sdg/16"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":102,"referenced_works":["https://openalex.org/W120700570","https://openalex.org/W226134553","https://openalex.org/W631269286","https://openalex.org/W1485516007","https://openalex.org/W1485941238","https://openalex.org/W1502045574","https://openalex.org/W1532033082","https://openalex.org/W1573092629","https://openalex.org/W1931463589","https://openalex.org/W1965853364","https://openalex.org/W1968228074","https://openalex.org/W1972418517","https://openalex.org/W1973608346","https://openalex.org/W1974827091","https://openalex.org/W1979254690","https://openalex.org/W1995875735","https://openalex.org/W2011297770","https://openalex.org/W2017661493","https://openalex.org/W2018804864","https://openalex.org/W2019724649","https://openalex.org/W2022126655","https://openalex.org/W2030839740","https://openalex.org/W2037818726","https://openalex.org/W2062386565","https://openalex.org/W2064184672","https://openalex.org/W2067974452","https://openalex.org/W2072021854","https://openalex.org/W2077770566","https://openalex.org/W2085922539","https://openalex.org/W2088386938","https://openalex.org/W2099111195","https://openalex.org/W2101881908","https://openalex.org/W2104846587","https://openalex.org/W2107321288","https://openalex.org/W2107745473","https://openalex.org/W2111487449","https://openalex.org/W2113004376","https://openalex.org/W2118703123","https://openalex.org/W2119924552","https://openalex.org/W2121252285","https://openalex.org/W2129652681","https://openalex.org/W2130956967","https://openalex.org/W2132809979","https://openalex.org/W2138947530","https://openalex.org/W2141931308","https://openalex.org/W2149243190","https://openalex.org/W2150056094","https://openalex.org/W2150359208","https://openalex.org/W2157793907","https://openalex.org/W2158874082","https://openalex.org/W2159084616","https://openalex.org/W2159647614","https://openalex.org/W2161488606","https://openalex.org/W2164107415","https://openalex.org/W2171532727","https://openalex.org/W2173739051","https://openalex.org/W2343474118","https://openalex.org/W2346750882","https://openalex.org/W2478708596","https://openalex.org/W2517241835","https://openalex.org/W2522260339","https://openalex.org/W2533248932","https://openalex.org/W2537851465","https://openalex.org/W2551896619","https://openalex.org/W2565319307","https://openalex.org/W2577924862","https://openalex.org/W2582397176","https://openalex.org/W2593896499","https://openalex.org/W2602771387","https://openalex.org/W2611071497","https://openalex.org/W2614020870","https://openalex.org/W2737421126","https://openalex.org/W2765521106","https://openalex.org/W2790578235","https://openalex.org/W2794898040","https://openalex.org/W2811012751","https://openalex.org/W2889833303","https://openalex.org/W2890245531","https://openalex.org/W2896151262","https://openalex.org/W2904402310","https://openalex.org/W2944298321","https://openalex.org/W2951235224","https://openalex.org/W2964108621","https://openalex.org/W2972156826","https://openalex.org/W2987325813","https://openalex.org/W2999295646","https://openalex.org/W3027380342","https://openalex.org/W3033694976","https://openalex.org/W3042165818","https://openalex.org/W3069814052","https://openalex.org/W3099135117","https://openalex.org/W3111092147","https://openalex.org/W3114909914","https://openalex.org/W3115004854","https://openalex.org/W3116542221","https://openalex.org/W3125235775","https://openalex.org/W3127125728","https://openalex.org/W3127479364","https://openalex.org/W3173709428","https://openalex.org/W4213048098","https://openalex.org/W4214904110","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W3140834074","https://openalex.org/W4287817375","https://openalex.org/W3014145349","https://openalex.org/W2105557171","https://openalex.org/W4383749413","https://openalex.org/W3127125728","https://openalex.org/W2068421750","https://openalex.org/W2963726861","https://openalex.org/W3135348097","https://openalex.org/W3093408116"],"abstract_inverted_index":{"Two":[0],"decades":[1],"ago,":[2],"a":[3,41,103,119,196],"breakthrough":[4],"in":[5,55,240],"indexing":[6],"string":[7,38,68,131],"collections":[8,39,69,132],"made":[9],"it":[10],"possible":[11],"to":[12,51,98,111,126,152,170,181,210,219,223],"represent":[13],"them":[14,53],"within":[15],"their":[16,75,84],"compressed":[17,56,183,225],"space":[18],"while":[19],"at":[20],"the":[21,37,128,146,162,174,182,186,207,212,224,232,241],"same":[22],"time":[23],"offering":[24],"indexed":[25],"search":[26],"functionalities.":[27],"As":[28],"this":[29,99,138,157,245],"new":[30,104,120],"technology":[31],"permeated":[32],"through":[33],"applications":[34],"like":[35],"bioinformatics,":[36],"experienced":[40],"growth":[42],"that":[43,62,74,133,149,166,177],"outperforms":[44],"Moore\u2019s":[45],"Law":[46],"and":[47,101,173,217],"challenges":[48],"our":[49],"ability":[50],"handle":[52,127],"even":[54],"form.":[57],"It":[58],"turns":[59],"out,":[60],"fortunately,":[61],"many":[63],"of":[64,80,106,122,192,199,235,244],"these":[65,153],"rapidly":[66],"growing":[67],"are":[70,96,135],"highly":[71],"repetitive,":[72],"so":[73],"information":[76],"content":[77],"is":[78,231,238],"orders":[79],"magnitude":[81],"lower":[82],"than":[83],"plain":[85],"size.":[86],"The":[87,115],"statistical":[88],"compression":[89,164],"methods":[90],"used":[91,169],"for":[92,188],"classical":[93],"collections,":[94],"however,":[95],"blind":[97],"repetitiveness,":[100,172,193],"therefore":[102],"set":[105],"techniques":[107,176],"has":[108],"been":[109,168],"developed":[110],"properly":[112],"exploit":[113,171],"it.":[114],"resulting":[116],"indexes":[117],"form":[118],"generation":[121],"data":[123,154,213,226],"structures":[124],"able":[125],"huge":[129],"repetitive":[130],"we":[134,144,160,194],"facing.":[136],"In":[137,156,185],"survey,":[139],"formed":[140],"by":[141],"two":[142],"parts,":[143],"cover":[145],"algorithmic":[147,175],"developments":[148],"have":[150,167],"led":[151],"structures.":[155],"first":[158],"part,":[159],"describe":[161],"distinct":[163],"paradigms":[165],"provide":[178],"direct":[179,221],"access":[180,222],"strings.":[184],"quest":[187],"an":[189],"ideal":[190],"measure":[191],"uncover":[195],"fascinating":[197],"web":[198],"relations":[200],"between":[201],"those":[202],"measures,":[203],"as":[204,206],"well":[205],"limits":[208],"up":[209,218],"which":[211,220,237],"can":[214,227],"be":[215,228],"recovered,":[216],"provided.":[229],"This":[230],"basic":[233],"aspect":[234],"indexability,":[236],"covered":[239],"second":[242],"part":[243],"survey.":[246]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":12},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":6}],"updated_date":"2026-03-13T16:22:10.518609","created_date":"2025-10-10T00:00:00"}
