{"id":"https://openalex.org/W3095187380","doi":"https://doi.org/10.1145/3424978.3425036","title":"ProRice","display_name":"ProRice","publication_year":2020,"publication_date":"2020-10-15","ids":{"openalex":"https://openalex.org/W3095187380","doi":"https://doi.org/10.1145/3424978.3425036","mag":"3095187380"},"language":"en","primary_location":{"id":"doi:10.1145/3424978.3425036","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3424978.3425036","pdf_url":null,"source":{"id":"https://openalex.org/S4306523839","display_name":"Proceedings of the 4th International Conference on Computer Science and Application Engineering","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 4th International Conference on Computer Science and Application Engineering","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071877508","display_name":"Yanming Zuo","orcid":null},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yanming Zuo","raw_affiliation_strings":["School of Information and Computer, Laboratory of Anhui Beidou Precision Agriculture Information Engineering, College of Agronomy, Anhui Agricultural University Hefei, Anhui, China"],"affiliations":[{"raw_affiliation_string":"School of Information and Computer, Laboratory of Anhui Beidou Precision Agriculture Information Engineering, College of Agronomy, Anhui Agricultural University Hefei, Anhui, China","institution_ids":["https://openalex.org/I140221134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079212080","display_name":"Hejie Zhou","orcid":null},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hejie Zhou","raw_affiliation_strings":["School of Information and Computer, Laboratory of Anhui Beidou Precision Agriculture Information Engineering, College of Agronomy, Anhui Agricultural University Hefei, Anhui, China"],"affiliations":[{"raw_affiliation_string":"School of Information and Computer, Laboratory of Anhui Beidou Precision Agriculture Information Engineering, College of Agronomy, Anhui Agricultural University Hefei, Anhui, China","institution_ids":["https://openalex.org/I140221134"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044447237","display_name":"Zhenyu Yue","orcid":"https://orcid.org/0000-0002-9370-2540"},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhenyu Yue","raw_affiliation_strings":["School of Information and Computer, Laboratory of Anhui Beidou Precision Agriculture Information Engineering, Anhui Agricultural University Hefei, Anhui, China"],"affiliations":[{"raw_affiliation_string":"School of Information and Computer, Laboratory of Anhui Beidou Precision Agriculture Information Engineering, Anhui Agricultural University Hefei, Anhui, China","institution_ids":["https://openalex.org/I140221134"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5071877508"],"corresponding_institution_ids":["https://openalex.org/I140221134"],"apc_list":null,"apc_paid":null,"fwci":1.2051,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.80754717,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"1","issue":null,"first_page":"1","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5141675472259521}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5141675472259521}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3424978.3425036","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3424978.3425036","pdf_url":null,"source":{"id":"https://openalex.org/S4306523839","display_name":"Proceedings of the 4th International Conference on Computer Science and Application Engineering","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 4th International Conference on Computer Science and Application Engineering","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W7721663","https://openalex.org/W1975679166","https://openalex.org/W1979028385","https://openalex.org/W2002735806","https://openalex.org/W2065014938","https://openalex.org/W2113224678","https://openalex.org/W2118122261","https://openalex.org/W2138098955","https://openalex.org/W2153550523","https://openalex.org/W2167563188","https://openalex.org/W2175948239","https://openalex.org/W2411725395","https://openalex.org/W2415310056","https://openalex.org/W2578051997","https://openalex.org/W2754289562","https://openalex.org/W2799200068","https://openalex.org/W2883534252","https://openalex.org/W2929359750","https://openalex.org/W2946590503","https://openalex.org/W2967960129","https://openalex.org/W3003919276","https://openalex.org/W3007396174","https://openalex.org/W3012831588","https://openalex.org/W3022464290"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2093578348","https://openalex.org/W2376932109","https://openalex.org/W2382290278","https://openalex.org/W2049775471","https://openalex.org/W2350741829","https://openalex.org/W3004735627"],"abstract_inverted_index":{"Promoter":[0],"is":[1],"a":[2,11,32,62,74,119],"regulatory":[3],"region":[4],"of":[5,10,38,76,127,137],"DNA":[6],"usually":[7],"located":[8],"upstream":[9],"gene,":[12],"playing":[13],"an":[14,92,110],"important":[15],"role":[16],"in":[17,51,148],"regulating":[18],"gene":[19],"transcription.":[20],"There":[21],"exist":[22],"some":[23],"bioinformatics":[24],"algorithms":[25],"developed":[26],"for":[27,35,48,130],"predicting":[28],"promoters,":[29],"which":[30,53],"have":[31],"high":[33],"universality":[34],"all":[36],"kind":[37],"plants.":[39],"However,":[40],"very":[41],"little":[42],"work":[43],"has":[44],"been":[45],"specifically":[46],"done":[47],"identifying":[49],"promoters":[50,132],"rice,":[52],"might":[54],"affect":[55],"the":[56,80,85,98,105,125,135,138,149],"practical":[57],"application.":[58],"Here,":[59],"we":[60],"present":[61],"rice":[63,131],"promoter":[64,113],"prediction":[65,128],"tool,":[66],"ProRice.":[67],"This":[68],"predictor":[69,99,114],"was":[70],"established":[71],"based":[72],"on":[73,118],"series":[75],"sequence-based":[77],"features":[78],"and":[79,87,145],"data":[81],"sets":[82],"extracted":[83],"from":[84],"PlantProm":[86],"RAP-DB":[88],"databases.":[89],"We":[90,122],"applied":[91],"ensemble":[93],"learning":[94],"strategy":[95],"to":[96],"construct":[97],"with":[100],"robust":[101],"classification":[102],"performance.":[103],"Ultimately,":[104],"proposed":[106],"tool":[107],"clearly":[108],"outperformed":[109],"existing":[111],"non-rice-specific":[112],"when":[115],"comparing":[116],"them":[117],"test":[120],"set.":[121],"hope":[123],"that":[124],"improvement":[126],"power":[129],"will":[133],"help":[134],"development":[136],"frontier":[139],"research":[140],"field,":[141],"such":[142],"as":[143],"breeding":[144],"genetic":[146],"engineering":[147],"future.":[150]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2020-11-09T00:00:00"}
