{"id":"https://openalex.org/W3041993913","doi":"https://doi.org/10.1145/3405758.3405776","title":"Nanopore based Programmable DNA Structure Detection to Solve the Shortest Path Problem","display_name":"Nanopore based Programmable DNA Structure Detection to Solve the Shortest Path Problem","publication_year":2020,"publication_date":"2020-05-22","ids":{"openalex":"https://openalex.org/W3041993913","doi":"https://doi.org/10.1145/3405758.3405776","mag":"3041993913"},"language":"en","primary_location":{"id":"doi:10.1145/3405758.3405776","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3405758.3405776","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2020 12th International Conference on Bioinformatics and Biomedical Technology","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081222516","display_name":"Nan Zhao","orcid":"https://orcid.org/0000-0002-8444-026X"},"institutions":[{"id":"https://openalex.org/I153473198","display_name":"North China Electric Power University","ror":"https://ror.org/04qr5t414","country_code":"CN","type":"education","lineage":["https://openalex.org/I153473198"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Nan Zhao","raw_affiliation_strings":["School of Control and Computer Engineering, North China Electric Power University, Beijing, China"],"affiliations":[{"raw_affiliation_string":"School of Control and Computer Engineering, North China Electric Power University, Beijing, China","institution_ids":["https://openalex.org/I153473198"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100375481","display_name":"Xinxin Zhang","orcid":"https://orcid.org/0000-0003-1257-7328"},"institutions":[{"id":"https://openalex.org/I153473198","display_name":"North China Electric Power University","ror":"https://ror.org/04qr5t414","country_code":"CN","type":"education","lineage":["https://openalex.org/I153473198"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xinxin Zhang","raw_affiliation_strings":["School of Control and Computer Engineering, North China Electric Power University, Beijing, China"],"affiliations":[{"raw_affiliation_string":"School of Control and Computer Engineering, North China Electric Power University, Beijing, China","institution_ids":["https://openalex.org/I153473198"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100806856","display_name":"Yuan Liang","orcid":"https://orcid.org/0000-0002-0639-9716"},"institutions":[{"id":"https://openalex.org/I153473198","display_name":"North China Electric Power University","ror":"https://ror.org/04qr5t414","country_code":"CN","type":"education","lineage":["https://openalex.org/I153473198"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuan Liang","raw_affiliation_strings":["School of Control and Computer Engineering, North China Electric Power University, Beijing, China"],"affiliations":[{"raw_affiliation_string":"School of Control and Computer Engineering, North China Electric Power University, Beijing, China","institution_ids":["https://openalex.org/I153473198"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024036992","display_name":"Jing Yang","orcid":"https://orcid.org/0000-0001-5481-7962"},"institutions":[{"id":"https://openalex.org/I153473198","display_name":"North China Electric Power University","ror":"https://ror.org/04qr5t414","country_code":"CN","type":"education","lineage":["https://openalex.org/I153473198"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jing Yang","raw_affiliation_strings":["School of Control and Computer Engineering, North China Electric Power University, Beijing, China"],"affiliations":[{"raw_affiliation_string":"School of Control and Computer Engineering, North China Electric Power University, Beijing, China","institution_ids":["https://openalex.org/I153473198"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100439616","display_name":"Cheng Zhang","orcid":"https://orcid.org/0000-0002-1131-6516"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Cheng Zhang","raw_affiliation_strings":["School of Electronics Engineering and Computer Science, Peking University, Beijing, China"],"affiliations":[{"raw_affiliation_string":"School of Electronics Engineering and Computer Science, Peking University, Beijing, China","institution_ids":["https://openalex.org/I20231570"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5081222516"],"corresponding_institution_ids":["https://openalex.org/I153473198"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.06353715,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"40","issue":null,"first_page":"55","last_page":"60"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11582","display_name":"Nanopore and Nanochannel Transport Studies","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9876000285148621,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/shortest-path-problem","display_name":"Shortest path problem","score":0.8614097237586975},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7085177302360535},{"id":"https://openalex.org/keywords/nanopore","display_name":"Nanopore","score":0.6434616446495056},{"id":"https://openalex.org/keywords/path","display_name":"Path (computing)","score":0.5410953164100647},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.50784832239151},{"id":"https://openalex.org/keywords/dna-computing","display_name":"DNA computing","score":0.5016813278198242},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5005042552947998},{"id":"https://openalex.org/keywords/longest-path-problem","display_name":"Longest path problem","score":0.47009775042533875},{"id":"https://openalex.org/keywords/widest-path-problem","display_name":"Widest path problem","score":0.4579119086265564},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.39950916171073914},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.11676102876663208},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.07895389199256897}],"concepts":[{"id":"https://openalex.org/C22590252","wikidata":"https://www.wikidata.org/wiki/Q1058754","display_name":"Shortest path problem","level":3,"score":0.8614097237586975},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7085177302360535},{"id":"https://openalex.org/C141795571","wikidata":"https://www.wikidata.org/wiki/Q580942","display_name":"Nanopore","level":2,"score":0.6434616446495056},{"id":"https://openalex.org/C2777735758","wikidata":"https://www.wikidata.org/wiki/Q817765","display_name":"Path (computing)","level":2,"score":0.5410953164100647},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.50784832239151},{"id":"https://openalex.org/C82047324","wikidata":"https://www.wikidata.org/wiki/Q177126","display_name":"DNA computing","level":3,"score":0.5016813278198242},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5005042552947998},{"id":"https://openalex.org/C1465435","wikidata":"https://www.wikidata.org/wiki/Q2916352","display_name":"Longest path problem","level":4,"score":0.47009775042533875},{"id":"https://openalex.org/C83677490","wikidata":"https://www.wikidata.org/wiki/Q7998708","display_name":"Widest path problem","level":5,"score":0.4579119086265564},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.39950916171073914},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.11676102876663208},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.07895389199256897},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C42360764","wikidata":"https://www.wikidata.org/wiki/Q83588","display_name":"Chemical engineering","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3405758.3405776","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3405758.3405776","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2020 12th International Conference on Bioinformatics and Biomedical Technology","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W1966789782","https://openalex.org/W2003091620","https://openalex.org/W2102699655","https://openalex.org/W2126961173","https://openalex.org/W2316903776","https://openalex.org/W2365913980","https://openalex.org/W2774823587","https://openalex.org/W2789727279","https://openalex.org/W2897388634","https://openalex.org/W2898210895","https://openalex.org/W2904130045","https://openalex.org/W2906493741","https://openalex.org/W2914179673","https://openalex.org/W2939915101","https://openalex.org/W2942517304","https://openalex.org/W2946903484","https://openalex.org/W2982058709","https://openalex.org/W3006527588","https://openalex.org/W3103452448","https://openalex.org/W4210493499"],"related_works":["https://openalex.org/W2776102956","https://openalex.org/W2018146256","https://openalex.org/W2237480599","https://openalex.org/W4299588719","https://openalex.org/W2020255949","https://openalex.org/W2375775343","https://openalex.org/W1817899449","https://openalex.org/W4382866750","https://openalex.org/W2600678155","https://openalex.org/W2388410942"],"abstract_inverted_index":{"The":[0],"shortest":[1,52,128],"path":[2,53,71,129],"problem":[3,21],"in":[4,94,141],"graphs":[5],"is":[6,123],"a":[7,44,67,98],"famous":[8],"NP-complete":[9,162],"problem,":[10],"and":[11,32,76,91,145],"the":[12,27,51,55,60,63,74,79,89,95,113,119,127,131,134,142,146,152],"traditional":[13],"use":[14],"of":[15,30,54,78,130],"computer":[16],"algorithms":[17],"to":[18,49,59,88,125,158],"solve":[19,50],"this":[20,37],"has":[22],"great":[23],"limitations.":[24],"Based":[25],"on":[26],"nanopore":[28,106,120,147],"detections":[29],"parallelism":[31],"programmable":[33,45],"DNA":[34,46,85,100],"assembly":[35],"strategy,":[36],"paper":[38],"proposes":[39],"an":[40],"algorithm":[41,64,136],"that":[42,111],"uses":[43],"self-assembly":[47,80],"model":[48],"graph.":[56,132],"In":[57],"according":[58],"set":[61],"graph,":[62,96],"first":[65],"plans":[66],"specific":[68,99],"molecular":[69],"hybridization":[70],"by":[72],"inducing":[73],"start":[75,90],"end":[77,92],"chain":[81],"reactions.":[82],"Using":[83],"different":[84],"inputs":[86],"referring":[87],"points":[93],"thereby":[97],"structure":[101],"can":[102,115,137,155],"be":[103,116,138,156],"constructed.":[104],"Through":[105],"detection":[107],"technology,":[108],"all":[109],"paths":[110],"satisfy":[112],"conditions":[114],"found.":[117],"Therefore,":[118],"signal":[121],"analysis":[122],"performed":[124],"obtain":[126],"Considering":[133],"biocomputing":[135],"implemented":[139],"automatically":[140],"search":[143],"process,":[144],"results":[148],"have":[149],"high":[150],"reliability,":[151],"established":[153],"method":[154],"applied":[157],"solving":[159],"more":[160],"complex":[161],"problem.":[163]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}