{"id":"https://openalex.org/W3111918943","doi":"https://doi.org/10.1145/3400302.3415724","title":"NEST","display_name":"NEST","publication_year":2020,"publication_date":"2020-11-02","ids":{"openalex":"https://openalex.org/W3111918943","doi":"https://doi.org/10.1145/3400302.3415724","mag":"3111918943"},"language":"en","primary_location":{"id":"doi:10.1145/3400302.3415724","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3400302.3415724","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3400302.3415724","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 39th International Conference on Computer-Aided Design","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://dl.acm.org/doi/pdf/10.1145/3400302.3415724","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075671139","display_name":"Wenqin Huangfu","orcid":null},"institutions":[{"id":"https://openalex.org/I2803209242","display_name":"University of California System","ror":"https://ror.org/00pjdza24","country_code":"US","type":"education","lineage":["https://openalex.org/I2803209242"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wenqin Huangfu","raw_affiliation_strings":["University of California"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California","institution_ids":["https://openalex.org/I2803209242"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032065701","display_name":"Krishna T. Malladi","orcid":"https://orcid.org/0000-0002-3789-2255"},"institutions":[{"id":"https://openalex.org/I2250650973","display_name":"Samsung (South Korea)","ror":"https://ror.org/04w3jy968","country_code":"KR","type":"company","lineage":["https://openalex.org/I2250650973"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Krishna T. Malladi","raw_affiliation_strings":["Samsung Semiconductor, Inc"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Samsung Semiconductor, Inc","institution_ids":["https://openalex.org/I2250650973"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102837743","display_name":"Shuangchen Li","orcid":"https://orcid.org/0009-0003-6986-0463"},"institutions":[{"id":"https://openalex.org/I2803209242","display_name":"University of California System","ror":"https://ror.org/00pjdza24","country_code":"US","type":"education","lineage":["https://openalex.org/I2803209242"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shuangchen Li","raw_affiliation_strings":["University of California"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California","institution_ids":["https://openalex.org/I2803209242"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078298822","display_name":"Peng Gu","orcid":"https://orcid.org/0000-0002-2663-4568"},"institutions":[{"id":"https://openalex.org/I2803209242","display_name":"University of California System","ror":"https://ror.org/00pjdza24","country_code":"US","type":"education","lineage":["https://openalex.org/I2803209242"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peng Gu","raw_affiliation_strings":["University of California"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California","institution_ids":["https://openalex.org/I2803209242"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100385336","display_name":"Yuan Xie","orcid":"https://orcid.org/0000-0003-2093-1788"},"institutions":[{"id":"https://openalex.org/I2803209242","display_name":"University of California System","ror":"https://ror.org/00pjdza24","country_code":"US","type":"education","lineage":["https://openalex.org/I2803209242"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yuan Xie","raw_affiliation_strings":["University of California"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California","institution_ids":["https://openalex.org/I2803209242"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"9"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9761999845504761,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.968500018119812,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.6567582488059998},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5654852390289307},{"id":"https://openalex.org/keywords/wildlife","display_name":"Wildlife","score":0.4776141345500946},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3894020915031433},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19921806454658508},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.18825560808181763},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.18516692519187927},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08600243926048279}],"concepts":[{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.6567582488059998},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5654852390289307},{"id":"https://openalex.org/C29376679","wikidata":"https://www.wikidata.org/wiki/Q241741","display_name":"Wildlife","level":2,"score":0.4776141345500946},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3894020915031433},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19921806454658508},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.18825560808181763},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.18516692519187927},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08600243926048279},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/3400302.3415724","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3400302.3415724","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3400302.3415724","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 39th International Conference on Computer-Aided Design","raw_type":"proceedings-article"},{"id":"pmh:oai:repository.hkust.edu.hk:1783.1-133032","is_oa":false,"landing_page_url":"https://repository.hkust.edu.hk/ir/Record/1783.1-133032","pdf_url":null,"source":{"id":"https://openalex.org/S4306401796","display_name":"Rare & Special e-Zone (The Hong Kong University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I200769079","host_organization_name":"Hong Kong University of Science and Technology","host_organization_lineage":["https://openalex.org/I200769079"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Conference paper"}],"best_oa_location":{"id":"doi:10.1145/3400302.3415724","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3400302.3415724","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3400302.3415724","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 39th International Conference on Computer-Aided Design","raw_type":"proceedings-article"},"sustainable_development_goals":[{"score":0.7200000286102295,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G1003572525","display_name":"II-New: RICARDO:  Research Infrastructure for Circuit and Architecture Design with Emerging Technologies","funder_award_id":"1730309","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3069263526","display_name":"SHF:SMALL: MECAR: Memory-Centric Architecture to Bridge the Gap Between Computing and Memory","funder_award_id":"1719160","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G801074273","display_name":"XPS: FULL: DSD: Collaborative Research: Parallelizing and Accelerating Metagenomic Applications","funder_award_id":"1533933","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3111918943.pdf","grobid_xml":"https://content.openalex.org/works/W3111918943.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W1976186353","https://openalex.org/W2034861439","https://openalex.org/W2061680337","https://openalex.org/W2064239220","https://openalex.org/W2095076490","https://openalex.org/W2105656684","https://openalex.org/W2123845384","https://openalex.org/W2125266506","https://openalex.org/W2126540423","https://openalex.org/W2156660460","https://openalex.org/W2163584430","https://openalex.org/W2294645180","https://openalex.org/W2577617591","https://openalex.org/W2597444305","https://openalex.org/W2682773473","https://openalex.org/W2731118616","https://openalex.org/W2751800749","https://openalex.org/W2762749859","https://openalex.org/W2765234579","https://openalex.org/W2789784730","https://openalex.org/W2809195560","https://openalex.org/W2901728847","https://openalex.org/W2902483623","https://openalex.org/W2944488594","https://openalex.org/W2976173108","https://openalex.org/W2979823675","https://openalex.org/W3004318991","https://openalex.org/W3008827533","https://openalex.org/W3016903199","https://openalex.org/W4242222372"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2000315402","https://openalex.org/W2361909619","https://openalex.org/W3113123330","https://openalex.org/W2164318214","https://openalex.org/W2799487830","https://openalex.org/W2398337084","https://openalex.org/W2144834373","https://openalex.org/W3085323195","https://openalex.org/W2350223878"],"abstract_inverted_index":{"With":[0],"the":[1,23,29],"ability":[2],"to":[3],"help":[4],"wildlife":[5],"conservation,":[6],"precise":[7],"medical":[8],"care,":[9],"and":[10,18,25],"disease":[11],"understanding,":[12],"genomics":[13,50],"analysis":[14],"is":[15],"becoming":[16],"more":[17],"moe":[19],"important.":[20],"Recently,":[21],"with":[22],"development":[24],"wide":[26],"adoption":[27],"of":[28],"Next-Generation":[30],"Sequencing":[31],"(NGS)":[32],"technology,":[33],"bio-data":[34],"grows":[35],"exponentially,":[36],"putting":[37],"forward":[38],"great":[39],"challenges":[40],"for":[41],"k-mer":[42],"counting":[43],"-":[44],"a":[45],"widely":[46],"used":[47],"application":[48],"in":[49],"analysis.":[51]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":3}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2020-12-21T00:00:00"}
