{"id":"https://openalex.org/W3099993916","doi":"https://doi.org/10.1145/3388440.3414925","title":"RA2Vec","display_name":"RA2Vec","publication_year":2020,"publication_date":"2020-09-21","ids":{"openalex":"https://openalex.org/W3099993916","doi":"https://doi.org/10.1145/3388440.3414925","mag":"3099993916"},"language":"en","primary_location":{"id":"doi:10.1145/3388440.3414925","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3388440.3414925","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 11th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5032355315","display_name":"Yasas Wijesekara","orcid":"https://orcid.org/0000-0002-9955-7735"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Rajitha Yasas Wijesekara","raw_affiliation_strings":["Bioinformatics Centre SPPU, Pune Maharashtra India"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Centre SPPU, Pune Maharashtra India","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068661916","display_name":"Ashwin Lahorkar","orcid":"https://orcid.org/0000-0002-6615-0314"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ashwin Lahorkar","raw_affiliation_strings":["CMS SPPU, Pune Maharashtra India"],"affiliations":[{"raw_affiliation_string":"CMS SPPU, Pune Maharashtra India","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071097808","display_name":"Kunal Rathore","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kunal Rathore","raw_affiliation_strings":["CMS SPPU, Pune Maharashtra India"],"affiliations":[{"raw_affiliation_string":"CMS SPPU, Pune Maharashtra India","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5033381863","display_name":"Jayaraman Valadi","orcid":"https://orcid.org/0000-0003-0185-9039"},"institutions":[{"id":"https://openalex.org/I2802865875","display_name":"Flame University","ror":"https://ror.org/0252mqn49","country_code":"IN","type":"education","lineage":["https://openalex.org/I2802865875"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Jayaraman Valadi","raw_affiliation_strings":["Computer Science, Flame University, Pune Maharashtra India"],"affiliations":[{"raw_affiliation_string":"Computer Science, Flame University, Pune Maharashtra India","institution_ids":["https://openalex.org/I2802865875"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5032355315"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.2486,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.54428695,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"1"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.8234584927558899},{"id":"https://openalex.org/keywords/word-embedding","display_name":"Word embedding","score":0.7081729769706726},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.6783810257911682},{"id":"https://openalex.org/keywords/word","display_name":"Word (group theory)","score":0.6579239964485168},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.609417200088501},{"id":"https://openalex.org/keywords/vector-space","display_name":"Vector space","score":0.6016568541526794},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5722643733024597},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5420734286308289},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4425016939640045},{"id":"https://openalex.org/keywords/feature-vector","display_name":"Feature vector","score":0.4182499349117279},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.39184629917144775},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3420292139053345},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3264576196670532},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3120908737182617},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.11791518330574036},{"id":"https://openalex.org/keywords/pure-mathematics","display_name":"Pure mathematics","score":0.09321731328964233}],"concepts":[{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.8234584927558899},{"id":"https://openalex.org/C2777462759","wikidata":"https://www.wikidata.org/wiki/Q18395344","display_name":"Word embedding","level":3,"score":0.7081729769706726},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.6783810257911682},{"id":"https://openalex.org/C90805587","wikidata":"https://www.wikidata.org/wiki/Q10944557","display_name":"Word (group theory)","level":2,"score":0.6579239964485168},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.609417200088501},{"id":"https://openalex.org/C13336665","wikidata":"https://www.wikidata.org/wiki/Q125977","display_name":"Vector space","level":2,"score":0.6016568541526794},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5722643733024597},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5420734286308289},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4425016939640045},{"id":"https://openalex.org/C83665646","wikidata":"https://www.wikidata.org/wiki/Q42139305","display_name":"Feature vector","level":2,"score":0.4182499349117279},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.39184629917144775},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3420292139053345},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3264576196670532},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3120908737182617},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.11791518330574036},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.09321731328964233},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3388440.3414925","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3388440.3414925","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 11th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.6600000262260437}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":2,"referenced_works":["https://openalex.org/W1501531009","https://openalex.org/W2950133940"],"related_works":["https://openalex.org/W4288407670","https://openalex.org/W947140380","https://openalex.org/W2911655849","https://openalex.org/W4286432911","https://openalex.org/W4230884544","https://openalex.org/W4245453790","https://openalex.org/W3194985222","https://openalex.org/W3216571906","https://openalex.org/W4214830338","https://openalex.org/W2518587255"],"abstract_inverted_index":{"Protein":[0],"Function":[1],"identification":[2],"has":[3,30],"become":[4],"an":[5,51],"important":[6],"task":[7],"due":[8],"to":[9,33,39,78,103,112,184],"a":[10,35],"plethora":[11],"of":[12,21,26,155,163],"new":[13],"genomes":[14],"being":[15],"sequenced.":[16],"Recently,":[17],"distributed":[18,93],"representation":[19,94,143],"[1]":[20],"words":[22,57],"in":[23,50,61],"the":[24,62,66,70,76,164],"form":[25],"continuous":[27],"vector":[28,158],"representations":[29],"been":[31],"found":[32],"be":[34],"very":[36],"efficient":[37],"way":[38],"represent":[40],"semantic/syntactic":[41],"information.":[42],"In":[43,65,83,98],"this":[44,84],"representation,":[45],"each":[46,134],"word":[47,72],"is":[48,73],"embedded":[49],"n-":[52],"dimensional":[53],"space":[54],"with":[55,140],"similar":[56],"having":[58],"proximate":[59],"vectors":[60,129,137,149,172,178],"embedding":[63,128,167,171,177],"space.":[64],"popular":[67],"skip-gram":[68,123],"configuration,":[69],"current":[71],"used":[74],"by":[75,121],"model":[77],"predict":[79],"its":[80],"surrounding":[81],"words.":[82],"work":[85],"we":[86,106],"introduce":[87],"reduced":[88,118,126],"amino":[89],"acid":[90],"alphabets":[91,127],"based,":[92],"for":[95,133,138,152],"protein":[96],"sequences.":[97],"our":[99],"RA2Vec":[100],"(Reduced":[101],"Alphabets":[102],"Vectors)":[104],"implementation":[105],"first":[107],"map":[108],"all":[109],"Swiss-Prot":[110],"sequences":[111,139],"hydropathy":[113],"and":[114,157,173,189],"conformational":[115],"similarity":[116],"based":[117,124,170,176],"form.":[119],"Further,":[120],"employing":[122],"method,":[125],"(RA2Vec)":[130],"were":[131,145,150,179,192],"created":[132,151],"set.":[135],"Embedding":[136],"original":[141,165],"ProtVec":[142,166],"[2]":[144],"also":[146],"created.":[147],"These":[148],"various":[153],"combinations":[154,162],"K-grams":[156],"sizes.":[159],"All":[160],"seven":[161],"vectors,":[168],"Hydropathy":[169],"Conformational":[174],"Similarity":[175],"then":[180],"employed":[181],"as":[182],"input":[183],"Support":[185],"Vector":[186],"Machines":[187],"classifiers":[188],"classification":[190],"models":[191],"built.":[193]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2020-11-23T00:00:00"}