{"id":"https://openalex.org/W3103818952","doi":"https://doi.org/10.1145/3388440.3412428","title":"A Supervised Machine Learning Approach for Distinguishing Between Additive and Replacing Horizontal Gene Transfers","display_name":"A Supervised Machine Learning Approach for Distinguishing Between Additive and Replacing Horizontal Gene Transfers","publication_year":2020,"publication_date":"2020-09-21","ids":{"openalex":"https://openalex.org/W3103818952","doi":"https://doi.org/10.1145/3388440.3412428","mag":"3103818952"},"language":"en","primary_location":{"id":"doi:10.1145/3388440.3412428","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3388440.3412428","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 11th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101776112","display_name":"Abhijit Mondal","orcid":"https://orcid.org/0009-0009-4846-836X"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Abhijit Mondal","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Connecticut, Storrs, CT, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Connecticut, Storrs, CT, USA","institution_ids":["https://openalex.org/I140172145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069474325","display_name":"Misagh Kordi","orcid":null},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]},{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Misagh Kordi","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Connecticut, Storrs, CT, USA and Department of Computer Science at University of California, Los Angeles"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Connecticut, Storrs, CT, USA and Department of Computer Science at University of California, Los Angeles","institution_ids":["https://openalex.org/I140172145","https://openalex.org/I161318765"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024793976","display_name":"Mukul S. Bansal","orcid":"https://orcid.org/0000-0003-0039-2596"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mukul S. Bansal","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Connecticut, Storrs, CT, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Connecticut, Storrs, CT, USA","institution_ids":["https://openalex.org/I140172145"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5101776112"],"corresponding_institution_ids":["https://openalex.org/I140172145"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.10973284,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"11"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9858999848365784,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9778000116348267,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/horizontal-gene-transfer","display_name":"Horizontal gene transfer","score":0.9063386917114258},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6592708230018616},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6172193288803101},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5301036834716797},{"id":"https://openalex.org/keywords/gene-transfer","display_name":"Gene transfer","score":0.527982771396637},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4726007580757141},{"id":"https://openalex.org/keywords/homologous-chromosome","display_name":"Homologous chromosome","score":0.4103431701660156},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3994782567024231},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3933654725551605},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.36353591084480286}],"concepts":[{"id":"https://openalex.org/C92938381","wikidata":"https://www.wikidata.org/wiki/Q83185","display_name":"Horizontal gene transfer","level":4,"score":0.9063386917114258},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6592708230018616},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6172193288803101},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5301036834716797},{"id":"https://openalex.org/C3018928802","wikidata":"https://www.wikidata.org/wiki/Q83185","display_name":"Gene transfer","level":3,"score":0.527982771396637},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4726007580757141},{"id":"https://openalex.org/C64894306","wikidata":"https://www.wikidata.org/wiki/Q849622","display_name":"Homologous chromosome","level":3,"score":0.4103431701660156},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3994782567024231},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3933654725551605},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.36353591084480286}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3388440.3412428","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3388440.3412428","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 11th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5201673445","display_name":null,"funder_award_id":"1616514","funder_id":"https://openalex.org/F4320309085","funder_display_name":"Center for Selective C-H Functionalization, National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320309085","display_name":"Center for Selective C-H Functionalization, National Science Foundation","ror":"https://ror.org/02h8v7m77"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":27,"referenced_works":["https://openalex.org/W1728842521","https://openalex.org/W1910657848","https://openalex.org/W2017669815","https://openalex.org/W2090916413","https://openalex.org/W2096789062","https://openalex.org/W2110014387","https://openalex.org/W2112755610","https://openalex.org/W2121166240","https://openalex.org/W2132318428","https://openalex.org/W2132553324","https://openalex.org/W2135894797","https://openalex.org/W2138113680","https://openalex.org/W2138882560","https://openalex.org/W2144345157","https://openalex.org/W2147428165","https://openalex.org/W2148231054","https://openalex.org/W2149582283","https://openalex.org/W2149681675","https://openalex.org/W2159545652","https://openalex.org/W2287141830","https://openalex.org/W2620962860","https://openalex.org/W2799551362","https://openalex.org/W2911954305","https://openalex.org/W2914560485","https://openalex.org/W2972421638","https://openalex.org/W2991771055","https://openalex.org/W3099842447"],"related_works":["https://openalex.org/W2264917134","https://openalex.org/W2505308311","https://openalex.org/W4249861864","https://openalex.org/W3149326312","https://openalex.org/W1833347391","https://openalex.org/W3138193881","https://openalex.org/W2972620994","https://openalex.org/W2401034103","https://openalex.org/W3016599224","https://openalex.org/W147606484"],"abstract_inverted_index":{"Horizontal":[0],"gene":[1,12,27,46,52],"transfer":[2,28],"is":[3],"one":[4],"of":[5,10,25],"the":[6,44,54],"most":[7],"important":[8],"drivers":[9],"microbial":[11,21],"and":[13],"genome":[14,56],"evolution.":[15],"Despite":[16],"its":[17],"central":[18],"role":[19],"in":[20,53],"evolution,":[22],"several":[23],"aspects":[24],"horizontal":[26],"remain":[29],"poorly":[30],"understood.":[31],"In":[32],"particular,":[33],"transfers":[34,78],"can":[35],"be":[36],"either":[37],"additive":[38,81],"or":[39,57,82],"replacing":[40],"depending":[41],"on":[42],"whether":[43],"transferred":[45],"adds":[47],"itself":[48],"as":[49,79],"a":[50],"new":[51],"recipient":[55],"replaces":[58],"an":[59],"existing":[60],"homologous":[61],"gene.":[62],"However,":[63],"despite":[64],"recent":[65],"efforts,":[66],"there":[67],"do":[68],"not":[69],"yet":[70],"exist":[71],"effective":[72],"computational":[73],"approaches":[74],"for":[75],"classifying":[76],"inferred":[77],"being":[80],"replacing.":[83]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}