{"id":"https://openalex.org/W3086981431","doi":"https://doi.org/10.1145/3388440.3412417","title":"Ir-Man","display_name":"Ir-Man","publication_year":2020,"publication_date":"2020-09-21","ids":{"openalex":"https://openalex.org/W3086981431","doi":"https://doi.org/10.1145/3388440.3412417","mag":"3086981431"},"language":"en","primary_location":{"id":"doi:10.1145/3388440.3412417","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3388440.3412417","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 11th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://dspace.stir.ac.uk/bitstream/1893/31540/1/acm_bcb_2020.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017160495","display_name":"Alexander F. B. Carmichael","orcid":null},"institutions":[{"id":"https://openalex.org/I12093191","display_name":"University of Stirling","ror":"https://ror.org/045wgfr59","country_code":"GB","type":"education","lineage":["https://openalex.org/I12093191"]},{"id":"https://openalex.org/I260719752","display_name":"Scotland's Rural College","ror":"https://ror.org/044e2ja82","country_code":"GB","type":"education","lineage":["https://openalex.org/I260719752"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Alexander F. B. Carmichael","raw_affiliation_strings":["Computing Science and Mathematics, University of Stirling, Stirling, UK and Epidemiology Research Unit, Scotland's Rural College (SRUC)"],"affiliations":[{"raw_affiliation_string":"Computing Science and Mathematics, University of Stirling, Stirling, UK and Epidemiology Research Unit, Scotland's Rural College (SRUC)","institution_ids":["https://openalex.org/I260719752","https://openalex.org/I12093191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088113932","display_name":"Deepayan Bhowmik","orcid":"https://orcid.org/0000-0003-1762-1578"},"institutions":[{"id":"https://openalex.org/I12093191","display_name":"University of Stirling","ror":"https://ror.org/045wgfr59","country_code":"GB","type":"education","lineage":["https://openalex.org/I12093191"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Deepayan Bhowmik","raw_affiliation_strings":["Computing Science and Mathematics, University of Stirling, Stirling, UK"],"affiliations":[{"raw_affiliation_string":"Computing Science and Mathematics, University of Stirling, Stirling, UK","institution_ids":["https://openalex.org/I12093191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076399259","display_name":"Johanna L. Baily","orcid":"https://orcid.org/0000-0002-2242-7078"},"institutions":[{"id":"https://openalex.org/I12093191","display_name":"University of Stirling","ror":"https://ror.org/045wgfr59","country_code":"GB","type":"education","lineage":["https://openalex.org/I12093191"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Johanna Baily","raw_affiliation_strings":["Institute of Aquaculture, University of Stirling, Stirling, UK"],"affiliations":[{"raw_affiliation_string":"Institute of Aquaculture, University of Stirling, Stirling, UK","institution_ids":["https://openalex.org/I12093191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077143069","display_name":"Andrew Brownlow","orcid":"https://orcid.org/0000-0001-9885-7480"},"institutions":[{"id":"https://openalex.org/I260719752","display_name":"Scotland's Rural College","ror":"https://ror.org/044e2ja82","country_code":"GB","type":"education","lineage":["https://openalex.org/I260719752"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andrew Brownlow","raw_affiliation_strings":["Scottish Marine Animal Stranding Scheme, Scotland's Rural College (SRUC), Inverness, UK"],"affiliations":[{"raw_affiliation_string":"Scottish Marine Animal Stranding Scheme, Scotland's Rural College (SRUC), Inverness, UK","institution_ids":["https://openalex.org/I260719752"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110738418","display_name":"George J. Gunn","orcid":null},"institutions":[{"id":"https://openalex.org/I260719752","display_name":"Scotland's Rural College","ror":"https://ror.org/044e2ja82","country_code":"GB","type":"education","lineage":["https://openalex.org/I260719752"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"George J. Gunn","raw_affiliation_strings":["Epidemiology Research Unit, Scotland's Rural College (SRUC), Inverness, UK"],"affiliations":[{"raw_affiliation_string":"Epidemiology Research Unit, Scotland's Rural College (SRUC), Inverness, UK","institution_ids":["https://openalex.org/I260719752"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010808248","display_name":"Aaron Reeves","orcid":"https://orcid.org/0000-0001-6387-7481"},"institutions":[{"id":"https://openalex.org/I260719752","display_name":"Scotland's Rural College","ror":"https://ror.org/044e2ja82","country_code":"GB","type":"education","lineage":["https://openalex.org/I260719752"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Aaron Reeves","raw_affiliation_strings":["Epidemiology Research Unit, Scotland's Rural College (SRUC), Inverness, UK"],"affiliations":[{"raw_affiliation_string":"Epidemiology Research Unit, Scotland's Rural College (SRUC), Inverness, UK","institution_ids":["https://openalex.org/I260719752"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5017160495"],"corresponding_institution_ids":["https://openalex.org/I12093191","https://openalex.org/I260719752"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.08818393,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"9"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12388","display_name":"Identification and Quantification in Food","score":0.9732000231742859,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/marine-mammal","display_name":"Marine mammal","score":0.7260691523551941},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6970424652099609},{"id":"https://openalex.org/keywords/porpoise","display_name":"Porpoise","score":0.6795773506164551},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4537031352519989},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.4517008662223816},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.42420071363449097},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.3535829782485962},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2114141285419464},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1974811553955078},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.1947413980960846},{"id":"https://openalex.org/keywords/harbour","display_name":"Harbour","score":0.16899242997169495}],"concepts":[{"id":"https://openalex.org/C2776384079","wikidata":"https://www.wikidata.org/wiki/Q382441","display_name":"Marine mammal","level":2,"score":0.7260691523551941},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6970424652099609},{"id":"https://openalex.org/C2779918970","wikidata":"https://www.wikidata.org/wiki/Q10867","display_name":"Porpoise","level":3,"score":0.6795773506164551},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4537031352519989},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.4517008662223816},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.42420071363449097},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.3535829782485962},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2114141285419464},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1974811553955078},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.1947413980960846},{"id":"https://openalex.org/C2777318892","wikidata":"https://www.wikidata.org/wiki/Q2544816","display_name":"Harbour","level":2,"score":0.16899242997169495},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1145/3388440.3412417","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3388440.3412417","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 11th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"},{"id":"pmh:oai:dspace.stir.ac.uk:1893/31540","is_oa":true,"landing_page_url":"http://hdl.handle.net/1893/31540","pdf_url":"http://dspace.stir.ac.uk/bitstream/1893/31540/1/acm_bcb_2020.pdf","source":{"id":"https://openalex.org/S4306400268","display_name":"Stirling Online Research Repository (University of Stirling)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I12093191","host_organization_name":"University of Stirling","host_organization_lineage":["https://openalex.org/I12093191"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference Paper"},{"id":"pmh:oai:dspace.stir.ac.uk:1893/36027","is_oa":false,"landing_page_url":"http://hdl.handle.net/1893/36027","pdf_url":null,"source":{"id":"https://openalex.org/S4306400268","display_name":"Stirling Online Research Repository (University of Stirling)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I12093191","host_organization_name":"University of Stirling","host_organization_lineage":["https://openalex.org/I12093191"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Thesis or Dissertation"},{"id":"pmh:oai:eprints.gla.ac.uk:270808","is_oa":true,"landing_page_url":"https://eprints.gla.ac.uk/270808/","pdf_url":null,"source":{"id":"https://openalex.org/S4210235606","display_name":"ENLIGHTEN (Jurnal Bimbingan dan Konseling Islam)","issn_l":"2622-8912","issn":["2622-8912","2622-8920"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"PeerReviewed"}],"best_oa_location":{"id":"pmh:oai:dspace.stir.ac.uk:1893/31540","is_oa":true,"landing_page_url":"http://hdl.handle.net/1893/31540","pdf_url":"http://dspace.stir.ac.uk/bitstream/1893/31540/1/acm_bcb_2020.pdf","source":{"id":"https://openalex.org/S4306400268","display_name":"Stirling Online Research Repository (University of Stirling)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I12093191","host_organization_name":"University of Stirling","host_organization_lineage":["https://openalex.org/I12093191"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference Paper"},"sustainable_development_goals":[{"score":0.8899999856948853,"display_name":"Life below water","id":"https://metadata.un.org/sdg/14"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321096","display_name":"University of Stirling","ror":"https://ror.org/045wgfr59"},{"id":"https://openalex.org/F4320329383","display_name":"Scotland\u2019s Rural College","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3086981431.pdf","grobid_xml":"https://content.openalex.org/works/W3086981431.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W1534055789","https://openalex.org/W1964986019","https://openalex.org/W2024820855","https://openalex.org/W2061341882","https://openalex.org/W2092539322","https://openalex.org/W2116034137","https://openalex.org/W2139865360","https://openalex.org/W2143017621","https://openalex.org/W2153771335","https://openalex.org/W2159583324","https://openalex.org/W2187363965","https://openalex.org/W2240255950","https://openalex.org/W2292944448","https://openalex.org/W2400317275","https://openalex.org/W2534573546","https://openalex.org/W2787171079","https://openalex.org/W2808784083","https://openalex.org/W2888296742","https://openalex.org/W2912921486","https://openalex.org/W2948614377","https://openalex.org/W2948909602","https://openalex.org/W2972650346","https://openalex.org/W2987535891","https://openalex.org/W3004032245","https://openalex.org/W3005009871","https://openalex.org/W4240541820"],"related_works":["https://openalex.org/W2329380159","https://openalex.org/W4237407979","https://openalex.org/W4382462938","https://openalex.org/W2742642870","https://openalex.org/W4230676487","https://openalex.org/W4401585561","https://openalex.org/W2587779094","https://openalex.org/W4390884064","https://openalex.org/W2009986457","https://openalex.org/W2626408607"],"abstract_inverted_index":{"This":[0,55],"paper":[1],"proposes":[2],"Ir-Man":[3,161],"(Information":[4],"Retrieval":[5],"for":[6,12,21,139,180,205],"Marine":[7,42],"Animal":[8,43],"Necropsies),":[9],"a":[10,25,60,99,137,147,165,168,187,201],"framework":[11,162,198],"retrieving":[13],"discrete":[14],"information":[15,142,181],"from":[16,186],"marine":[17,26],"mammal":[18,27],"post-mortem":[19],"reports":[20,72,216],"statistical":[22],"analysis.":[23],"When":[24],"is":[28,37,103,127,136,146],"reported":[29],"dead":[30],"after":[31],"stranding":[32],"in":[33,211],"Scotland,":[34],"the":[35,40,49,52,57,68,151,194],"carcass":[36],"examined":[38],"by":[39,199],"Scottish":[41],"Strandings":[44],"Scheme":[45],"(SMASS)":[46],"to":[47,78,93],"establish":[48],"circumstances":[50],"of":[51,59,96,101,111,124,154,164,170,189,196,221],"animal's":[53],"death.":[54,97],"involves":[56],"creation":[58],"\"post-mortem\"":[61],"(or":[62],"necropsy)":[63],"report,":[64],"which":[65,145],"systematically":[66],"describes":[67],"body.":[69],"These":[70],"semi-structured":[71],"record":[73],"lesions":[74],"(damage":[75],"or":[76],"abnormalities":[77],"anatomical":[79,173],"regions)":[80],"as":[81,83],"well":[82],"other":[84,107],"observations.":[85],"Observations":[86],"embedded":[87],"within":[88],"these":[89,125],"texts":[90],"are":[91],"used":[92],"determine":[94],"cause":[95,100],"While":[98],"death":[102],"recorded":[104],"separately,":[105],"many":[106],"descriptions":[108,126],"may":[109],"be":[110],"pathological":[112],"and":[113,118,131,158,172,175,183,217],"epidemiological":[114],"significance":[115],"when":[116],"aggregated":[117],"analysed":[119],"collectively.":[120],"As":[121],"manual":[122],"extraction":[123],"costly,":[128],"time":[129],"consuming":[130],"at":[132],"times":[133],"erroneous,":[134],"there":[135],"need":[138],"an":[140,176,219],"automated":[141],"retrieval":[143,182],"mechanism":[144],"non-trivial":[148],"task":[149],"given":[150],"wide":[152],"variety":[153],"possible":[155],"descriptions,":[156],"pathologies":[157],"species.":[159],"The":[160],"consists":[163],"new":[166],"ontology,":[167],"lexicon":[169],"observations":[171],"terms":[174],"entity":[177],"relation":[178],"engine":[179],"statistics":[184],"generation":[185],"pool":[188],"necropsy":[190],"reports.":[191],"We":[192],"demonstrate":[193],"effectiveness":[195],"our":[197],"creating":[200],"rule-based":[202],"binary":[203],"classifier":[204],"identifying":[206],"bottlenose":[207],"dolphin":[208],"attacks":[209],"(BDA)":[210],"harbour":[212],"porpoise":[213],"gross":[214],"pathology":[215],"achieved":[218],"accuracy":[220],"83.4%.":[222]},"counts_by_year":[],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2020-09-21T00:00:00"}
