{"id":"https://openalex.org/W3083734001","doi":"https://doi.org/10.1145/3386263.3407590","title":"Exploring DNA Alignment-in-Memory Leveraging Emerging SOT-MRAM","display_name":"Exploring DNA Alignment-in-Memory Leveraging Emerging SOT-MRAM","publication_year":2020,"publication_date":"2020-09-04","ids":{"openalex":"https://openalex.org/W3083734001","doi":"https://doi.org/10.1145/3386263.3407590","mag":"3083734001"},"language":"en","primary_location":{"id":"doi:10.1145/3386263.3407590","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3386263.3407590","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2020 on Great Lakes Symposium on VLSI","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051680668","display_name":"Shaahin Angizi","orcid":"https://orcid.org/0000-0003-2289-6381"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shaahin Angizi","raw_affiliation_strings":["Arizona State University, Phoenix, AZ, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Arizona State University, Phoenix, AZ, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100441789","display_name":"Wei Zhang","orcid":"https://orcid.org/0000-0003-3605-9373"},"institutions":[{"id":"https://openalex.org/I106165777","display_name":"University of Central Florida","ror":"https://ror.org/036nfer12","country_code":"US","type":"education","lineage":["https://openalex.org/I106165777"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wei Zhang","raw_affiliation_strings":["University of Central Florida, Orlando, FL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Central Florida, Orlando, FL, USA","institution_ids":["https://openalex.org/I106165777"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5047916979","display_name":"Deliang Fan","orcid":"https://orcid.org/0000-0002-7989-6297"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Deliang Fan","raw_affiliation_strings":["Arizona State University, Phoenix, AZ, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Arizona State University, Phoenix, AZ, USA","institution_ids":["https://openalex.org/I55732556"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.9738,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.75524965,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"277","last_page":"282"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10049","display_name":"Magnetic properties of thin films","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/3107","display_name":"Atomic and Molecular Physics, and Optics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10049","display_name":"Magnetic properties of thin films","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/3107","display_name":"Atomic and Molecular Physics, and Optics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10502","display_name":"Advanced Memory and Neural Computing","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/2208","display_name":"Electrical and Electronic Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9894999861717224,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/magnetoresistive-random-access-memory","display_name":"Magnetoresistive random-access memory","score":0.8424389362335205},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7737677097320557},{"id":"https://openalex.org/keywords/application-specific-integrated-circuit","display_name":"Application-specific integrated circuit","score":0.5618513822555542},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.559135377407074},{"id":"https://openalex.org/keywords/random-access-memory","display_name":"Random access memory","score":0.5272558927536011},{"id":"https://openalex.org/keywords/memory-management","display_name":"Memory management","score":0.4921078085899353},{"id":"https://openalex.org/keywords/computer-hardware","display_name":"Computer hardware","score":0.47917118668556213},{"id":"https://openalex.org/keywords/resistive-random-access-memory","display_name":"Resistive random-access memory","score":0.41953879594802856},{"id":"https://openalex.org/keywords/computer-architecture","display_name":"Computer architecture","score":0.3877406120300293},{"id":"https://openalex.org/keywords/computer-engineering","display_name":"Computer engineering","score":0.3559679388999939},{"id":"https://openalex.org/keywords/semiconductor-memory","display_name":"Semiconductor memory","score":0.24555766582489014},{"id":"https://openalex.org/keywords/electrical-engineering","display_name":"Electrical engineering","score":0.11145466566085815},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.08873555064201355}],"concepts":[{"id":"https://openalex.org/C46891859","wikidata":"https://www.wikidata.org/wiki/Q1061546","display_name":"Magnetoresistive random-access memory","level":3,"score":0.8424389362335205},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7737677097320557},{"id":"https://openalex.org/C77390884","wikidata":"https://www.wikidata.org/wiki/Q217302","display_name":"Application-specific integrated circuit","level":2,"score":0.5618513822555542},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.559135377407074},{"id":"https://openalex.org/C2994168587","wikidata":"https://www.wikidata.org/wiki/Q5295","display_name":"Random access memory","level":2,"score":0.5272558927536011},{"id":"https://openalex.org/C176649486","wikidata":"https://www.wikidata.org/wiki/Q2308807","display_name":"Memory management","level":3,"score":0.4921078085899353},{"id":"https://openalex.org/C9390403","wikidata":"https://www.wikidata.org/wiki/Q3966","display_name":"Computer hardware","level":1,"score":0.47917118668556213},{"id":"https://openalex.org/C182019814","wikidata":"https://www.wikidata.org/wiki/Q1143830","display_name":"Resistive random-access memory","level":3,"score":0.41953879594802856},{"id":"https://openalex.org/C118524514","wikidata":"https://www.wikidata.org/wiki/Q173212","display_name":"Computer architecture","level":1,"score":0.3877406120300293},{"id":"https://openalex.org/C113775141","wikidata":"https://www.wikidata.org/wiki/Q428691","display_name":"Computer engineering","level":1,"score":0.3559679388999939},{"id":"https://openalex.org/C98986596","wikidata":"https://www.wikidata.org/wiki/Q1143031","display_name":"Semiconductor memory","level":2,"score":0.24555766582489014},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.11145466566085815},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.08873555064201355},{"id":"https://openalex.org/C165801399","wikidata":"https://www.wikidata.org/wiki/Q25428","display_name":"Voltage","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3386263.3407590","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3386263.3407590","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2020 on Great Lakes Symposium on VLSI","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":33,"referenced_works":["https://openalex.org/W2010202670","https://openalex.org/W2015831381","https://openalex.org/W2020704360","https://openalex.org/W2093931624","https://openalex.org/W2103441770","https://openalex.org/W2124985265","https://openalex.org/W2128830021","https://openalex.org/W2143171378","https://openalex.org/W2152142824","https://openalex.org/W2157539385","https://openalex.org/W2214682759","https://openalex.org/W2330100020","https://openalex.org/W2396622873","https://openalex.org/W2526975281","https://openalex.org/W2577617591","https://openalex.org/W2593693565","https://openalex.org/W2738393257","https://openalex.org/W2755757278","https://openalex.org/W2765884744","https://openalex.org/W2793867693","https://openalex.org/W2809295488","https://openalex.org/W2870561134","https://openalex.org/W2933452742","https://openalex.org/W2937557308","https://openalex.org/W2946017187","https://openalex.org/W2946571646","https://openalex.org/W2965566614","https://openalex.org/W2997176513","https://openalex.org/W3016287095","https://openalex.org/W3036029011","https://openalex.org/W4242222372","https://openalex.org/W4245700406","https://openalex.org/W7018628422"],"related_works":["https://openalex.org/W2002108625","https://openalex.org/W2375427054","https://openalex.org/W2020622255","https://openalex.org/W2065076119","https://openalex.org/W2054635671","https://openalex.org/W4312727691","https://openalex.org/W2588373136","https://openalex.org/W2791102142","https://openalex.org/W2163958441","https://openalex.org/W2088897617"],"abstract_inverted_index":{"In":[0],"this":[1],"work,":[2],"we":[3],"review":[4],"two":[5,70],"alternative":[6],"Processing-in-Memory":[7],"(PIM)":[8],"accelerators":[9],"based":[10,24,43],"on":[11,25,44],"Spin-Orbit-Torque":[12],"Magnetic":[13],"Random":[14],"Access":[15],"Memory":[16],"(SOT-MRAM)":[17],"to":[18,63,75,92],"execute":[19],"DNA":[20],"short":[21],"read":[22],"alignment":[23,30,41],"an":[26],"optimized":[27],"and":[28,46,97,107],"hardware-friendly":[29],"algorithm.":[31,80],"We":[32,58],"first":[33],"discuss":[34],"the":[35,38,77],"reconstruction":[36],"of":[37],"existing":[39],"sequence":[40],"algorithm":[42],"BWT":[45],"FM-index":[47],"such":[48,87],"that":[49,86],"it":[50],"can":[51],"be":[52],"fully":[53],"implemented":[54],"leveraging":[55],"PIM":[56,88],"functions.":[57],"then":[59],"transform":[60],"SOT-MRAM":[61],"array":[62],"a":[64,94],"potential":[65],"computational":[66],"memory":[67],"by":[68],"presenting":[69],"different":[71],"reconfigurable":[72],"sense":[73],"amplifiers":[74],"accelerate":[76],"reconstructed":[78],"alignment-in-memory":[79],"The":[81],"cross-layer":[82],"simulation":[83],"results":[84],"show":[85],"platforms":[89],"are":[90],"able":[91],"achieve":[93],"nearly":[95],"ten-fold":[96],"two-fold":[98],"increases":[99],"in":[100],"throughput/power/area":[101],"measure":[102],"compared":[103],"with":[104],"recent":[105],"ASIC":[106],"processing-in-ReRAM":[108],"designs,":[109],"respectively.":[110]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":4}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}