{"id":"https://openalex.org/W3033932289","doi":"https://doi.org/10.1145/3385209.3385223","title":"Hardware-assisted High-performance DNA Alignment System","display_name":"Hardware-assisted High-performance DNA Alignment System","publication_year":2020,"publication_date":"2020-02-19","ids":{"openalex":"https://openalex.org/W3033932289","doi":"https://doi.org/10.1145/3385209.3385223","mag":"3033932289"},"language":"en","primary_location":{"id":"doi:10.1145/3385209.3385223","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3385209.3385223","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2020 5th International Conference on Intelligent Information Technology","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052625146","display_name":"Binh Kieu-Do-Nguyen","orcid":"https://orcid.org/0000-0001-7240-7203"},"institutions":[{"id":"https://openalex.org/I47265099","display_name":"Ho Chi Minh City University of Technology","ror":"https://ror.org/04qva2324","country_code":"VN","type":"education","lineage":["https://openalex.org/I123565023","https://openalex.org/I47265099"]},{"id":"https://openalex.org/I123565023","display_name":"Vietnam National University Ho Chi Minh City","ror":"https://ror.org/00waaqh38","country_code":"VN","type":"education","lineage":["https://openalex.org/I123565023"]}],"countries":["VN"],"is_corresponding":true,"raw_author_name":"Binh Kieu-Do-Nguyen","raw_affiliation_strings":["Ho Chi Minh City University of Technology - VNUHCM, Ho Chi Minh City, Viet Nam"],"affiliations":[{"raw_affiliation_string":"Ho Chi Minh City University of Technology - VNUHCM, Ho Chi Minh City, Viet Nam","institution_ids":["https://openalex.org/I47265099","https://openalex.org/I123565023"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074161542","display_name":"Cuong Pham\u2010Quoc","orcid":"https://orcid.org/0000-0003-2917-1244"},"institutions":[{"id":"https://openalex.org/I47265099","display_name":"Ho Chi Minh City University of Technology","ror":"https://ror.org/04qva2324","country_code":"VN","type":"education","lineage":["https://openalex.org/I123565023","https://openalex.org/I47265099"]},{"id":"https://openalex.org/I123565023","display_name":"Vietnam National University Ho Chi Minh City","ror":"https://ror.org/00waaqh38","country_code":"VN","type":"education","lineage":["https://openalex.org/I123565023"]}],"countries":["VN"],"is_corresponding":false,"raw_author_name":"Cuong Pham-Quoc","raw_affiliation_strings":["Ho Chi Minh City University of Technology - VNUHCM, Ho Chi Minh City, Viet Nam"],"affiliations":[{"raw_affiliation_string":"Ho Chi Minh City University of Technology - VNUHCM, Ho Chi Minh City, Viet Nam","institution_ids":["https://openalex.org/I47265099","https://openalex.org/I123565023"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042912660","display_name":"Cong\u2010Kha Pham","orcid":"https://orcid.org/0000-0001-5255-4919"},"institutions":[{"id":"https://openalex.org/I20529979","display_name":"University of Electro-Communications","ror":"https://ror.org/02x73b849","country_code":"JP","type":"education","lineage":["https://openalex.org/I20529979"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Cong-Kha Pham","raw_affiliation_strings":["University of Electro-Communication, Tokyo, Japan"],"affiliations":[{"raw_affiliation_string":"University of Electro-Communication, Tokyo, Japan","institution_ids":["https://openalex.org/I20529979"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5052625146"],"corresponding_institution_ids":["https://openalex.org/I123565023","https://openalex.org/I47265099"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.05186435,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"2012","issue":null,"first_page":"45","last_page":"50"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.989799976348877,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7296087741851807},{"id":"https://openalex.org/keywords/protocol","display_name":"Protocol (science)","score":0.5072038173675537},{"id":"https://openalex.org/keywords/architecture","display_name":"Architecture","score":0.4652674198150635},{"id":"https://openalex.org/keywords/state","display_name":"State (computer science)","score":0.4427906274795532},{"id":"https://openalex.org/keywords/ideal","display_name":"Ideal (ethics)","score":0.44165632128715515},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.4371400773525238},{"id":"https://openalex.org/keywords/computer-architecture","display_name":"Computer architecture","score":0.40431588888168335},{"id":"https://openalex.org/keywords/embedded-system","display_name":"Embedded system","score":0.3986334502696991},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.2048080861568451}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7296087741851807},{"id":"https://openalex.org/C2780385302","wikidata":"https://www.wikidata.org/wiki/Q367158","display_name":"Protocol (science)","level":3,"score":0.5072038173675537},{"id":"https://openalex.org/C123657996","wikidata":"https://www.wikidata.org/wiki/Q12271","display_name":"Architecture","level":2,"score":0.4652674198150635},{"id":"https://openalex.org/C48103436","wikidata":"https://www.wikidata.org/wiki/Q599031","display_name":"State (computer science)","level":2,"score":0.4427906274795532},{"id":"https://openalex.org/C2776639384","wikidata":"https://www.wikidata.org/wiki/Q840396","display_name":"Ideal (ethics)","level":2,"score":0.44165632128715515},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.4371400773525238},{"id":"https://openalex.org/C118524514","wikidata":"https://www.wikidata.org/wiki/Q173212","display_name":"Computer architecture","level":1,"score":0.40431588888168335},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.3986334502696991},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.2048080861568451},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3385209.3385223","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3385209.3385223","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2020 5th International Conference on Intelligent Information Technology","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.44999998807907104,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":12,"referenced_works":["https://openalex.org/W1573552135","https://openalex.org/W2014707208","https://openalex.org/W2052601433","https://openalex.org/W2087064593","https://openalex.org/W2095680943","https://openalex.org/W2097341408","https://openalex.org/W2124985265","https://openalex.org/W2218392081","https://openalex.org/W2908267306","https://openalex.org/W2944735424","https://openalex.org/W4241026011","https://openalex.org/W6959643953"],"related_works":["https://openalex.org/W2590472383","https://openalex.org/W2383873009","https://openalex.org/W2393580911","https://openalex.org/W2212184297","https://openalex.org/W3156456913","https://openalex.org/W2390945180","https://openalex.org/W2394052932","https://openalex.org/W2350360626","https://openalex.org/W2737552886","https://openalex.org/W2038503502"],"abstract_inverted_index":{"The":[0,134],"investigations":[1],"of":[2,14,37,56,63,131],"DNA":[3,77],"become":[4],"more":[5,7,73],"and":[6,47,61,129],"important":[8,40],"in":[9,86,107,123],"this":[10,28,59,87],"era.":[11],"A":[12],"plethora":[13],"new":[15],"algorithms":[16,57],"that":[17,42,76,102],"were":[18],"published":[19,106],"over":[20],"the":[21,31,38,82,127,132],"last":[22],"decade":[23],"are":[24],"apparent":[25],"evidences":[26],"for":[27,58],"fact.":[29],"In":[30],"DNA's":[32],"researches,":[33],"alignment":[34,78],"is":[35,43,70,95],"one":[36],"most":[39],"steps":[41],"especially":[44],"taken":[45],"care":[46],"continuously":[48],"developed.":[49],"Despite":[50],"they":[51],"already":[52,80,105],"have":[53,104],"a":[54,114,137],"lot":[55],"problem,":[60],"some":[62],"them":[64],"provide":[65],"impressive":[66],"enhancements.":[67],"But":[68],"it":[69],"still":[71],"far":[72],"to":[74,125],"state":[75],"has":[79],"achieved":[81],"ideal":[83],"performance.":[84],"Therefore,":[85],"work,":[88],"we":[89,103,111],"promote":[90],"an":[91],"efficient":[92],"architecture":[93],"which":[94],"based":[96],"on":[97],"our":[98],"improved":[99],"BWA-MEM":[100],"algorithm":[101],"[14].":[108],"Beside":[109],"that,":[110],"also":[112],"propose":[113],"communication":[115],"protocol":[116],"as":[117,119,120],"well":[118],"its":[121],"API":[122],"order":[124],"ensure":[126],"accuracy":[128],"stability":[130],"system.":[133],"system":[135],"offers":[136],"speed-up":[138],"by":[139],"18.14x":[140],"when":[141],"compared":[142],"with":[143],"modern":[144],"computing":[145],"platforms.":[146]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
