{"id":"https://openalex.org/W3032041425","doi":"https://doi.org/10.1145/3383669.3398279","title":"BioSEAL","display_name":"BioSEAL","publication_year":2020,"publication_date":"2020-05-30","ids":{"openalex":"https://openalex.org/W3032041425","doi":"https://doi.org/10.1145/3383669.3398279","mag":"3032041425"},"language":"en","primary_location":{"id":"doi:10.1145/3383669.3398279","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3383669.3398279","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 13th ACM International Systems and Storage Conference","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030934781","display_name":"Roman Kaplan","orcid":"https://orcid.org/0000-0003-3722-0739"},"institutions":[{"id":"https://openalex.org/I174306211","display_name":"Technion \u2013 Israel Institute of Technology","ror":"https://ror.org/03qryx823","country_code":"IL","type":"education","lineage":["https://openalex.org/I174306211"]}],"countries":["IL"],"is_corresponding":true,"raw_author_name":"Roman Kaplan","raw_affiliation_strings":["Technion, Israel"],"affiliations":[{"raw_affiliation_string":"Technion, Israel","institution_ids":["https://openalex.org/I174306211"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007161424","display_name":"Leonid Yavits","orcid":"https://orcid.org/0000-0001-5248-3997"},"institutions":[{"id":"https://openalex.org/I174306211","display_name":"Technion \u2013 Israel Institute of Technology","ror":"https://ror.org/03qryx823","country_code":"IL","type":"education","lineage":["https://openalex.org/I174306211"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Leonid Yavits","raw_affiliation_strings":["Technion, Israel"],"affiliations":[{"raw_affiliation_string":"Technion, Israel","institution_ids":["https://openalex.org/I174306211"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003421531","display_name":"Ran Ginosasr","orcid":null},"institutions":[{"id":"https://openalex.org/I174306211","display_name":"Technion \u2013 Israel Institute of Technology","ror":"https://ror.org/03qryx823","country_code":"IL","type":"education","lineage":["https://openalex.org/I174306211"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Ran Ginosasr","raw_affiliation_strings":["Technion, Israel"],"affiliations":[{"raw_affiliation_string":"Technion, Israel","institution_ids":["https://openalex.org/I174306211"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5030934781"],"corresponding_institution_ids":["https://openalex.org/I174306211"],"apc_list":null,"apc_paid":null,"fwci":4.3843,"has_fulltext":false,"cited_by_count":46,"citation_normalized_percentile":{"value":0.95278135,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":null,"issue":null,"first_page":"36","last_page":"48"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7399413585662842},{"id":"https://openalex.org/keywords/parallelism","display_name":"Parallelism (grammar)","score":0.6036806106567383},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.5771679282188416},{"id":"https://openalex.org/keywords/heuristic","display_name":"Heuristic","score":0.5476844906806946},{"id":"https://openalex.org/keywords/dynamic-programming","display_name":"Dynamic programming","score":0.5201038122177124},{"id":"https://openalex.org/keywords/base","display_name":"Base (topology)","score":0.44089215993881226},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.43590247631073},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4240753948688507},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.41983097791671753},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.30007314682006836},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.20519322156906128},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.17945626378059387}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7399413585662842},{"id":"https://openalex.org/C2781172179","wikidata":"https://www.wikidata.org/wiki/Q853109","display_name":"Parallelism (grammar)","level":2,"score":0.6036806106567383},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.5771679282188416},{"id":"https://openalex.org/C173801870","wikidata":"https://www.wikidata.org/wiki/Q201413","display_name":"Heuristic","level":2,"score":0.5476844906806946},{"id":"https://openalex.org/C37404715","wikidata":"https://www.wikidata.org/wiki/Q380679","display_name":"Dynamic programming","level":2,"score":0.5201038122177124},{"id":"https://openalex.org/C42058472","wikidata":"https://www.wikidata.org/wiki/Q810214","display_name":"Base (topology)","level":2,"score":0.44089215993881226},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.43590247631073},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4240753948688507},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.41983097791671753},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.30007314682006836},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.20519322156906128},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.17945626378059387},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3383669.3398279","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3383669.3398279","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 13th ACM International Systems and Storage Conference","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":40,"referenced_works":["https://openalex.org/W1980852206","https://openalex.org/W1999085092","https://openalex.org/W2004823737","https://openalex.org/W2018258488","https://openalex.org/W2020704360","https://openalex.org/W2021342241","https://openalex.org/W2041257508","https://openalex.org/W2052924095","https://openalex.org/W2055043387","https://openalex.org/W2055693471","https://openalex.org/W2062143991","https://openalex.org/W2068448872","https://openalex.org/W2085205847","https://openalex.org/W2087064593","https://openalex.org/W2093931624","https://openalex.org/W2095724872","https://openalex.org/W2107282968","https://openalex.org/W2110256992","https://openalex.org/W2116377941","https://openalex.org/W2138815064","https://openalex.org/W2141459724","https://openalex.org/W2143012946","https://openalex.org/W2143210482","https://openalex.org/W2146396346","https://openalex.org/W2149055332","https://openalex.org/W2149380925","https://openalex.org/W2158714788","https://openalex.org/W2166081493","https://openalex.org/W2184753910","https://openalex.org/W2195783463","https://openalex.org/W2342866599","https://openalex.org/W2344543892","https://openalex.org/W2345906791","https://openalex.org/W2577617591","https://openalex.org/W2600527611","https://openalex.org/W2607159714","https://openalex.org/W2789784730","https://openalex.org/W2790091177","https://openalex.org/W4236504400","https://openalex.org/W4241026011"],"related_works":["https://openalex.org/W2045183646","https://openalex.org/W2162409446","https://openalex.org/W2109463584","https://openalex.org/W2504075107","https://openalex.org/W2354058185","https://openalex.org/W3014500535","https://openalex.org/W2319812372","https://openalex.org/W97761310","https://openalex.org/W1482096554","https://openalex.org/W2370176626"],"abstract_inverted_index":{"Genome":[0],"sequences":[1],"contain":[2],"hundreds":[3],"of":[4,6,13],"millions":[5],"DNA":[7],"base":[8],"pairs.":[9],"Finding":[10],"the":[11],"degree":[12],"similarity":[14],"between":[15],"two":[16],"genomes":[17],"requires":[18],"executing":[19],"a":[20],"compute-intensive":[21],"dynamic":[22],"programming":[23],"algorithm,":[24],"such":[25],"as":[26],"Smith-Waterman.":[27],"Traditional":[28],"von":[29],"Neumann":[30],"architectures":[31],"have":[32],"limited":[33],"parallelism":[34],"and":[35,57],"cannot":[36],"provide":[37],"an":[38],"efficient":[39],"solution":[40],"for":[41],"large-scale":[42],"genomic":[43],"data.":[44],"Approximate":[45],"heuristic":[46],"methods":[47],"(e.g.":[48],"BLAST)":[49],"are":[50,55],"commonly":[51],"used.":[52],"However,":[53],"they":[54],"suboptimal":[56],"still":[58],"compute-intensive.":[59]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":16},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1}],"updated_date":"2026-03-06T13:50:29.536080","created_date":"2020-06-05T00:00:00"}
