{"id":"https://openalex.org/W3000087424","doi":"https://doi.org/10.1145/3371158.3371201","title":"Towards Designing Accurate FISH Probe Detection using 3D U-Nets on Microscopic Blood Cell Images","display_name":"Towards Designing Accurate FISH Probe Detection using 3D U-Nets on Microscopic Blood Cell Images","publication_year":2020,"publication_date":"2020-01-05","ids":{"openalex":"https://openalex.org/W3000087424","doi":"https://doi.org/10.1145/3371158.3371201","mag":"3000087424"},"language":"en","primary_location":{"id":"doi:10.1145/3371158.3371201","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3371158.3371201","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 7th ACM IKDD CoDS and 25th COMAD","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049983581","display_name":"Chinmay Savadikar","orcid":null},"institutions":[{"id":"https://openalex.org/I2800727657","display_name":"Persistent Systems (India)","ror":"https://ror.org/03pekdw43","country_code":"IN","type":"education","lineage":["https://openalex.org/I2800727657"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Chinmay Savadikar","raw_affiliation_strings":["Persistent Systems Ltd., Pune, India"],"affiliations":[{"raw_affiliation_string":"Persistent Systems Ltd., Pune, India","institution_ids":["https://openalex.org/I2800727657"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071296462","display_name":"Shahram Tahvilian","orcid":null},"institutions":[{"id":"https://openalex.org/I4210101325","display_name":"LungLife AI (United States)","ror":"https://ror.org/01ecs7r71","country_code":"US","type":"company","lineage":["https://openalex.org/I4210101325"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shahram Tahvilian","raw_affiliation_strings":["LungLifeAI, Thousand Oaks, California, USA"],"affiliations":[{"raw_affiliation_string":"LungLifeAI, Thousand Oaks, California, USA","institution_ids":["https://openalex.org/I4210101325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067968996","display_name":"Lara Baden","orcid":null},"institutions":[{"id":"https://openalex.org/I4210101325","display_name":"LungLife AI (United States)","ror":"https://ror.org/01ecs7r71","country_code":"US","type":"company","lineage":["https://openalex.org/I4210101325"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lara Baden","raw_affiliation_strings":["LungLifeAI, Thousand Oaks, California, USA"],"affiliations":[{"raw_affiliation_string":"LungLifeAI, Thousand Oaks, California, USA","institution_ids":["https://openalex.org/I4210101325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003931988","display_name":"Rebecca Reed","orcid":null},"institutions":[{"id":"https://openalex.org/I4210101325","display_name":"LungLife AI (United States)","ror":"https://ror.org/01ecs7r71","country_code":"US","type":"company","lineage":["https://openalex.org/I4210101325"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rebecca Reed","raw_affiliation_strings":["LungLifeAI, Thousand Oaks, California, USA"],"affiliations":[{"raw_affiliation_string":"LungLifeAI, Thousand Oaks, California, USA","institution_ids":["https://openalex.org/I4210101325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025533187","display_name":"Daniel Leventon","orcid":null},"institutions":[{"id":"https://openalex.org/I4210101325","display_name":"LungLife AI (United States)","ror":"https://ror.org/01ecs7r71","country_code":"US","type":"company","lineage":["https://openalex.org/I4210101325"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel Leventon","raw_affiliation_strings":["LungLifeAI, Thousand Oaks, California, USA"],"affiliations":[{"raw_affiliation_string":"LungLifeAI, Thousand Oaks, California, USA","institution_ids":["https://openalex.org/I4210101325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112452783","display_name":"Paul C. Pagano","orcid":null},"institutions":[{"id":"https://openalex.org/I4210101325","display_name":"LungLife AI (United States)","ror":"https://ror.org/01ecs7r71","country_code":"US","type":"company","lineage":["https://openalex.org/I4210101325"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Paul Pagano","raw_affiliation_strings":["LungLifeAI, Thousand Oaks, California, USA"],"affiliations":[{"raw_affiliation_string":"LungLifeAI, Thousand Oaks, California, USA","institution_ids":["https://openalex.org/I4210101325"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076521289","display_name":"Bhushan Garware","orcid":null},"institutions":[{"id":"https://openalex.org/I2800727657","display_name":"Persistent Systems (India)","ror":"https://ror.org/03pekdw43","country_code":"IN","type":"education","lineage":["https://openalex.org/I2800727657"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Bhushan Garware","raw_affiliation_strings":["Persistent Systems Ltd., Pune, India"],"affiliations":[{"raw_affiliation_string":"Persistent Systems Ltd., Pune, India","institution_ids":["https://openalex.org/I2800727657"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5049983581"],"corresponding_institution_ids":["https://openalex.org/I2800727657"],"apc_list":null,"apc_paid":null,"fwci":0.0799,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.3524507,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"282","last_page":"288"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11393","display_name":"Biosensors and Analytical Detection","score":0.9901000261306763,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/fluorescence-in-situ-hybridization","display_name":"Fluorescence in situ hybridization","score":0.717800498008728},{"id":"https://openalex.org/keywords/fish-actinopterygii","display_name":"Fish <Actinopterygii>","score":0.6761988401412964},{"id":"https://openalex.org/keywords/lung-cancer","display_name":"Lung cancer","score":0.5746010541915894},{"id":"https://openalex.org/keywords/lung","display_name":"Lung","score":0.524860143661499},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.5043448209762573},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4426381587982178},{"id":"https://openalex.org/keywords/recall","display_name":"Recall","score":0.4385717511177063},{"id":"https://openalex.org/keywords/recall-rate","display_name":"Recall rate","score":0.4312959909439087},{"id":"https://openalex.org/keywords/in-situ","display_name":"In situ","score":0.42056405544281006},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.4033169150352478},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.36203038692474365},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.32614755630493164},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.30861926078796387},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2336956262588501},{"id":"https://openalex.org/keywords/chromosome","display_name":"Chromosome","score":0.18406152725219727},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14907675981521606},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.1270739734172821},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.10314837098121643},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09164682030677795}],"concepts":[{"id":"https://openalex.org/C2777542201","wikidata":"https://www.wikidata.org/wiki/Q1336182","display_name":"Fluorescence in situ hybridization","level":4,"score":0.717800498008728},{"id":"https://openalex.org/C2909208804","wikidata":"https://www.wikidata.org/wiki/Q127282","display_name":"Fish <Actinopterygii>","level":2,"score":0.6761988401412964},{"id":"https://openalex.org/C2776256026","wikidata":"https://www.wikidata.org/wiki/Q47912","display_name":"Lung cancer","level":2,"score":0.5746010541915894},{"id":"https://openalex.org/C2777714996","wikidata":"https://www.wikidata.org/wiki/Q7886","display_name":"Lung","level":2,"score":0.524860143661499},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.5043448209762573},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4426381587982178},{"id":"https://openalex.org/C100660578","wikidata":"https://www.wikidata.org/wiki/Q18733","display_name":"Recall","level":2,"score":0.4385717511177063},{"id":"https://openalex.org/C2987098735","wikidata":"https://www.wikidata.org/wiki/Q3808900","display_name":"Recall rate","level":2,"score":0.4312959909439087},{"id":"https://openalex.org/C2777822432","wikidata":"https://www.wikidata.org/wiki/Q216681","display_name":"In situ","level":2,"score":0.42056405544281006},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.4033169150352478},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.36203038692474365},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.32614755630493164},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.30861926078796387},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2336956262588501},{"id":"https://openalex.org/C30481170","wikidata":"https://www.wikidata.org/wiki/Q37748","display_name":"Chromosome","level":3,"score":0.18406152725219727},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14907675981521606},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.1270739734172821},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.10314837098121643},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09164682030677795},{"id":"https://openalex.org/C505870484","wikidata":"https://www.wikidata.org/wiki/Q180538","display_name":"Fishery","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3371158.3371201","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3371158.3371201","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 7th ACM IKDD CoDS and 25th COMAD","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Life below water","id":"https://metadata.un.org/sdg/14","score":0.5}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W130099911","https://openalex.org/W1901129140","https://openalex.org/W2008402229","https://openalex.org/W2090360086","https://openalex.org/W2103935642","https://openalex.org/W2109008952","https://openalex.org/W2123913352","https://openalex.org/W2133059825","https://openalex.org/W2133153294","https://openalex.org/W2136304620","https://openalex.org/W2739875558","https://openalex.org/W2781525129","https://openalex.org/W2810592374","https://openalex.org/W2951594447","https://openalex.org/W4238271913","https://openalex.org/W4246084279"],"related_works":["https://openalex.org/W4330338194","https://openalex.org/W2118758177","https://openalex.org/W2153520307","https://openalex.org/W2151459719","https://openalex.org/W623261610","https://openalex.org/W3091006511","https://openalex.org/W2036523811","https://openalex.org/W4232264032","https://openalex.org/W1996359983","https://openalex.org/W3214249595"],"abstract_inverted_index":{"Fluorescence":[0],"in-situ":[1],"hybridization":[2],"(FISH)":[3],"is":[4,26],"a":[5,27,54,80,112],"molecular":[6],"cytogenetic":[7],"technique":[8],"developed":[9],"to":[10,57,95],"detect":[11],"or":[12,16,22],"localize":[13],"the":[14,66,97,100,119,126,144,150,151,156,157],"presence":[15],"absence":[17],"of":[18,68,99,104,116,121,140,153,155],"specific":[19],"DNA":[20],"sequences":[21],"chromosomes.":[23],"Lung":[24,105],"LB":[25],"FISH":[28,59],"based":[29,72],"confirmatory":[30],"diagnostic":[31],"test":[32],"for":[33,75],"lung":[34,47],"cancer":[35],"which":[36],"detects":[37],"circulating":[38],"tumor":[39],"cells":[40],"(CTC)":[41],"in":[42,83,111,118],"clinical":[43,132],"patients":[44],"with":[45],"indeterminate":[46],"nodules.":[48],"In":[49],"this":[50],"paper,":[51],"we":[52],"propose":[53],"novel":[55],"approach":[56],"segment":[58],"probes":[60],"using":[61],"3D":[62],"U-Nets":[63],"and":[64,102],"highlight":[65],"limitations":[67],"traditional":[69],"Computer":[70],"Vision":[71],"segmentation":[73],"techniques":[74],"microscopic":[76],"images.":[77],"We":[78],"observe":[79],"significant":[81],"reduction":[82,115],"false":[84],"positive":[85],"rates":[86],"without":[87],"losing":[88],"any":[89],"real":[90],"verified":[91],"CTC,":[92],"thus":[93],"helping":[94],"improve":[96],"efficiency":[98],"pathologists":[101],"accuracy":[103],"LB.":[106],"The":[107],"proposed":[108],"method":[109],"results":[110],"average":[113,139],"percentage":[114],"62.875%":[117],"number":[120],"falsely":[122],"detected":[123],"CTCs":[124],"over":[125,149],"commercially":[127],"available":[128],"tool":[129],"on":[130],"20":[131],"cases":[133],"(~1,86,901":[134],"cells),":[135],"while":[136],"achieving":[137],"an":[138,147],"94.72%":[141],"recall":[142,152],"across":[143],"cases,":[145],"showing":[146],"improvement":[148],"72.9%":[154],"commercial":[158],"system.":[159]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
